data_8URD # _model_server_result.job_id aab1qUVyeX1PeQVWXR6bLw _model_server_result.datetime_utc '2024-11-27 22:44:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8urd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":502}' # _entry.id 8URD # _exptl.entry_id 8URD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 746.991 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1-CIS-9-OCTADECANOYL-2-CIS-9-HEXADECANOYL PHOSPHATIDYL GLYCEROL' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8URD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8URD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N ? 4 K N N # _chem_comp.formula 'C40 H75 O10 P' _chem_comp.formula_weight 746.991 _chem_comp.id DR9 _chem_comp.mon_nstd_flag . _chem_comp.name '1-CIS-9-OCTADECANOYL-2-CIS-9-HEXADECANOYL PHOSPHATIDYL GLYCEROL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R)-3-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-[(9E)-HEXADEC-9-ENOYLOXY]PROPYL (9E)-OCTADEC-9-ENOATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBX CBV DR9 sing 83 n n CBX HBX1 DR9 sing 84 n n CBX HBX2 DR9 sing 85 n n CBX HBX3 DR9 sing 86 n n CBV CBS DR9 sing 87 n n CBV HBV1 DR9 sing 88 n n CBV HBV2 DR9 sing 89 n n CBS CBH DR9 sing 90 n n CBS HBS1 DR9 sing 91 n n CBS HBS2 DR9 sing 92 n n CBH CAQ DR9 sing 93 n n CBH HBH1 DR9 sing 94 n n CBH HBH2 DR9 sing 95 n n CAQ CAP DR9 sing 96 n n CAQ HAQ1 DR9 sing 97 n n CAQ HAQ2 DR9 sing 98 n n CAP CAO DR9 sing 99 n n CAP HAP1 DR9 sing 100 n n CAP HAP2 DR9 sing 101 n n CAO CAN DR9 sing 102 n n CAO HAO1 DR9 sing 103 n n CAO HAO2 DR9 sing 104 n n CAN CAM DR9 sing 105 n n CAN HAN1 DR9 sing 106 n n CAN HAN2 DR9 sing 107 n n CAM CAL DR9 doub 108 z n CAM HAM DR9 sing 109 n n CAL CAK DR9 sing 110 n n CAL HAL DR9 sing 111 n n CAK CAJ DR9 sing 112 n n CAK HAK1 DR9 sing 113 n n CAK HAK2 DR9 sing 114 n n CAJ CAI DR9 sing 115 n n CAJ HAJ1 DR9 sing 116 n n CAJ HAJ2 DR9 sing 117 n n CAI CAH DR9 sing 118 n n CAI HAI1 DR9 sing 119 n n CAI HAI2 DR9 sing 120 n n CAH CAG DR9 sing 121 n n CAH HAH1 DR9 sing 122 n n CAH HAH2 DR9 sing 123 n n CAG CAF DR9 sing 124 n n CAG HAG1 DR9 sing 125 n n CAG HAG2 DR9 sing 126 n n CAF CAE DR9 sing 127 n n CAF HAF1 DR9 sing 128 n n CAF HAF2 DR9 sing 129 n n CAE CAD DR9 sing 130 n n CAE HAE1 DR9 sing 131 n n CAE HAE2 DR9 sing 132 n n CAD OAA DR9 doub 133 n n CAD OAC DR9 sing 134 n n OAC CAB DR9 sing 135 n n CAB CBE DR9 sing 136 n n CAB HAB1 DR9 sing 137 n n CAB HAB2 DR9 sing 138 n n CBE CBK DR9 sing 139 n n CBE OBD DR9 sing 140 n n CBE HBE DR9 sing 141 n n CBK OBL DR9 sing 142 n n CBK HBK1 DR9 sing 143 n n CBK HBK2 DR9 sing 144 n n OBL PBM DR9 sing 145 n n PBM OBU DR9 doub 146 n n PBM OBF DR9 sing 147 n n PBM OBN DR9 sing 148 n n OBF HBF DR9 sing 149 n n OBN CBO DR9 sing 150 n n CBO CBP DR9 sing 151 n n CBO HBO1 DR9 sing 152 n n CBO HBO2 DR9 sing 153 n n CBP OBG DR9 sing 154 n n CBP CBQ DR9 sing 155 n n CBP HBP DR9 sing 156 n n OBG HBG DR9 sing 157 n n CBQ OBR DR9 sing 158 n n CBQ HBQ1 DR9 sing 159 n n CBQ HBQ2 DR9 sing 160 n n OBR HBR DR9 sing 161 n n OBD CBC DR9 sing 162 n n CBC OBJ DR9 doub 163 n n CBC CBB DR9 sing 164 n n CBB CBA DR9 sing 165 n n CBB HBB1 DR9 sing 166 n n CBB HBB2 DR9 sing 167 n n CBA CAZ DR9 sing 168 n n CBA HBA1 DR9 sing 169 n n CBA HBA2 DR9 sing 170 n n CAZ CAY DR9 sing 171 n n CAZ HAZ1 DR9 sing 172 n n CAZ HAZ2 DR9 sing 173 n n CAY CAX DR9 sing 174 n n CAY HAY1 DR9 sing 175 n n CAY HAY2 DR9 sing 176 n n CAX CAW DR9 sing 177 n n CAX HAX1 DR9 sing 178 n n CAX HAX2 DR9 sing 179 n n CAW CAV DR9 sing 180 n n CAW HAW1 DR9 sing 181 n n CAW HAW2 DR9 sing 182 n n CAV CAU DR9 sing 183 n n CAV HAV1 DR9 sing 184 n n CAV HAV2 DR9 sing 185 n n CAU CAT DR9 doub 186 z n CAU HAU DR9 sing 187 n n CAT CAS DR9 sing 188 n n CAT HAT DR9 sing 189 n n CAS CAR DR9 sing 190 n n CAS HAS1 DR9 sing 191 n n CAS HAS2 DR9 sing 192 n n CAR CBI DR9 sing 193 n n CAR HAR1 DR9 sing 194 n n CAR HAR2 DR9 sing 195 n n CBI CBT DR9 sing 196 n n CBI HBI1 DR9 sing 197 n n CBI HBI2 DR9 sing 198 n n CBT CBW DR9 sing 199 n n CBT HBT1 DR9 sing 200 n n CBT HBT2 DR9 sing 201 n n CBW CBY DR9 sing 202 n n CBW HBW1 DR9 sing 203 n n CBW HBW2 DR9 sing 204 n n CBY HBY1 DR9 sing 205 n n CBY HBY2 DR9 sing 206 n n CBY HBY3 DR9 sing 207 n n # _atom_sites.entry_id 8URD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 FAD A 1 501 501 FAD FAD . E 3 WTQ A 1 502 503 WTQ WTQ . F 2 FAD B 1 501 501 FAD FAD . G 3 WTQ B 1 502 503 WTQ WTQ . H 4 DR9 C 1 501 502 DR9 DR9 . I 4 DR9 C 1 502 502 DR9 DR9 . J 2 FAD C 1 503 501 FAD FAD . K 4 DR9 C 1 504 502 DR9 DR9 . L 3 WTQ C 1 505 503 WTQ WTQ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBX DR9 . . . I 4 117.973 114.907 118.557 1 46.24 ? CBX DR9 502 C 1 HETATM 2 C CBV DR9 . . . I 4 119.145 115.801 118.867 1 48.17 ? CBV DR9 502 C 1 HETATM 3 C CBS DR9 . . . I 4 120.472 115.201 118.484 1 51.28 ? CBS DR9 502 C 1 HETATM 4 C CBH DR9 . . . I 4 121.13 114.399 119.577 1 46.71 ? CBH DR9 502 C 1 HETATM 5 C CAQ DR9 . . . I 4 122.621 114.245 119.42 1 50.03 ? CAQ DR9 502 C 1 HETATM 6 C CAP DR9 . . . I 4 123.057 113.76 118.061 1 49.77 ? CAP DR9 502 C 1 HETATM 7 C CAO DR9 . . . I 4 123.698 112.383 118.066 1 47.44 ? CAO DR9 502 C 1 HETATM 8 C CAN DR9 . . . I 4 123.792 111.742 116.719 1 51.39 ? CAN DR9 502 C 1 HETATM 9 C CAM DR9 . . . I 4 123.306 110.327 116.699 1 54.74 ? CAM DR9 502 C 1 HETATM 10 C CAL DR9 . . . I 4 122.24 109.901 116.077 1 52.56 ? CAL DR9 502 C 1 HETATM 11 C CAK DR9 . . . I 4 120.941 110.636 115.979 1 52.72 ? CAK DR9 502 C 1 HETATM 12 C CAJ DR9 . . . I 4 120.561 110.965 114.574 1 56 ? CAJ DR9 502 C 1 HETATM 13 C CAI DR9 . . . I 4 120.013 112.373 114.387 1 50.55 ? CAI DR9 502 C 1 HETATM 14 C CAH DR9 . . . I 4 118.572 112.532 114.793 1 49.62 ? CAH DR9 502 C 1 HETATM 15 C CAG DR9 . . . I 4 117.579 112.217 113.703 1 54.39 ? CAG DR9 502 C 1 HETATM 16 C CAF DR9 . . . I 4 116.435 113.211 113.597 1 50.16 ? CAF DR9 502 C 1 HETATM 17 C CAE DR9 . . . I 4 115.348 112.941 114.59 1 54.7 ? CAE DR9 502 C 1 HETATM 18 C CAD DR9 . . . I 4 113.98 113.342 114.115 1 53.56 ? CAD DR9 502 C 1 HETATM 19 O OAA DR9 . . . I 4 113.709 114.406 113.63 1 50.51 ? OAA DR9 502 C 1 HETATM 20 O OAC DR9 . . . I 4 113.083 112.377 114.304 1 50.91 ? OAC DR9 502 C 1 HETATM 21 C CAB DR9 . . . I 4 113.585 111.023 114.374 1 57.56 ? CAB DR9 502 C 1 HETATM 22 C CBE DR9 . . . I 4 113.214 110.292 113.103 1 54.04 ? CBE DR9 502 C 1 HETATM 23 C CBK DR9 . . . I 4 111.998 110.863 112.415 1 49.58 ? CBK DR9 502 C 1 HETATM 24 O OBL DR9 . . . I 4 112.409 111.473 111.164 1 56.24 ? OBL DR9 502 C 1 HETATM 25 P PBM DR9 . . . I 4 111.937 112.971 110.841 1 70.58 ? PBM DR9 502 C 1 HETATM 26 O OBU DR9 . . . I 4 110.899 112.909 109.757 1 53.35 ? OBU DR9 502 C 1 HETATM 27 O OBF DR9 . . . I 4 113.16 113.828 110.663 1 53.47 ? OBF DR9 502 C 1 HETATM 28 O OBN DR9 . . . I 4 111.227 113.391 112.219 1 60.36 ? OBN DR9 502 C 1 HETATM 29 C CBO DR9 . . . I 4 110.257 114.472 112.232 1 55.16 ? CBO DR9 502 C 1 HETATM 30 C CBP DR9 . . . I 4 109.534 114.436 113.558 1 60.26 ? CBP DR9 502 C 1 HETATM 31 O OBG DR9 . . . I 4 110.282 115.17 114.526 1 50.37 ? OBG DR9 502 C 1 HETATM 32 C CBQ DR9 . . . I 4 109.266 113.033 114.06 1 59.87 ? CBQ DR9 502 C 1 HETATM 33 O OBR DR9 . . . I 4 110.344 112.545 114.854 1 59.56 ? OBR DR9 502 C 1 HETATM 34 O OBD DR9 . . . I 4 112.955 108.89 113.387 1 48.95 ? OBD DR9 502 C 1 HETATM 35 C CBC DR9 . . . I 4 113.488 107.973 112.565 1 51.54 ? CBC DR9 502 C 1 HETATM 36 O OBJ DR9 . . . I 4 114.14 108.275 111.602 1 57.34 ? OBJ DR9 502 C 1 HETATM 37 C CBB DR9 . . . I 4 113.187 106.561 112.977 1 50.25 ? CBB DR9 502 C 1 HETATM 38 C CBA DR9 . . . I 4 113.964 105.542 112.208 1 52.41 ? CBA DR9 502 C 1 HETATM 39 C CAZ DR9 . . . I 4 113.149 104.901 111.092 1 56.86 ? CAZ DR9 502 C 1 HETATM 40 C CAY DR9 . . . I 4 113.862 103.788 110.362 1 48.37 ? CAY DR9 502 C 1 HETATM 41 C CAX DR9 . . . I 4 112.958 102.675 109.896 1 42.93 ? CAX DR9 502 C 1 HETATM 42 C CAW DR9 . . . I 4 113.583 101.294 109.958 1 45.75 ? CAW DR9 502 C 1 HETATM 43 C CAV DR9 . . . I 4 113.793 100.653 108.622 1 53.55 ? CAV DR9 502 C 1 HETATM 44 C CAU DR9 . . . I 4 114.863 99.607 108.625 1 48.21 ? CAU DR9 502 C 1 HETATM 45 C CAT DR9 . . . I 4 115.862 99.532 107.787 1 41.64 ? CAT DR9 502 C 1 HETATM 46 C CAS DR9 . . . I 4 117.302 99.721 108.145 1 39.92 ? CAS DR9 502 C 1 HETATM 47 C CAR DR9 . . . I 4 117.534 99.743 109.62 1 49.39 ? CAR DR9 502 C 1 HETATM 48 C CBI DR9 . . . I 4 118.3 100.957 110.113 1 42.8 ? CBI DR9 502 C 1 HETATM 49 C CBT DR9 . . . I 4 119.115 101.643 109.049 1 46.65 ? CBT DR9 502 C 1 HETATM 50 C CBW DR9 . . . I 4 120.19 102.552 109.582 1 53.73 ? CBW DR9 502 C 1 HETATM 51 C CBY DR9 . . . I 4 120.006 102.943 111.025 1 48.11 ? CBY DR9 502 C 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 51 #