data_8UR1
#
_model_server_result.job_id            SJogiugi9IjiIij7yWNeVw 
_model_server_result.datetime_utc      '2024-12-21 17:57:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ur1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":315}' 
#
_entry.id    8UR1 
#
_exptl.entry_id    8UR1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8UR1 
_cell.length_a            96.4 
_cell.length_b            96.4 
_cell.length_c            205.596 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8UR1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        180 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 62 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -96.4 0 0 
3 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
4 'crystal symmetry operation' 11_455 -x+y-1,y,-z -1 0 0 0 1 0 0 0 -1 -96.4 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 M N N 
? 5 N N N 
? 5 O N N 
? 5 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LEU 172 A LEU 164 1_555 A N KPI 173 A KPI 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale2 A C KPI 173 A KPI 165 1_555 A N GLN 174 A GLN 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
metalc ? metalc1 A O ASP 48 A ASP 40 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc2 A OG1 THR 83 A THR 75 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc3 A OG1 THR 115 A THR 107 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? 
metalc ? metalc4 A OD1 ASN 146 A ASN 138 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.047 ? 
metalc ? metalc5 A OG SER 151 A SER 143 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? 
metalc ? metalc6 A O ASN 196 A ASN 188 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? 
metalc ? metalc7 A OD1 ASP 199 A ASP 191 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? 
metalc ? metalc8 A OH TYR 218 A TYR 210 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? 
metalc ? metalc9 A O VAL 275 A VAL 267 1_555 E NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? 
metalc ? metalc10 A O LEU 277 A LEU 269 1_555 E NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? 
metalc ? metalc11 B NA NA . A NA 301 1_555 T O HOH . A HOH 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? 
metalc ? metalc12 B NA NA . A NA 301 1_555 T O HOH . A HOH 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc13 B NA NA . A NA 301 1_555 T O HOH . A HOH 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
metalc ? metalc14 B NA NA . A NA 301 1_555 T O HOH . A HOH 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 166 n n 
C1 C2 GOL sing 167 n n 
C1 H11 GOL sing 168 n n 
C1 H12 GOL sing 169 n n 
O1 HO1 GOL sing 170 n n 
C2 O2 GOL sing 171 n n 
C2 C3 GOL sing 172 n n 
C2 H2 GOL sing 173 n n 
O2 HO2 GOL sing 174 n n 
C3 O3 GOL sing 175 n n 
C3 H31 GOL sing 176 n n 
C3 H32 GOL sing 177 n n 
O3 HO3 GOL sing 178 n n 
#
_atom_sites.entry_id                     8UR1 
_atom_sites.fract_transf_matrix[1][1]    0.010373 
_atom_sites.fract_transf_matrix[1][2]    0.005989 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011978 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004864 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 301 1 NA NA . 
C 2 NA A 1 302 2 NA NA . 
D 2 NA A 1 303 3 NA NA . 
E 2 NA A 1 304 4 NA NA . 
F 3 CL A 1 305 1 CL CL . 
G 3 CL A 1 306 2 CL CL . 
H 3 CL A 1 307 3 CL CL . 
I 3 CL A 1 308 4 CL CL . 
J 4 SO4 A 1 309 1 SO4 SO4 . 
K 4 SO4 A 1 310 2 SO4 SO4 . 
L 4 SO4 A 1 311 3 SO4 SO4 . 
M 5 GOL A 1 312 301 GOL GOL . 
N 5 GOL A 1 313 302 GOL GOL . 
O 5 GOL A 1 314 303 GOL GOL . 
P 5 GOL A 1 315 304 GOL GOL . 
Q 6 NO3 A 1 316 1 NO3 NO3 . 
R 6 NO3 A 1 317 2 NO3 NO3 . 
S 7 1PE A 1 318 301 1PE 1PE . 
T 8 HOH A 1 401 162 HOH HOH . 
T 8 HOH A 2 402 107 HOH HOH . 
T 8 HOH A 3 403 140 HOH HOH . 
T 8 HOH A 4 404 144 HOH HOH . 
T 8 HOH A 5 405 93 HOH HOH . 
T 8 HOH A 6 406 152 HOH HOH . 
T 8 HOH A 7 407 74 HOH HOH . 
T 8 HOH A 8 408 16 HOH HOH . 
T 8 HOH A 9 409 95 HOH HOH . 
T 8 HOH A 10 410 141 HOH HOH . 
T 8 HOH A 11 411 168 HOH HOH . 
T 8 HOH A 12 412 115 HOH HOH . 
T 8 HOH A 13 413 81 HOH HOH . 
T 8 HOH A 14 414 43 HOH HOH . 
T 8 HOH A 15 415 52 HOH HOH . 
T 8 HOH A 16 416 47 HOH HOH . 
T 8 HOH A 17 417 104 HOH HOH . 
T 8 HOH A 18 418 34 HOH HOH . 
T 8 HOH A 19 419 39 HOH HOH . 
T 8 HOH A 20 420 23 HOH HOH . 
T 8 HOH A 21 421 143 HOH HOH . 
T 8 HOH A 22 422 119 HOH HOH . 
T 8 HOH A 23 423 86 HOH HOH . 
T 8 HOH A 24 424 33 HOH HOH . 
T 8 HOH A 25 425 31 HOH HOH . 
T 8 HOH A 26 426 48 HOH HOH . 
T 8 HOH A 27 427 145 HOH HOH . 
T 8 HOH A 28 428 153 HOH HOH . 
T 8 HOH A 29 429 18 HOH HOH . 
T 8 HOH A 30 430 44 HOH HOH . 
T 8 HOH A 31 431 26 HOH HOH . 
T 8 HOH A 32 432 89 HOH HOH . 
T 8 HOH A 33 433 100 HOH HOH . 
T 8 HOH A 34 434 29 HOH HOH . 
T 8 HOH A 35 435 66 HOH HOH . 
T 8 HOH A 36 436 65 HOH HOH . 
T 8 HOH A 37 437 10 HOH HOH . 
T 8 HOH A 38 438 78 HOH HOH . 
T 8 HOH A 39 439 170 HOH HOH . 
T 8 HOH A 40 440 9 HOH HOH . 
T 8 HOH A 41 441 35 HOH HOH . 
T 8 HOH A 42 442 53 HOH HOH . 
T 8 HOH A 43 443 12 HOH HOH . 
T 8 HOH A 44 444 1 HOH HOH . 
T 8 HOH A 45 445 175 HOH HOH . 
T 8 HOH A 46 446 169 HOH HOH . 
T 8 HOH A 47 447 88 HOH HOH . 
T 8 HOH A 48 448 11 HOH HOH . 
T 8 HOH A 49 449 72 HOH HOH . 
T 8 HOH A 50 450 61 HOH HOH . 
T 8 HOH A 51 451 37 HOH HOH . 
T 8 HOH A 52 452 101 HOH HOH . 
T 8 HOH A 53 453 102 HOH HOH . 
T 8 HOH A 54 454 132 HOH HOH . 
T 8 HOH A 55 455 5 HOH HOH . 
T 8 HOH A 56 456 62 HOH HOH . 
T 8 HOH A 57 457 6 HOH HOH . 
T 8 HOH A 58 458 69 HOH HOH . 
T 8 HOH A 59 459 32 HOH HOH . 
T 8 HOH A 60 460 22 HOH HOH . 
T 8 HOH A 61 461 70 HOH HOH . 
T 8 HOH A 62 462 109 HOH HOH . 
T 8 HOH A 63 463 36 HOH HOH . 
T 8 HOH A 64 464 27 HOH HOH . 
T 8 HOH A 65 465 13 HOH HOH . 
T 8 HOH A 66 466 19 HOH HOH . 
T 8 HOH A 67 467 118 HOH HOH . 
T 8 HOH A 68 468 7 HOH HOH . 
T 8 HOH A 69 469 8 HOH HOH . 
T 8 HOH A 70 470 51 HOH HOH . 
T 8 HOH A 71 471 165 HOH HOH . 
T 8 HOH A 72 472 21 HOH HOH . 
T 8 HOH A 73 473 96 HOH HOH . 
T 8 HOH A 74 474 41 HOH HOH . 
T 8 HOH A 75 475 17 HOH HOH . 
T 8 HOH A 76 476 129 HOH HOH . 
T 8 HOH A 77 477 128 HOH HOH . 
T 8 HOH A 78 478 137 HOH HOH . 
T 8 HOH A 79 479 149 HOH HOH . 
T 8 HOH A 80 480 110 HOH HOH . 
T 8 HOH A 81 481 113 HOH HOH . 
T 8 HOH A 82 482 83 HOH HOH . 
T 8 HOH A 83 483 148 HOH HOH . 
T 8 HOH A 84 484 85 HOH HOH . 
T 8 HOH A 85 485 71 HOH HOH . 
T 8 HOH A 86 486 15 HOH HOH . 
T 8 HOH A 87 487 94 HOH HOH . 
T 8 HOH A 88 488 121 HOH HOH . 
T 8 HOH A 89 489 24 HOH HOH . 
T 8 HOH A 90 490 134 HOH HOH . 
T 8 HOH A 91 491 120 HOH HOH . 
T 8 HOH A 92 492 73 HOH HOH . 
T 8 HOH A 93 493 57 HOH HOH . 
T 8 HOH A 94 494 60 HOH HOH . 
T 8 HOH A 95 495 84 HOH HOH . 
T 8 HOH A 96 496 68 HOH HOH . 
T 8 HOH A 97 497 25 HOH HOH . 
T 8 HOH A 98 498 92 HOH HOH . 
T 8 HOH A 99 499 111 HOH HOH . 
T 8 HOH A 100 500 2 HOH HOH . 
T 8 HOH A 101 501 46 HOH HOH . 
T 8 HOH A 102 502 79 HOH HOH . 
T 8 HOH A 103 503 97 HOH HOH . 
T 8 HOH A 104 504 28 HOH HOH . 
T 8 HOH A 105 505 75 HOH HOH . 
T 8 HOH A 106 506 14 HOH HOH . 
T 8 HOH A 107 507 87 HOH HOH . 
T 8 HOH A 108 508 80 HOH HOH . 
T 8 HOH A 109 509 173 HOH HOH . 
T 8 HOH A 110 510 59 HOH HOH . 
T 8 HOH A 111 511 146 HOH HOH . 
T 8 HOH A 112 512 20 HOH HOH . 
T 8 HOH A 113 513 114 HOH HOH . 
T 8 HOH A 114 514 127 HOH HOH . 
T 8 HOH A 115 515 77 HOH HOH . 
T 8 HOH A 116 516 112 HOH HOH . 
T 8 HOH A 117 517 117 HOH HOH . 
T 8 HOH A 118 518 76 HOH HOH . 
T 8 HOH A 119 519 49 HOH HOH . 
T 8 HOH A 120 520 105 HOH HOH . 
T 8 HOH A 121 521 56 HOH HOH . 
T 8 HOH A 122 522 116 HOH HOH . 
T 8 HOH A 123 523 30 HOH HOH . 
T 8 HOH A 124 524 54 HOH HOH . 
T 8 HOH A 125 525 64 HOH HOH . 
T 8 HOH A 126 526 45 HOH HOH . 
T 8 HOH A 127 527 40 HOH HOH . 
T 8 HOH A 128 528 67 HOH HOH . 
T 8 HOH A 129 529 90 HOH HOH . 
T 8 HOH A 130 530 38 HOH HOH . 
T 8 HOH A 131 531 50 HOH HOH . 
T 8 HOH A 132 532 125 HOH HOH . 
T 8 HOH A 133 533 171 HOH HOH . 
T 8 HOH A 134 534 58 HOH HOH . 
T 8 HOH A 135 535 63 HOH HOH . 
T 8 HOH A 136 536 98 HOH HOH . 
T 8 HOH A 137 537 176 HOH HOH . 
T 8 HOH A 138 538 135 HOH HOH . 
T 8 HOH A 139 539 133 HOH HOH . 
T 8 HOH A 140 540 106 HOH HOH . 
T 8 HOH A 141 541 3 HOH HOH . 
T 8 HOH A 142 542 108 HOH HOH . 
T 8 HOH A 143 543 138 HOH HOH . 
T 8 HOH A 144 544 158 HOH HOH . 
T 8 HOH A 145 545 99 HOH HOH . 
T 8 HOH A 146 546 4 HOH HOH . 
T 8 HOH A 147 547 161 HOH HOH . 
T 8 HOH A 148 548 55 HOH HOH . 
T 8 HOH A 149 549 123 HOH HOH . 
T 8 HOH A 150 550 163 HOH HOH . 
T 8 HOH A 151 551 42 HOH HOH . 
T 8 HOH A 152 552 160 HOH HOH . 
T 8 HOH A 153 553 156 HOH HOH . 
T 8 HOH A 154 554 159 HOH HOH . 
T 8 HOH A 155 555 157 HOH HOH . 
T 8 HOH A 156 556 174 HOH HOH . 
T 8 HOH A 157 557 167 HOH HOH . 
T 8 HOH A 158 558 91 HOH HOH . 
T 8 HOH A 159 559 151 HOH HOH . 
T 8 HOH A 160 560 122 HOH HOH . 
T 8 HOH A 161 561 172 HOH HOH . 
T 8 HOH A 162 562 154 HOH HOH . 
T 8 HOH A 163 563 82 HOH HOH . 
T 8 HOH A 164 564 126 HOH HOH . 
T 8 HOH A 165 565 155 HOH HOH . 
T 8 HOH A 166 566 147 HOH HOH . 
T 8 HOH A 167 567 164 HOH HOH . 
T 8 HOH A 168 568 150 HOH HOH . 
T 8 HOH A 169 569 136 HOH HOH . 
T 8 HOH A 170 570 131 HOH HOH . 
T 8 HOH A 171 571 139 HOH HOH . 
T 8 HOH A 172 572 166 HOH HOH . 
T 8 HOH A 173 573 142 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . P 5 -47.514 -7.6 33.476 1 57.2 ? C1 GOL 315 A 1 
HETATM 2 O O1 GOL . . . P 5 -47.943 -8.791 32.858 1 56.01 ? O1 GOL 315 A 1 
HETATM 3 C C2 GOL . . . P 5 -46.237 -7.092 32.826 1 42.04 ? C2 GOL 315 A 1 
HETATM 4 O O2 GOL . . . P 5 -45.359 -8.193 32.701 1 47.9 ? O2 GOL 315 A 1 
HETATM 5 C C3 GOL . . . P 5 -46.474 -6.459 31.458 1 42.53 ? C3 GOL 315 A 1 
HETATM 6 O O3 GOL . . . P 5 -47.239 -5.287 31.641 1 44.48 ? O3 GOL 315 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#