data_8URD # _model_server_result.job_id bvDgv1H0qbTMtzNSTSMX9g _model_server_result.datetime_utc '2024-11-14 19:42:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8urd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 8URD # _exptl.entry_id 8URD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8URD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8URD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 J N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 208 n n PA O2A FAD sing 209 n n PA O5B FAD sing 210 n n PA O3P FAD sing 211 n n O2A HOA2 FAD sing 212 n n O5B C5B FAD sing 213 n n C5B C4B FAD sing 214 n n C5B H51A FAD sing 215 n n C5B H52A FAD sing 216 n n C4B O4B FAD sing 217 n n C4B C3B FAD sing 218 n n C4B H4B FAD sing 219 n n O4B C1B FAD sing 220 n n C3B O3B FAD sing 221 n n C3B C2B FAD sing 222 n n C3B H3B FAD sing 223 n n O3B HO3A FAD sing 224 n n C2B O2B FAD sing 225 n n C2B C1B FAD sing 226 n n C2B H2B FAD sing 227 n n O2B HO2A FAD sing 228 n n C1B N9A FAD sing 229 n n C1B H1B FAD sing 230 n n N9A C8A FAD sing 231 n y N9A C4A FAD sing 232 n y C8A N7A FAD doub 233 n y C8A H8A FAD sing 234 n n N7A C5A FAD sing 235 n y C5A C6A FAD sing 236 n y C5A C4A FAD doub 237 n y C6A N6A FAD sing 238 n n C6A N1A FAD doub 239 n y N6A H61A FAD sing 240 n n N6A H62A FAD sing 241 n n N1A C2A FAD sing 242 n y C2A N3A FAD doub 243 n y C2A H2A FAD sing 244 n n N3A C4A FAD sing 245 n y N1 C2 FAD sing 246 n n N1 C10 FAD doub 247 n n C2 O2 FAD doub 248 n n C2 N3 FAD sing 249 n n N3 C4 FAD sing 250 n n N3 HN3 FAD sing 251 n n C4 O4 FAD doub 252 n n C4 C4X FAD sing 253 n n C4X N5 FAD doub 254 n n C4X C10 FAD sing 255 n n N5 C5X FAD sing 256 n n C5X C6 FAD doub 257 n y C5X C9A FAD sing 258 n y C6 C7 FAD sing 259 n y C6 H6 FAD sing 260 n n C7 C7M FAD sing 261 n n C7 C8 FAD doub 262 n y C7M HM71 FAD sing 263 n n C7M HM72 FAD sing 264 n n C7M HM73 FAD sing 265 n n C8 C8M FAD sing 266 n n C8 C9 FAD sing 267 n y C8M HM81 FAD sing 268 n n C8M HM82 FAD sing 269 n n C8M HM83 FAD sing 270 n n C9 C9A FAD doub 271 n y C9 H9 FAD sing 272 n n C9A N10 FAD sing 273 n n N10 C10 FAD sing 274 n n N10 C1' FAD sing 275 n n C1' C2' FAD sing 276 n n C1' "H1'1" FAD sing 277 n n C1' "H1'2" FAD sing 278 n n C2' O2' FAD sing 279 n n C2' C3' FAD sing 280 n n C2' H2' FAD sing 281 n n O2' HO2' FAD sing 282 n n C3' O3' FAD sing 283 n n C3' C4' FAD sing 284 n n C3' H3' FAD sing 285 n n O3' HO3' FAD sing 286 n n C4' O4' FAD sing 287 n n C4' C5' FAD sing 288 n n C4' H4' FAD sing 289 n n O4' HO4' FAD sing 290 n n C5' O5' FAD sing 291 n n C5' "H5'1" FAD sing 292 n n C5' "H5'2" FAD sing 293 n n O5' P FAD sing 294 n n P O1P FAD doub 295 n n P O2P FAD sing 296 n n P O3P FAD sing 297 n n O2P HOP2 FAD sing 298 n n # _atom_sites.entry_id 8URD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 FAD A 1 501 501 FAD FAD . E 3 WTQ A 1 502 503 WTQ WTQ . F 2 FAD B 1 501 501 FAD FAD . G 3 WTQ B 1 502 503 WTQ WTQ . H 4 DR9 C 1 501 502 DR9 DR9 . I 4 DR9 C 1 502 502 DR9 DR9 . J 2 FAD C 1 503 501 FAD FAD . K 4 DR9 C 1 504 502 DR9 DR9 . L 3 WTQ C 1 505 503 WTQ WTQ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . F 2 120.191 101.138 85.408 1 38.01 ? PA FAD 501 B 1 HETATM 2 O O1A FAD . . . F 2 120.466 102.583 85.368 1 46 ? O1A FAD 501 B 1 HETATM 3 O O2A FAD . . . F 2 121.103 100.32 86.313 1 32.63 ? O2A FAD 501 B 1 HETATM 4 O O5B FAD . . . F 2 120.213 100.548 83.956 1 53.62 ? O5B FAD 501 B 1 HETATM 5 C C5B FAD . . . F 2 121.114 101.057 82.951 1 49.66 ? C5B FAD 501 B 1 HETATM 6 C C4B FAD . . . F 2 122.425 100.31 82.992 1 51.15 ? C4B FAD 501 B 1 HETATM 7 O O4B FAD . . . F 2 123.197 100.646 81.815 1 40.64 ? O4B FAD 501 B 1 HETATM 8 C C3B FAD . . . F 2 123.316 100.637 84.191 1 51.75 ? C3B FAD 501 B 1 HETATM 9 O O3B FAD . . . F 2 124.011 99.492 84.67 1 37.3 ? O3B FAD 501 B 1 HETATM 10 C C2B FAD . . . F 2 124.274 101.682 83.623 1 54.4 ? C2B FAD 501 B 1 HETATM 11 O O2B FAD . . . F 2 125.505 101.713 84.335 1 42.94 ? O2B FAD 501 B 1 HETATM 12 C C1B FAD . . . F 2 124.452 101.163 82.201 1 51.66 ? C1B FAD 501 B 1 HETATM 13 N N9A FAD . . . F 2 124.849 102.186 81.241 1 52.35 ? N9A FAD 501 B 1 HETATM 14 C C8A FAD . . . F 2 125.64 103.277 81.485 1 52.02 ? C8A FAD 501 B 1 HETATM 15 N N7A FAD . . . F 2 125.849 104.029 80.432 1 49.86 ? N7A FAD 501 B 1 HETATM 16 C C5A FAD . . . F 2 125.151 103.384 79.424 1 45 ? C5A FAD 501 B 1 HETATM 17 C C6A FAD . . . F 2 124.975 103.672 78.058 1 46.5 ? C6A FAD 501 B 1 HETATM 18 N N6A FAD . . . F 2 125.51 104.732 77.445 1 46.26 ? N6A FAD 501 B 1 HETATM 19 N N1A FAD . . . F 2 124.221 102.822 77.331 1 45.01 ? N1A FAD 501 B 1 HETATM 20 C C2A FAD . . . F 2 123.683 101.757 77.934 1 50.24 ? C2A FAD 501 B 1 HETATM 21 N N3A FAD . . . F 2 123.78 101.389 79.212 1 43.26 ? N3A FAD 501 B 1 HETATM 22 C C4A FAD . . . F 2 124.532 102.246 79.908 1 44.29 ? C4A FAD 501 B 1 HETATM 23 N N1 FAD . . . F 2 117.951 98.725 94.475 1 46.39 ? N1 FAD 501 B 1 HETATM 24 C C2 FAD . . . F 2 116.993 98.077 95.2 1 51.01 ? C2 FAD 501 B 1 HETATM 25 O O2 FAD . . . F 2 115.805 98.411 95.155 1 53.78 ? O2 FAD 501 B 1 HETATM 26 N N3 FAD . . . F 2 117.343 97.016 96.007 1 40.77 ? N3 FAD 501 B 1 HETATM 27 C C4 FAD . . . F 2 118.608 96.516 96.173 1 46.55 ? C4 FAD 501 B 1 HETATM 28 O O4 FAD . . . F 2 118.798 95.563 96.926 1 50.18 ? O4 FAD 501 B 1 HETATM 29 C C4X FAD . . . F 2 119.622 97.208 95.402 1 41.23 ? C4X FAD 501 B 1 HETATM 30 N N5 FAD . . . F 2 120.846 96.801 95.505 1 46.66 ? N5 FAD 501 B 1 HETATM 31 C C5X FAD . . . F 2 121.814 97.452 94.766 1 44.23 ? C5X FAD 501 B 1 HETATM 32 C C6 FAD . . . F 2 123.136 97.019 94.863 1 46.5 ? C6 FAD 501 B 1 HETATM 33 C C7 FAD . . . F 2 124.149 97.643 94.144 1 41.38 ? C7 FAD 501 B 1 HETATM 34 C C7M FAD . . . F 2 125.563 97.144 94.277 1 38.85 ? C7M FAD 501 B 1 HETATM 35 C C8 FAD . . . F 2 123.838 98.729 93.31 1 46.56 ? C8 FAD 501 B 1 HETATM 36 C C8M FAD . . . F 2 124.907 99.43 92.515 1 48.85 ? C8M FAD 501 B 1 HETATM 37 C C9 FAD . . . F 2 122.52 99.158 93.211 1 40.58 ? C9 FAD 501 B 1 HETATM 38 C C9A FAD . . . F 2 121.508 98.532 93.93 1 43.74 ? C9A FAD 501 B 1 HETATM 39 N N10 FAD . . . F 2 120.163 98.944 93.855 1 43.2 ? N10 FAD 501 B 1 HETATM 40 C C10 FAD . . . F 2 119.194 98.303 94.579 1 40.36 ? C10 FAD 501 B 1 HETATM 41 C C1' FAD . . . F 2 119.769 100.066 93.002 1 38.96 ? C1' FAD 501 B 1 HETATM 42 C C2' FAD . . . F 2 119.245 99.625 91.645 1 37.01 ? C2' FAD 501 B 1 HETATM 43 O O2' FAD . . . F 2 120.326 99.294 90.772 1 46.35 ? O2' FAD 501 B 1 HETATM 44 C C3' FAD . . . F 2 118.444 100.769 91.031 1 38 ? C3' FAD 501 B 1 HETATM 45 O O3' FAD . . . F 2 117.332 101.031 91.874 1 51.3 ? O3' FAD 501 B 1 HETATM 46 C C4' FAD . . . F 2 117.944 100.476 89.622 1 46.8 ? C4' FAD 501 B 1 HETATM 47 O O4' FAD . . . F 2 118.961 99.743 88.939 1 56.26 ? O4' FAD 501 B 1 HETATM 48 C C5' FAD . . . F 2 117.619 101.747 88.871 1 35.34 ? C5' FAD 501 B 1 HETATM 49 O O5' FAD . . . F 2 117.043 101.41 87.597 1 37.41 ? O5' FAD 501 B 1 HETATM 50 P P FAD . . . F 2 117.639 101.987 86.266 1 38.63 ? P FAD 501 B 1 HETATM 51 O O1P FAD . . . F 2 116.605 102.053 85.242 1 48.22 ? O1P FAD 501 B 1 HETATM 52 O O2P FAD . . . F 2 118.371 103.297 86.564 1 44.17 ? O2P FAD 501 B 1 HETATM 53 O O3P FAD . . . F 2 118.705 100.884 85.89 1 65.05 ? O3P FAD 501 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 53 #