data_8URD
#
_model_server_result.job_id            SCmC7umSZKnsW6cJEWKidQ 
_model_server_result.datetime_utc      '2024-11-14 19:22:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8urd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    8URD 
#
_exptl.entry_id    8URD 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8URD 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8URD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 F N N 
? 2 J N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 208 n n 
PA O2A FAD sing 209 n n 
PA O5B FAD sing 210 n n 
PA O3P FAD sing 211 n n 
O2A HOA2 FAD sing 212 n n 
O5B C5B FAD sing 213 n n 
C5B C4B FAD sing 214 n n 
C5B H51A FAD sing 215 n n 
C5B H52A FAD sing 216 n n 
C4B O4B FAD sing 217 n n 
C4B C3B FAD sing 218 n n 
C4B H4B FAD sing 219 n n 
O4B C1B FAD sing 220 n n 
C3B O3B FAD sing 221 n n 
C3B C2B FAD sing 222 n n 
C3B H3B FAD sing 223 n n 
O3B HO3A FAD sing 224 n n 
C2B O2B FAD sing 225 n n 
C2B C1B FAD sing 226 n n 
C2B H2B FAD sing 227 n n 
O2B HO2A FAD sing 228 n n 
C1B N9A FAD sing 229 n n 
C1B H1B FAD sing 230 n n 
N9A C8A FAD sing 231 n y 
N9A C4A FAD sing 232 n y 
C8A N7A FAD doub 233 n y 
C8A H8A FAD sing 234 n n 
N7A C5A FAD sing 235 n y 
C5A C6A FAD sing 236 n y 
C5A C4A FAD doub 237 n y 
C6A N6A FAD sing 238 n n 
C6A N1A FAD doub 239 n y 
N6A H61A FAD sing 240 n n 
N6A H62A FAD sing 241 n n 
N1A C2A FAD sing 242 n y 
C2A N3A FAD doub 243 n y 
C2A H2A FAD sing 244 n n 
N3A C4A FAD sing 245 n y 
N1 C2 FAD sing 246 n n 
N1 C10 FAD doub 247 n n 
C2 O2 FAD doub 248 n n 
C2 N3 FAD sing 249 n n 
N3 C4 FAD sing 250 n n 
N3 HN3 FAD sing 251 n n 
C4 O4 FAD doub 252 n n 
C4 C4X FAD sing 253 n n 
C4X N5 FAD doub 254 n n 
C4X C10 FAD sing 255 n n 
N5 C5X FAD sing 256 n n 
C5X C6 FAD doub 257 n y 
C5X C9A FAD sing 258 n y 
C6 C7 FAD sing 259 n y 
C6 H6 FAD sing 260 n n 
C7 C7M FAD sing 261 n n 
C7 C8 FAD doub 262 n y 
C7M HM71 FAD sing 263 n n 
C7M HM72 FAD sing 264 n n 
C7M HM73 FAD sing 265 n n 
C8 C8M FAD sing 266 n n 
C8 C9 FAD sing 267 n y 
C8M HM81 FAD sing 268 n n 
C8M HM82 FAD sing 269 n n 
C8M HM83 FAD sing 270 n n 
C9 C9A FAD doub 271 n y 
C9 H9 FAD sing 272 n n 
C9A N10 FAD sing 273 n n 
N10 C10 FAD sing 274 n n 
N10 C1' FAD sing 275 n n 
C1' C2' FAD sing 276 n n 
C1' "H1'1" FAD sing 277 n n 
C1' "H1'2" FAD sing 278 n n 
C2' O2' FAD sing 279 n n 
C2' C3' FAD sing 280 n n 
C2' H2' FAD sing 281 n n 
O2' HO2' FAD sing 282 n n 
C3' O3' FAD sing 283 n n 
C3' C4' FAD sing 284 n n 
C3' H3' FAD sing 285 n n 
O3' HO3' FAD sing 286 n n 
C4' O4' FAD sing 287 n n 
C4' C5' FAD sing 288 n n 
C4' H4' FAD sing 289 n n 
O4' HO4' FAD sing 290 n n 
C5' O5' FAD sing 291 n n 
C5' "H5'1" FAD sing 292 n n 
C5' "H5'2" FAD sing 293 n n 
O5' P FAD sing 294 n n 
P O1P FAD doub 295 n n 
P O2P FAD sing 296 n n 
P O3P FAD sing 297 n n 
O2P HOP2 FAD sing 298 n n 
#
_atom_sites.entry_id                     8URD 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 FAD A 1 501 501 FAD FAD . 
E 3 WTQ A 1 502 503 WTQ WTQ . 
F 2 FAD B 1 501 501 FAD FAD . 
G 3 WTQ B 1 502 503 WTQ WTQ . 
H 4 DR9 C 1 501 502 DR9 DR9 . 
I 4 DR9 C 1 502 502 DR9 DR9 . 
J 2 FAD C 1 503 501 FAD FAD . 
K 4 DR9 C 1 504 502 DR9 DR9 . 
L 3 WTQ C 1 505 503 WTQ WTQ . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . D 2 116.79 111.413 162.528 1 65.55 ? PA FAD 501 A 1 
HETATM 2 O O1A FAD . . . D 2 116.462 110.315 161.59 1 59.25 ? O1A FAD 501 A 1 
HETATM 3 O O2A FAD . . . D 2 117.893 111.052 163.509 1 69.44 ? O2A FAD 501 A 1 
HETATM 4 O O5B FAD . . . D 2 115.517 111.923 163.297 1 59.08 ? O5B FAD 501 A 1 
HETATM 5 C C5B FAD . . . D 2 114.831 111.087 164.253 1 61.58 ? C5B FAD 501 A 1 
HETATM 6 C C4B FAD . . . D 2 115.481 111.219 165.608 1 68.14 ? C4B FAD 501 A 1 
HETATM 7 O O4B FAD . . . D 2 114.889 112.33 166.32 1 69.7 ? O4B FAD 501 A 1 
HETATM 8 C C3B FAD . . . D 2 115.319 109.998 166.51 1 68.71 ? C3B FAD 501 A 1 
HETATM 9 O O3B FAD . . . D 2 116.507 109.722 167.243 1 60.65 ? O3B FAD 501 A 1 
HETATM 10 C C2B FAD . . . D 2 114.163 110.398 167.429 1 68.72 ? C2B FAD 501 A 1 
HETATM 11 O O2B FAD . . . D 2 114.254 109.759 168.697 1 74.03 ? O2B FAD 501 A 1 
HETATM 12 C C1B FAD . . . D 2 114.391 111.898 167.568 1 64.57 ? C1B FAD 501 A 1 
HETATM 13 N N9A FAD . . . D 2 113.176 112.65 167.863 1 61.62 ? N9A FAD 501 A 1 
HETATM 14 C C8A FAD . . . D 2 112.028 112.68 167.117 1 59.6 ? C8A FAD 501 A 1 
HETATM 15 N N7A FAD . . . D 2 111.085 113.439 167.621 1 58.44 ? N7A FAD 501 A 1 
HETATM 16 C C5A FAD . . . D 2 111.653 113.946 168.778 1 60.59 ? C5A FAD 501 A 1 
HETATM 17 C C6A FAD . . . D 2 111.169 114.819 169.771 1 63.8 ? C6A FAD 501 A 1 
HETATM 18 N N6A FAD . . . D 2 109.948 115.361 169.752 1 65.19 ? N6A FAD 501 A 1 
HETATM 19 N N1A FAD . . . D 2 111.991 115.121 170.798 1 63.57 ? N1A FAD 501 A 1 
HETATM 20 C C2A FAD . . . D 2 113.212 114.583 170.826 1 67.57 ? C2A FAD 501 A 1 
HETATM 21 N N3A FAD . . . D 2 113.775 113.749 169.948 1 70.44 ? N3A FAD 501 A 1 
HETATM 22 C C4A FAD . . . D 2 112.94 113.467 168.943 1 66.66 ? C4A FAD 501 A 1 
HETATM 23 N N1 FAD . . . D 2 120.17 107.661 155.071 1 62.44 ? N1 FAD 501 A 1 
HETATM 24 C C2 FAD . . . D 2 121.264 107.018 154.57 1 62.69 ? C2 FAD 501 A 1 
HETATM 25 O O2 FAD . . . D 2 122.331 107.609 154.386 1 67.76 ? O2 FAD 501 A 1 
HETATM 26 N N3 FAD . . . D 2 121.192 105.677 154.26 1 56.79 ? N3 FAD 501 A 1 
HETATM 27 C C4 FAD . . . D 2 120.085 104.878 154.404 1 62.6 ? C4 FAD 501 A 1 
HETATM 28 O O4 FAD . . . D 2 120.131 103.692 154.09 1 66.7 ? O4 FAD 501 A 1 
HETATM 29 C C4X FAD . . . D 2 118.926 105.565 154.929 1 64.64 ? C4X FAD 501 A 1 
HETATM 30 N N5 FAD . . . D 2 117.837 104.879 155.099 1 62.14 ? N5 FAD 501 A 1 
HETATM 31 C C5X FAD . . . D 2 116.732 105.528 155.608 1 58.03 ? C5X FAD 501 A 1 
HETATM 32 C C6 FAD . . . D 2 115.559 104.802 155.791 1 59.45 ? C6 FAD 501 A 1 
HETATM 33 C C7 FAD . . . D 2 114.416 105.405 156.301 1 63.39 ? C7 FAD 501 A 1 
HETATM 34 C C7M FAD . . . D 2 113.168 104.582 156.483 1 58.61 ? C7M FAD 501 A 1 
HETATM 35 C C8 FAD . . . D 2 114.443 106.769 156.634 1 67.99 ? C8 FAD 501 A 1 
HETATM 36 C C8M FAD . . . D 2 113.224 107.459 157.19 1 68.77 ? C8M FAD 501 A 1 
HETATM 37 C C9 FAD . . . D 2 115.615 107.495 156.453 1 57.38 ? C9 FAD 501 A 1 
HETATM 38 C C9A FAD . . . D 2 116.756 106.889 155.943 1 58.02 ? C9A FAD 501 A 1 
HETATM 39 N N10 FAD . . . D 2 117.957 107.598 155.738 1 64.42 ? N10 FAD 501 A 1 
HETATM 40 C C10 FAD . . . D 2 119.067 106.962 155.238 1 64.96 ? C10 FAD 501 A 1 
HETATM 41 C C1' FAD . . . D 2 118.056 109.022 156.078 1 65.31 ? C1' FAD 501 A 1 
HETATM 42 C C2' FAD . . . D 2 118.43 109.25 157.536 1 64.36 ? C2' FAD 501 A 1 
HETATM 43 O O2' FAD . . . D 2 117.327 108.945 158.388 1 68.3 ? O2' FAD 501 A 1 
HETATM 44 C C3' FAD . . . D 2 118.816 110.713 157.737 1 61.05 ? C3' FAD 501 A 1 
HETATM 45 O O3' FAD . . . D 2 119.966 110.993 156.95 1 67.44 ? O3' FAD 501 A 1 
HETATM 46 C C4' FAD . . . D 2 119.124 111.035 159.195 1 64.23 ? C4' FAD 501 A 1 
HETATM 47 O O4' FAD . . . D 2 118.146 110.384 160.005 1 63.78 ? O4' FAD 501 A 1 
HETATM 48 C C5' FAD . . . D 2 119.123 112.522 159.474 1 58.23 ? C5' FAD 501 A 1 
HETATM 49 O O5' FAD . . . D 2 119.543 112.744 160.835 1 57.37 ? O5' FAD 501 A 1 
HETATM 50 P P FAD . . . D 2 118.614 113.485 161.859 1 60.77 ? P FAD 501 A 1 
HETATM 51 O O1P FAD . . . D 2 119.108 113.389 163.223 1 67.94 ? O1P FAD 501 A 1 
HETATM 52 O O2P FAD . . . D 2 118.384 114.912 161.356 1 59.05 ? O2P FAD 501 A 1 
HETATM 53 O O3P FAD . . . D 2 117.248 112.697 161.718 1 77.37 ? O3P FAD 501 A 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           53 
#