data_8URD
#
_model_server_result.job_id            0L5iSb_KWpG9JQpdMtza4Q 
_model_server_result.datetime_utc      '2024-11-14 19:34:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8urd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":501}' 
#
_entry.id    8URD 
#
_exptl.entry_id    8URD 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              746.991 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1-CIS-9-OCTADECANOYL-2-CIS-9-HEXADECANOYL PHOSPHATIDYL GLYCEROL' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8URD 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8URD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 I N N 
? 4 K N N 
#
_chem_comp.formula           'C40 H75 O10 P' 
_chem_comp.formula_weight    746.991 
_chem_comp.id                DR9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1-CIS-9-OCTADECANOYL-2-CIS-9-HEXADECANOYL PHOSPHATIDYL GLYCEROL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(2R)-3-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-[(9E)-HEXADEC-9-ENOYLOXY]PROPYL (9E)-OCTADEC-9-ENOATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CBX CBV DR9 sing 83 n n 
CBX HBX1 DR9 sing 84 n n 
CBX HBX2 DR9 sing 85 n n 
CBX HBX3 DR9 sing 86 n n 
CBV CBS DR9 sing 87 n n 
CBV HBV1 DR9 sing 88 n n 
CBV HBV2 DR9 sing 89 n n 
CBS CBH DR9 sing 90 n n 
CBS HBS1 DR9 sing 91 n n 
CBS HBS2 DR9 sing 92 n n 
CBH CAQ DR9 sing 93 n n 
CBH HBH1 DR9 sing 94 n n 
CBH HBH2 DR9 sing 95 n n 
CAQ CAP DR9 sing 96 n n 
CAQ HAQ1 DR9 sing 97 n n 
CAQ HAQ2 DR9 sing 98 n n 
CAP CAO DR9 sing 99 n n 
CAP HAP1 DR9 sing 100 n n 
CAP HAP2 DR9 sing 101 n n 
CAO CAN DR9 sing 102 n n 
CAO HAO1 DR9 sing 103 n n 
CAO HAO2 DR9 sing 104 n n 
CAN CAM DR9 sing 105 n n 
CAN HAN1 DR9 sing 106 n n 
CAN HAN2 DR9 sing 107 n n 
CAM CAL DR9 doub 108 z n 
CAM HAM DR9 sing 109 n n 
CAL CAK DR9 sing 110 n n 
CAL HAL DR9 sing 111 n n 
CAK CAJ DR9 sing 112 n n 
CAK HAK1 DR9 sing 113 n n 
CAK HAK2 DR9 sing 114 n n 
CAJ CAI DR9 sing 115 n n 
CAJ HAJ1 DR9 sing 116 n n 
CAJ HAJ2 DR9 sing 117 n n 
CAI CAH DR9 sing 118 n n 
CAI HAI1 DR9 sing 119 n n 
CAI HAI2 DR9 sing 120 n n 
CAH CAG DR9 sing 121 n n 
CAH HAH1 DR9 sing 122 n n 
CAH HAH2 DR9 sing 123 n n 
CAG CAF DR9 sing 124 n n 
CAG HAG1 DR9 sing 125 n n 
CAG HAG2 DR9 sing 126 n n 
CAF CAE DR9 sing 127 n n 
CAF HAF1 DR9 sing 128 n n 
CAF HAF2 DR9 sing 129 n n 
CAE CAD DR9 sing 130 n n 
CAE HAE1 DR9 sing 131 n n 
CAE HAE2 DR9 sing 132 n n 
CAD OAA DR9 doub 133 n n 
CAD OAC DR9 sing 134 n n 
OAC CAB DR9 sing 135 n n 
CAB CBE DR9 sing 136 n n 
CAB HAB1 DR9 sing 137 n n 
CAB HAB2 DR9 sing 138 n n 
CBE CBK DR9 sing 139 n n 
CBE OBD DR9 sing 140 n n 
CBE HBE DR9 sing 141 n n 
CBK OBL DR9 sing 142 n n 
CBK HBK1 DR9 sing 143 n n 
CBK HBK2 DR9 sing 144 n n 
OBL PBM DR9 sing 145 n n 
PBM OBU DR9 doub 146 n n 
PBM OBF DR9 sing 147 n n 
PBM OBN DR9 sing 148 n n 
OBF HBF DR9 sing 149 n n 
OBN CBO DR9 sing 150 n n 
CBO CBP DR9 sing 151 n n 
CBO HBO1 DR9 sing 152 n n 
CBO HBO2 DR9 sing 153 n n 
CBP OBG DR9 sing 154 n n 
CBP CBQ DR9 sing 155 n n 
CBP HBP DR9 sing 156 n n 
OBG HBG DR9 sing 157 n n 
CBQ OBR DR9 sing 158 n n 
CBQ HBQ1 DR9 sing 159 n n 
CBQ HBQ2 DR9 sing 160 n n 
OBR HBR DR9 sing 161 n n 
OBD CBC DR9 sing 162 n n 
CBC OBJ DR9 doub 163 n n 
CBC CBB DR9 sing 164 n n 
CBB CBA DR9 sing 165 n n 
CBB HBB1 DR9 sing 166 n n 
CBB HBB2 DR9 sing 167 n n 
CBA CAZ DR9 sing 168 n n 
CBA HBA1 DR9 sing 169 n n 
CBA HBA2 DR9 sing 170 n n 
CAZ CAY DR9 sing 171 n n 
CAZ HAZ1 DR9 sing 172 n n 
CAZ HAZ2 DR9 sing 173 n n 
CAY CAX DR9 sing 174 n n 
CAY HAY1 DR9 sing 175 n n 
CAY HAY2 DR9 sing 176 n n 
CAX CAW DR9 sing 177 n n 
CAX HAX1 DR9 sing 178 n n 
CAX HAX2 DR9 sing 179 n n 
CAW CAV DR9 sing 180 n n 
CAW HAW1 DR9 sing 181 n n 
CAW HAW2 DR9 sing 182 n n 
CAV CAU DR9 sing 183 n n 
CAV HAV1 DR9 sing 184 n n 
CAV HAV2 DR9 sing 185 n n 
CAU CAT DR9 doub 186 z n 
CAU HAU DR9 sing 187 n n 
CAT CAS DR9 sing 188 n n 
CAT HAT DR9 sing 189 n n 
CAS CAR DR9 sing 190 n n 
CAS HAS1 DR9 sing 191 n n 
CAS HAS2 DR9 sing 192 n n 
CAR CBI DR9 sing 193 n n 
CAR HAR1 DR9 sing 194 n n 
CAR HAR2 DR9 sing 195 n n 
CBI CBT DR9 sing 196 n n 
CBI HBI1 DR9 sing 197 n n 
CBI HBI2 DR9 sing 198 n n 
CBT CBW DR9 sing 199 n n 
CBT HBT1 DR9 sing 200 n n 
CBT HBT2 DR9 sing 201 n n 
CBW CBY DR9 sing 202 n n 
CBW HBW1 DR9 sing 203 n n 
CBW HBW2 DR9 sing 204 n n 
CBY HBY1 DR9 sing 205 n n 
CBY HBY2 DR9 sing 206 n n 
CBY HBY3 DR9 sing 207 n n 
#
_atom_sites.entry_id                     8URD 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 FAD A 1 501 501 FAD FAD . 
E 3 WTQ A 1 502 503 WTQ WTQ . 
F 2 FAD B 1 501 501 FAD FAD . 
G 3 WTQ B 1 502 503 WTQ WTQ . 
H 4 DR9 C 1 501 502 DR9 DR9 . 
I 4 DR9 C 1 502 502 DR9 DR9 . 
J 2 FAD C 1 503 501 FAD FAD . 
K 4 DR9 C 1 504 502 DR9 DR9 . 
L 3 WTQ C 1 505 503 WTQ WTQ . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CBX DR9 . . . H 4 109.313 110.606 127.639 1 63.42 ? CBX DR9 501 C 1 
HETATM 2 C CBV DR9 . . . H 4 109.901 111.573 128.636 1 63.26 ? CBV DR9 501 C 1 
HETATM 3 C CBS DR9 . . . H 4 110.195 110.935 129.964 1 59.74 ? CBS DR9 501 C 1 
HETATM 4 C CBH DR9 . . . H 4 111.038 109.696 129.851 1 56.79 ? CBH DR9 501 C 1 
HETATM 5 C CAQ DR9 . . . H 4 112.497 109.929 130.121 1 57.51 ? CAQ DR9 501 C 1 
HETATM 6 C CAP DR9 . . . H 4 112.817 110.212 131.563 1 59.66 ? CAP DR9 501 C 1 
HETATM 7 C CAO DR9 . . . H 4 113.944 111.206 131.76 1 63.48 ? CAO DR9 501 C 1 
HETATM 8 C CAN DR9 . . . H 4 113.499 112.55 132.234 1 62.35 ? CAN DR9 501 C 1 
HETATM 9 C CAM DR9 . . . H 4 114.637 113.493 132.458 1 59.65 ? CAM DR9 501 C 1 
HETATM 10 C CAL DR9 . . . H 4 115.845 113.337 131.994 1 60.18 ? CAL DR9 501 C 1 
HETATM 11 C CAK DR9 . . . H 4 117.062 114.034 132.512 1 62.36 ? CAK DR9 501 C 1 
HETATM 12 C CAJ DR9 . . . H 4 118.323 113.594 131.842 1 62.81 ? CAJ DR9 501 C 1 
HETATM 13 C CAI DR9 . . . H 4 118.13 113.024 130.444 1 61.61 ? CAI DR9 501 C 1 
HETATM 14 C CAH DR9 . . . H 4 119.142 113.509 129.438 1 64.71 ? CAH DR9 501 C 1 
HETATM 15 C CAG DR9 . . . H 4 118.878 114.9 128.92 1 60.31 ? CAG DR9 501 C 1 
HETATM 16 C CAF DR9 . . . H 4 119.991 115.895 129.197 1 57.59 ? CAF DR9 501 C 1 
HETATM 17 C CAE DR9 . . . H 4 121.351 115.303 129.019 1 55.7 ? CAE DR9 501 C 1 
HETATM 18 C CAD DR9 . . . H 4 122.237 115.486 130.215 1 59.57 ? CAD DR9 501 C 1 
HETATM 19 O OAA DR9 . . . H 4 122.962 116.426 130.403 1 59.93 ? OAA DR9 501 C 1 
HETATM 20 O OAC DR9 . . . H 4 122.121 114.471 131.064 1 65.42 ? OAC DR9 501 C 1 
HETATM 21 C CAB DR9 . . . H 4 122.705 114.656 132.372 1 66.77 ? CAB DR9 501 C 1 
HETATM 22 C CBE DR9 . . . H 4 121.626 114.452 133.41 1 64.96 ? CBE DR9 501 C 1 
HETATM 23 C CBK DR9 . . . H 4 120.965 115.742 133.838 1 62 ? CBK DR9 501 C 1 
HETATM 24 O OBL DR9 . . . H 4 121.555 116.209 135.079 1 69.96 ? OBL DR9 501 C 1 
HETATM 25 P PBM DR9 . . . H 4 121.894 117.768 135.247 1 75.29 ? PBM DR9 501 C 1 
HETATM 26 O OBU DR9 . . . H 4 122.871 118.14 134.166 1 61.06 ? OBU DR9 501 C 1 
HETATM 27 O OBF DR9 . . . H 4 122.229 118.027 136.69 1 59.82 ? OBF DR9 501 C 1 
HETATM 28 O OBN DR9 . . . H 4 120.491 118.48 134.928 1 68.82 ? OBN DR9 501 C 1 
HETATM 29 C CBO DR9 . . . H 4 120.451 119.578 133.979 1 63.53 ? CBO DR9 501 C 1 
HETATM 30 C CBP DR9 . . . H 4 119.491 119.247 132.859 1 68.22 ? CBP DR9 501 C 1 
HETATM 31 O OBG DR9 . . . H 4 118.604 118.211 133.279 1 67.24 ? OBG DR9 501 C 1 
HETATM 32 C CBQ DR9 . . . H 4 120.178 118.855 131.568 1 62.99 ? CBQ DR9 501 C 1 
HETATM 33 O OBR DR9 . . . H 4 121.491 118.352 131.8 1 62.71 ? OBR DR9 501 C 1 
HETATM 34 O OBD DR9 . . . H 4 122.191 113.786 134.572 1 58.09 ? OBD DR9 501 C 1 
HETATM 35 C CBC DR9 . . . H 4 121.421 112.909 135.234 1 59.04 ? CBC DR9 501 C 1 
HETATM 36 O OBJ DR9 . . . H 4 120.558 113.248 135.998 1 62.41 ? OBJ DR9 501 C 1 
HETATM 37 C CBB DR9 . . . H 4 121.769 111.483 134.926 1 61.39 ? CBB DR9 501 C 1 
HETATM 38 C CBA DR9 . . . H 4 123.021 111.029 135.599 1 59.24 ? CBA DR9 501 C 1 
HETATM 39 C CAZ DR9 . . . H 4 122.872 109.659 136.246 1 62.27 ? CAZ DR9 501 C 1 
HETATM 40 C CAY DR9 . . . H 4 122.925 109.675 137.754 1 62.92 ? CAY DR9 501 C 1 
HETATM 41 C CAX DR9 . . . H 4 123.964 108.757 138.347 1 60.83 ? CAX DR9 501 C 1 
HETATM 42 C CAW DR9 . . . H 4 123.4 107.478 138.938 1 58.97 ? CAW DR9 501 C 1 
HETATM 43 C CAV DR9 . . . H 4 123.454 107.41 140.431 1 58.36 ? CAV DR9 501 C 1 
HETATM 44 C CAU DR9 . . . H 4 123.342 106.017 140.967 1 58.25 ? CAU DR9 501 C 1 
HETATM 45 C CAT DR9 . . . H 4 122.471 105.596 141.846 1 54.5 ? CAT DR9 501 C 1 
HETATM 46 C CAS DR9 . . . H 4 121.03 105.307 141.566 1 58.37 ? CAS DR9 501 C 1 
HETATM 47 C CAR DR9 . . . H 4 120.789 104.803 140.176 1 62.04 ? CAR DR9 501 C 1 
HETATM 48 C CBI DR9 . . . H 4 119.58 105.416 139.496 1 56.74 ? CBI DR9 501 C 1 
HETATM 49 C CBT DR9 . . . H 4 118.516 105.89 140.451 1 55.39 ? CBT DR9 501 C 1 
HETATM 50 C CBW DR9 . . . H 4 117.146 106.013 139.838 1 55.16 ? CBW DR9 501 C 1 
HETATM 51 C CBY DR9 . . . H 4 117.174 106.266 138.352 1 59.65 ? CBY DR9 501 C 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           51 
#