data_8URD
#
_model_server_result.job_id            oAwwGaEfqknm7tBhPQ7ztg 
_model_server_result.datetime_utc      '2024-11-30 19:23:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8urd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    8URD 
#
_exptl.entry_id    8URD 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8URD 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8URD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 F N N 
? 2 J N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 208 n n 
PA O2A FAD sing 209 n n 
PA O5B FAD sing 210 n n 
PA O3P FAD sing 211 n n 
O2A HOA2 FAD sing 212 n n 
O5B C5B FAD sing 213 n n 
C5B C4B FAD sing 214 n n 
C5B H51A FAD sing 215 n n 
C5B H52A FAD sing 216 n n 
C4B O4B FAD sing 217 n n 
C4B C3B FAD sing 218 n n 
C4B H4B FAD sing 219 n n 
O4B C1B FAD sing 220 n n 
C3B O3B FAD sing 221 n n 
C3B C2B FAD sing 222 n n 
C3B H3B FAD sing 223 n n 
O3B HO3A FAD sing 224 n n 
C2B O2B FAD sing 225 n n 
C2B C1B FAD sing 226 n n 
C2B H2B FAD sing 227 n n 
O2B HO2A FAD sing 228 n n 
C1B N9A FAD sing 229 n n 
C1B H1B FAD sing 230 n n 
N9A C8A FAD sing 231 n y 
N9A C4A FAD sing 232 n y 
C8A N7A FAD doub 233 n y 
C8A H8A FAD sing 234 n n 
N7A C5A FAD sing 235 n y 
C5A C6A FAD sing 236 n y 
C5A C4A FAD doub 237 n y 
C6A N6A FAD sing 238 n n 
C6A N1A FAD doub 239 n y 
N6A H61A FAD sing 240 n n 
N6A H62A FAD sing 241 n n 
N1A C2A FAD sing 242 n y 
C2A N3A FAD doub 243 n y 
C2A H2A FAD sing 244 n n 
N3A C4A FAD sing 245 n y 
N1 C2 FAD sing 246 n n 
N1 C10 FAD doub 247 n n 
C2 O2 FAD doub 248 n n 
C2 N3 FAD sing 249 n n 
N3 C4 FAD sing 250 n n 
N3 HN3 FAD sing 251 n n 
C4 O4 FAD doub 252 n n 
C4 C4X FAD sing 253 n n 
C4X N5 FAD doub 254 n n 
C4X C10 FAD sing 255 n n 
N5 C5X FAD sing 256 n n 
C5X C6 FAD doub 257 n y 
C5X C9A FAD sing 258 n y 
C6 C7 FAD sing 259 n y 
C6 H6 FAD sing 260 n n 
C7 C7M FAD sing 261 n n 
C7 C8 FAD doub 262 n y 
C7M HM71 FAD sing 263 n n 
C7M HM72 FAD sing 264 n n 
C7M HM73 FAD sing 265 n n 
C8 C8M FAD sing 266 n n 
C8 C9 FAD sing 267 n y 
C8M HM81 FAD sing 268 n n 
C8M HM82 FAD sing 269 n n 
C8M HM83 FAD sing 270 n n 
C9 C9A FAD doub 271 n y 
C9 H9 FAD sing 272 n n 
C9A N10 FAD sing 273 n n 
N10 C10 FAD sing 274 n n 
N10 C1' FAD sing 275 n n 
C1' C2' FAD sing 276 n n 
C1' "H1'1" FAD sing 277 n n 
C1' "H1'2" FAD sing 278 n n 
C2' O2' FAD sing 279 n n 
C2' C3' FAD sing 280 n n 
C2' H2' FAD sing 281 n n 
O2' HO2' FAD sing 282 n n 
C3' O3' FAD sing 283 n n 
C3' C4' FAD sing 284 n n 
C3' H3' FAD sing 285 n n 
O3' HO3' FAD sing 286 n n 
C4' O4' FAD sing 287 n n 
C4' C5' FAD sing 288 n n 
C4' H4' FAD sing 289 n n 
O4' HO4' FAD sing 290 n n 
C5' O5' FAD sing 291 n n 
C5' "H5'1" FAD sing 292 n n 
C5' "H5'2" FAD sing 293 n n 
O5' P FAD sing 294 n n 
P O1P FAD doub 295 n n 
P O2P FAD sing 296 n n 
P O3P FAD sing 297 n n 
O2P HOP2 FAD sing 298 n n 
#
_atom_sites.entry_id                     8URD 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 FAD A 1 501 501 FAD FAD . 
E 3 WTQ A 1 502 503 WTQ WTQ . 
F 2 FAD B 1 501 501 FAD FAD . 
G 3 WTQ B 1 502 503 WTQ WTQ . 
H 4 DR9 C 1 501 502 DR9 DR9 . 
I 4 DR9 C 1 502 502 DR9 DR9 . 
J 2 FAD C 1 503 501 FAD FAD . 
K 4 DR9 C 1 504 502 DR9 DR9 . 
L 3 WTQ C 1 505 503 WTQ WTQ . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . F 2 120.191 101.138 85.408 1 38.01 ? PA FAD 501 B 1 
HETATM 2 O O1A FAD . . . F 2 120.466 102.583 85.368 1 46 ? O1A FAD 501 B 1 
HETATM 3 O O2A FAD . . . F 2 121.103 100.32 86.313 1 32.63 ? O2A FAD 501 B 1 
HETATM 4 O O5B FAD . . . F 2 120.213 100.548 83.956 1 53.62 ? O5B FAD 501 B 1 
HETATM 5 C C5B FAD . . . F 2 121.114 101.057 82.951 1 49.66 ? C5B FAD 501 B 1 
HETATM 6 C C4B FAD . . . F 2 122.425 100.31 82.992 1 51.15 ? C4B FAD 501 B 1 
HETATM 7 O O4B FAD . . . F 2 123.197 100.646 81.815 1 40.64 ? O4B FAD 501 B 1 
HETATM 8 C C3B FAD . . . F 2 123.316 100.637 84.191 1 51.75 ? C3B FAD 501 B 1 
HETATM 9 O O3B FAD . . . F 2 124.011 99.492 84.67 1 37.3 ? O3B FAD 501 B 1 
HETATM 10 C C2B FAD . . . F 2 124.274 101.682 83.623 1 54.4 ? C2B FAD 501 B 1 
HETATM 11 O O2B FAD . . . F 2 125.505 101.713 84.335 1 42.94 ? O2B FAD 501 B 1 
HETATM 12 C C1B FAD . . . F 2 124.452 101.163 82.201 1 51.66 ? C1B FAD 501 B 1 
HETATM 13 N N9A FAD . . . F 2 124.849 102.186 81.241 1 52.35 ? N9A FAD 501 B 1 
HETATM 14 C C8A FAD . . . F 2 125.64 103.277 81.485 1 52.02 ? C8A FAD 501 B 1 
HETATM 15 N N7A FAD . . . F 2 125.849 104.029 80.432 1 49.86 ? N7A FAD 501 B 1 
HETATM 16 C C5A FAD . . . F 2 125.151 103.384 79.424 1 45 ? C5A FAD 501 B 1 
HETATM 17 C C6A FAD . . . F 2 124.975 103.672 78.058 1 46.5 ? C6A FAD 501 B 1 
HETATM 18 N N6A FAD . . . F 2 125.51 104.732 77.445 1 46.26 ? N6A FAD 501 B 1 
HETATM 19 N N1A FAD . . . F 2 124.221 102.822 77.331 1 45.01 ? N1A FAD 501 B 1 
HETATM 20 C C2A FAD . . . F 2 123.683 101.757 77.934 1 50.24 ? C2A FAD 501 B 1 
HETATM 21 N N3A FAD . . . F 2 123.78 101.389 79.212 1 43.26 ? N3A FAD 501 B 1 
HETATM 22 C C4A FAD . . . F 2 124.532 102.246 79.908 1 44.29 ? C4A FAD 501 B 1 
HETATM 23 N N1 FAD . . . F 2 117.951 98.725 94.475 1 46.39 ? N1 FAD 501 B 1 
HETATM 24 C C2 FAD . . . F 2 116.993 98.077 95.2 1 51.01 ? C2 FAD 501 B 1 
HETATM 25 O O2 FAD . . . F 2 115.805 98.411 95.155 1 53.78 ? O2 FAD 501 B 1 
HETATM 26 N N3 FAD . . . F 2 117.343 97.016 96.007 1 40.77 ? N3 FAD 501 B 1 
HETATM 27 C C4 FAD . . . F 2 118.608 96.516 96.173 1 46.55 ? C4 FAD 501 B 1 
HETATM 28 O O4 FAD . . . F 2 118.798 95.563 96.926 1 50.18 ? O4 FAD 501 B 1 
HETATM 29 C C4X FAD . . . F 2 119.622 97.208 95.402 1 41.23 ? C4X FAD 501 B 1 
HETATM 30 N N5 FAD . . . F 2 120.846 96.801 95.505 1 46.66 ? N5 FAD 501 B 1 
HETATM 31 C C5X FAD . . . F 2 121.814 97.452 94.766 1 44.23 ? C5X FAD 501 B 1 
HETATM 32 C C6 FAD . . . F 2 123.136 97.019 94.863 1 46.5 ? C6 FAD 501 B 1 
HETATM 33 C C7 FAD . . . F 2 124.149 97.643 94.144 1 41.38 ? C7 FAD 501 B 1 
HETATM 34 C C7M FAD . . . F 2 125.563 97.144 94.277 1 38.85 ? C7M FAD 501 B 1 
HETATM 35 C C8 FAD . . . F 2 123.838 98.729 93.31 1 46.56 ? C8 FAD 501 B 1 
HETATM 36 C C8M FAD . . . F 2 124.907 99.43 92.515 1 48.85 ? C8M FAD 501 B 1 
HETATM 37 C C9 FAD . . . F 2 122.52 99.158 93.211 1 40.58 ? C9 FAD 501 B 1 
HETATM 38 C C9A FAD . . . F 2 121.508 98.532 93.93 1 43.74 ? C9A FAD 501 B 1 
HETATM 39 N N10 FAD . . . F 2 120.163 98.944 93.855 1 43.2 ? N10 FAD 501 B 1 
HETATM 40 C C10 FAD . . . F 2 119.194 98.303 94.579 1 40.36 ? C10 FAD 501 B 1 
HETATM 41 C C1' FAD . . . F 2 119.769 100.066 93.002 1 38.96 ? C1' FAD 501 B 1 
HETATM 42 C C2' FAD . . . F 2 119.245 99.625 91.645 1 37.01 ? C2' FAD 501 B 1 
HETATM 43 O O2' FAD . . . F 2 120.326 99.294 90.772 1 46.35 ? O2' FAD 501 B 1 
HETATM 44 C C3' FAD . . . F 2 118.444 100.769 91.031 1 38 ? C3' FAD 501 B 1 
HETATM 45 O O3' FAD . . . F 2 117.332 101.031 91.874 1 51.3 ? O3' FAD 501 B 1 
HETATM 46 C C4' FAD . . . F 2 117.944 100.476 89.622 1 46.8 ? C4' FAD 501 B 1 
HETATM 47 O O4' FAD . . . F 2 118.961 99.743 88.939 1 56.26 ? O4' FAD 501 B 1 
HETATM 48 C C5' FAD . . . F 2 117.619 101.747 88.871 1 35.34 ? C5' FAD 501 B 1 
HETATM 49 O O5' FAD . . . F 2 117.043 101.41 87.597 1 37.41 ? O5' FAD 501 B 1 
HETATM 50 P P FAD . . . F 2 117.639 101.987 86.266 1 38.63 ? P FAD 501 B 1 
HETATM 51 O O1P FAD . . . F 2 116.605 102.053 85.242 1 48.22 ? O1P FAD 501 B 1 
HETATM 52 O O2P FAD . . . F 2 118.371 103.297 86.564 1 44.17 ? O2P FAD 501 B 1 
HETATM 53 O O3P FAD . . . F 2 118.705 100.884 85.89 1 65.05 ? O3P FAD 501 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           53 
#