data_8UQU # _model_server_result.job_id M7lA5vu2jAXmoK5MYDTVKg _model_server_result.datetime_utc '2025-01-02 18:33:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8uqu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":403}' # _entry.id 8UQU # _exptl.entry_id 8UQU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.087 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'D(-)-TARTARIC ACID' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8UQU _cell.length_a 149.971 _cell.length_b 149.971 _cell.length_c 371.921 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UQU _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,W,X 1 1 C,S,T,U,V,Y 2 1 C,S,T,U,V,Y 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 74.9855 129.878696 61.986833 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 S N N ? 4 T N N ? 4 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 122 A THR 104 1_555 D NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc2 D NA NA . A NA 401 1_555 E OH3 1PE . A 1PE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.975 ? metalc ? metalc3 D NA NA . A NA 401 1_555 E OH4 1PE . A 1PE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? metalc ? metalc4 D NA NA . A NA 401 1_555 E OH6 1PE . A 1PE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc5 D NA NA . A NA 401 1_555 E OH7 1PE . A 1PE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? metalc ? metalc6 D NA NA . A NA 401 1_555 W O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? # _chem_comp.formula 'C4 H6 O6' _chem_comp.formula_weight 150.087 _chem_comp.id TAR _chem_comp.mon_nstd_flag . _chem_comp.name 'D(-)-TARTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 TAR doub 349 n n O11 C1 TAR sing 350 n n O11 HO1 TAR sing 351 n n C1 C2 TAR sing 352 n n C2 O2 TAR sing 353 n n C2 C3 TAR sing 354 n n C2 H2 TAR sing 355 n n O2 HO2 TAR sing 356 n n C3 O3 TAR sing 357 n n C3 C4 TAR sing 358 n n C3 H3 TAR sing 359 n n O3 HO3 TAR sing 360 n n C4 O4 TAR doub 361 n n C4 O41 TAR sing 362 n n O41 HO4 TAR sing 363 n n # _atom_sites.entry_id 8UQU _atom_sites.fract_transf_matrix[1][1] 0.006668 _atom_sites.fract_transf_matrix[1][2] 0.00385 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007699 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002689 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NA A 1 401 1 NA NA . E 3 1PE A 1 402 2 1PE 1PE . F 4 TAR A 1 403 3 TAR TAR . G 4 TAR A 1 404 4 TAR TAR . H 5 GOL A 1 405 12 GOL GOL . I 6 EDO A 1 406 13 EDO EDO . J 6 EDO A 1 407 16 EDO EDO . K 4 TAR B 1 401 6 TAR TAR . L 4 TAR B 1 402 7 TAR TAR . M 4 TAR B 1 403 8 TAR TAR . N 6 EDO B 1 404 14 EDO EDO . O 6 EDO B 1 405 15 EDO EDO . P 6 EDO B 1 406 17 EDO EDO . Q 6 EDO B 1 407 18 EDO EDO . R 6 EDO B 1 408 19 EDO EDO . S 4 TAR C 1 401 5 TAR TAR . T 4 TAR C 1 402 9 TAR TAR . U 4 TAR C 1 403 10 TAR TAR . V 5 GOL C 1 404 11 GOL GOL . W 7 HOH A 1 501 96 HOH HOH . W 7 HOH A 2 502 85 HOH HOH . W 7 HOH A 3 503 46 HOH HOH . W 7 HOH A 4 504 22 HOH HOH . W 7 HOH A 5 505 26 HOH HOH . W 7 HOH A 6 506 53 HOH HOH . W 7 HOH A 7 507 86 HOH HOH . W 7 HOH A 8 508 122 HOH HOH . W 7 HOH A 9 509 60 HOH HOH . W 7 HOH A 10 510 54 HOH HOH . W 7 HOH A 11 511 49 HOH HOH . W 7 HOH A 12 512 32 HOH HOH . W 7 HOH A 13 513 38 HOH HOH . W 7 HOH A 14 514 84 HOH HOH . W 7 HOH A 15 515 33 HOH HOH . W 7 HOH A 16 516 36 HOH HOH . W 7 HOH A 17 517 87 HOH HOH . W 7 HOH A 18 518 42 HOH HOH . W 7 HOH A 19 519 30 HOH HOH . W 7 HOH A 20 520 83 HOH HOH . W 7 HOH A 21 521 99 HOH HOH . W 7 HOH A 22 522 100 HOH HOH . W 7 HOH A 23 523 72 HOH HOH . W 7 HOH A 24 524 89 HOH HOH . W 7 HOH A 25 525 41 HOH HOH . W 7 HOH A 26 526 31 HOH HOH . W 7 HOH A 27 527 81 HOH HOH . W 7 HOH A 28 528 73 HOH HOH . W 7 HOH A 29 529 82 HOH HOH . W 7 HOH A 30 530 129 HOH HOH . W 7 HOH A 31 531 98 HOH HOH . W 7 HOH A 32 532 93 HOH HOH . W 7 HOH A 33 533 95 HOH HOH . W 7 HOH A 34 534 94 HOH HOH . W 7 HOH A 35 535 90 HOH HOH . W 7 HOH A 36 536 97 HOH HOH . W 7 HOH A 37 537 88 HOH HOH . W 7 HOH A 38 538 133 HOH HOH . W 7 HOH A 39 539 57 HOH HOH . W 7 HOH A 40 540 79 HOH HOH . X 7 HOH B 1 501 58 HOH HOH . X 7 HOH B 2 502 124 HOH HOH . X 7 HOH B 3 503 37 HOH HOH . X 7 HOH B 4 504 23 HOH HOH . X 7 HOH B 5 505 44 HOH HOH . X 7 HOH B 6 506 101 HOH HOH . X 7 HOH B 7 507 47 HOH HOH . X 7 HOH B 8 508 68 HOH HOH . X 7 HOH B 9 509 77 HOH HOH . X 7 HOH B 10 510 56 HOH HOH . X 7 HOH B 11 511 134 HOH HOH . X 7 HOH B 12 512 63 HOH HOH . X 7 HOH B 13 513 62 HOH HOH . X 7 HOH B 14 514 27 HOH HOH . X 7 HOH B 15 515 130 HOH HOH . X 7 HOH B 16 516 106 HOH HOH . X 7 HOH B 17 517 67 HOH HOH . X 7 HOH B 18 518 76 HOH HOH . X 7 HOH B 19 519 91 HOH HOH . X 7 HOH B 20 520 52 HOH HOH . X 7 HOH B 21 521 71 HOH HOH . X 7 HOH B 22 522 48 HOH HOH . X 7 HOH B 23 523 110 HOH HOH . X 7 HOH B 24 524 112 HOH HOH . X 7 HOH B 25 525 111 HOH HOH . X 7 HOH B 26 526 102 HOH HOH . X 7 HOH B 27 527 125 HOH HOH . X 7 HOH B 28 528 108 HOH HOH . X 7 HOH B 29 529 51 HOH HOH . X 7 HOH B 30 530 126 HOH HOH . X 7 HOH B 31 531 24 HOH HOH . X 7 HOH B 32 532 105 HOH HOH . X 7 HOH B 33 533 92 HOH HOH . X 7 HOH B 34 534 104 HOH HOH . X 7 HOH B 35 535 103 HOH HOH . X 7 HOH B 36 536 21 HOH HOH . X 7 HOH B 37 537 123 HOH HOH . X 7 HOH B 38 538 107 HOH HOH . X 7 HOH B 39 539 109 HOH HOH . Y 7 HOH C 1 501 43 HOH HOH . Y 7 HOH C 2 502 35 HOH HOH . Y 7 HOH C 3 503 29 HOH HOH . Y 7 HOH C 4 504 120 HOH HOH . Y 7 HOH C 5 505 66 HOH HOH . Y 7 HOH C 6 506 25 HOH HOH . Y 7 HOH C 7 507 117 HOH HOH . Y 7 HOH C 8 508 116 HOH HOH . Y 7 HOH C 9 509 78 HOH HOH . Y 7 HOH C 10 510 34 HOH HOH . Y 7 HOH C 11 511 59 HOH HOH . Y 7 HOH C 12 512 20 HOH HOH . Y 7 HOH C 13 513 132 HOH HOH . Y 7 HOH C 14 514 50 HOH HOH . Y 7 HOH C 15 515 131 HOH HOH . Y 7 HOH C 16 516 65 HOH HOH . Y 7 HOH C 17 517 80 HOH HOH . Y 7 HOH C 18 518 113 HOH HOH . Y 7 HOH C 19 519 28 HOH HOH . Y 7 HOH C 20 520 55 HOH HOH . Y 7 HOH C 21 521 70 HOH HOH . Y 7 HOH C 22 522 127 HOH HOH . Y 7 HOH C 23 523 40 HOH HOH . Y 7 HOH C 24 524 45 HOH HOH . Y 7 HOH C 25 525 128 HOH HOH . Y 7 HOH C 26 526 114 HOH HOH . Y 7 HOH C 27 527 39 HOH HOH . Y 7 HOH C 28 528 118 HOH HOH . Y 7 HOH C 29 529 69 HOH HOH . Y 7 HOH C 30 530 119 HOH HOH . Y 7 HOH C 31 531 115 HOH HOH . Y 7 HOH C 32 532 121 HOH HOH . Y 7 HOH C 33 533 64 HOH HOH . Y 7 HOH C 34 534 74 HOH HOH . Y 7 HOH C 35 535 61 HOH HOH . Y 7 HOH C 36 536 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 TAR . . . M 4 -3.921 53.459 6.793 1 158.73 ? O1 TAR 403 B 1 HETATM 2 O O11 TAR . . . M 4 -5.432 52.276 7.919 1 140.28 ? O11 TAR 403 B 1 HETATM 3 C C1 TAR . . . M 4 -4.446 52.385 7.153 1 153.86 ? C1 TAR 403 B 1 HETATM 4 C C2 TAR . . . M 4 -3.839 51.087 6.602 1 144.19 ? C2 TAR 403 B 1 HETATM 5 O O2 TAR . . . M 4 -4.47 50.696 5.398 1 130.22 ? O2 TAR 403 B 1 HETATM 6 C C3 TAR . . . M 4 -2.332 51.252 6.373 1 133.37 ? C3 TAR 403 B 1 HETATM 7 O O3 TAR . . . M 4 -1.851 50.207 5.551 1 123.82 ? O3 TAR 403 B 1 HETATM 8 C C4 TAR . . . M 4 -1.595 51.28 7.717 1 136.81 ? C4 TAR 403 B 1 HETATM 9 O O4 TAR . . . M 4 -1.221 52.394 8.137 1 129.87 ? O4 TAR 403 B 1 HETATM 10 O O41 TAR . . . M 4 -1.419 50.184 8.293 1 141.26 ? O41 TAR 403 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #