data_8URD
#
_model_server_result.job_id            8F6xImbJ6KpT3IGncLMnjA 
_model_server_result.datetime_utc      '2024-11-30 19:16:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8urd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":504}' 
#
_entry.id    8URD 
#
_exptl.entry_id    8URD 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              746.991 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1-CIS-9-OCTADECANOYL-2-CIS-9-HEXADECANOYL PHOSPHATIDYL GLYCEROL' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8URD 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8URD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 I N N 
? 4 K N N 
#
_chem_comp.formula           'C40 H75 O10 P' 
_chem_comp.formula_weight    746.991 
_chem_comp.id                DR9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1-CIS-9-OCTADECANOYL-2-CIS-9-HEXADECANOYL PHOSPHATIDYL GLYCEROL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(2R)-3-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-[(9E)-HEXADEC-9-ENOYLOXY]PROPYL (9E)-OCTADEC-9-ENOATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CBX CBV DR9 sing 83 n n 
CBX HBX1 DR9 sing 84 n n 
CBX HBX2 DR9 sing 85 n n 
CBX HBX3 DR9 sing 86 n n 
CBV CBS DR9 sing 87 n n 
CBV HBV1 DR9 sing 88 n n 
CBV HBV2 DR9 sing 89 n n 
CBS CBH DR9 sing 90 n n 
CBS HBS1 DR9 sing 91 n n 
CBS HBS2 DR9 sing 92 n n 
CBH CAQ DR9 sing 93 n n 
CBH HBH1 DR9 sing 94 n n 
CBH HBH2 DR9 sing 95 n n 
CAQ CAP DR9 sing 96 n n 
CAQ HAQ1 DR9 sing 97 n n 
CAQ HAQ2 DR9 sing 98 n n 
CAP CAO DR9 sing 99 n n 
CAP HAP1 DR9 sing 100 n n 
CAP HAP2 DR9 sing 101 n n 
CAO CAN DR9 sing 102 n n 
CAO HAO1 DR9 sing 103 n n 
CAO HAO2 DR9 sing 104 n n 
CAN CAM DR9 sing 105 n n 
CAN HAN1 DR9 sing 106 n n 
CAN HAN2 DR9 sing 107 n n 
CAM CAL DR9 doub 108 z n 
CAM HAM DR9 sing 109 n n 
CAL CAK DR9 sing 110 n n 
CAL HAL DR9 sing 111 n n 
CAK CAJ DR9 sing 112 n n 
CAK HAK1 DR9 sing 113 n n 
CAK HAK2 DR9 sing 114 n n 
CAJ CAI DR9 sing 115 n n 
CAJ HAJ1 DR9 sing 116 n n 
CAJ HAJ2 DR9 sing 117 n n 
CAI CAH DR9 sing 118 n n 
CAI HAI1 DR9 sing 119 n n 
CAI HAI2 DR9 sing 120 n n 
CAH CAG DR9 sing 121 n n 
CAH HAH1 DR9 sing 122 n n 
CAH HAH2 DR9 sing 123 n n 
CAG CAF DR9 sing 124 n n 
CAG HAG1 DR9 sing 125 n n 
CAG HAG2 DR9 sing 126 n n 
CAF CAE DR9 sing 127 n n 
CAF HAF1 DR9 sing 128 n n 
CAF HAF2 DR9 sing 129 n n 
CAE CAD DR9 sing 130 n n 
CAE HAE1 DR9 sing 131 n n 
CAE HAE2 DR9 sing 132 n n 
CAD OAA DR9 doub 133 n n 
CAD OAC DR9 sing 134 n n 
OAC CAB DR9 sing 135 n n 
CAB CBE DR9 sing 136 n n 
CAB HAB1 DR9 sing 137 n n 
CAB HAB2 DR9 sing 138 n n 
CBE CBK DR9 sing 139 n n 
CBE OBD DR9 sing 140 n n 
CBE HBE DR9 sing 141 n n 
CBK OBL DR9 sing 142 n n 
CBK HBK1 DR9 sing 143 n n 
CBK HBK2 DR9 sing 144 n n 
OBL PBM DR9 sing 145 n n 
PBM OBU DR9 doub 146 n n 
PBM OBF DR9 sing 147 n n 
PBM OBN DR9 sing 148 n n 
OBF HBF DR9 sing 149 n n 
OBN CBO DR9 sing 150 n n 
CBO CBP DR9 sing 151 n n 
CBO HBO1 DR9 sing 152 n n 
CBO HBO2 DR9 sing 153 n n 
CBP OBG DR9 sing 154 n n 
CBP CBQ DR9 sing 155 n n 
CBP HBP DR9 sing 156 n n 
OBG HBG DR9 sing 157 n n 
CBQ OBR DR9 sing 158 n n 
CBQ HBQ1 DR9 sing 159 n n 
CBQ HBQ2 DR9 sing 160 n n 
OBR HBR DR9 sing 161 n n 
OBD CBC DR9 sing 162 n n 
CBC OBJ DR9 doub 163 n n 
CBC CBB DR9 sing 164 n n 
CBB CBA DR9 sing 165 n n 
CBB HBB1 DR9 sing 166 n n 
CBB HBB2 DR9 sing 167 n n 
CBA CAZ DR9 sing 168 n n 
CBA HBA1 DR9 sing 169 n n 
CBA HBA2 DR9 sing 170 n n 
CAZ CAY DR9 sing 171 n n 
CAZ HAZ1 DR9 sing 172 n n 
CAZ HAZ2 DR9 sing 173 n n 
CAY CAX DR9 sing 174 n n 
CAY HAY1 DR9 sing 175 n n 
CAY HAY2 DR9 sing 176 n n 
CAX CAW DR9 sing 177 n n 
CAX HAX1 DR9 sing 178 n n 
CAX HAX2 DR9 sing 179 n n 
CAW CAV DR9 sing 180 n n 
CAW HAW1 DR9 sing 181 n n 
CAW HAW2 DR9 sing 182 n n 
CAV CAU DR9 sing 183 n n 
CAV HAV1 DR9 sing 184 n n 
CAV HAV2 DR9 sing 185 n n 
CAU CAT DR9 doub 186 z n 
CAU HAU DR9 sing 187 n n 
CAT CAS DR9 sing 188 n n 
CAT HAT DR9 sing 189 n n 
CAS CAR DR9 sing 190 n n 
CAS HAS1 DR9 sing 191 n n 
CAS HAS2 DR9 sing 192 n n 
CAR CBI DR9 sing 193 n n 
CAR HAR1 DR9 sing 194 n n 
CAR HAR2 DR9 sing 195 n n 
CBI CBT DR9 sing 196 n n 
CBI HBI1 DR9 sing 197 n n 
CBI HBI2 DR9 sing 198 n n 
CBT CBW DR9 sing 199 n n 
CBT HBT1 DR9 sing 200 n n 
CBT HBT2 DR9 sing 201 n n 
CBW CBY DR9 sing 202 n n 
CBW HBW1 DR9 sing 203 n n 
CBW HBW2 DR9 sing 204 n n 
CBY HBY1 DR9 sing 205 n n 
CBY HBY2 DR9 sing 206 n n 
CBY HBY3 DR9 sing 207 n n 
#
_atom_sites.entry_id                     8URD 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 FAD A 1 501 501 FAD FAD . 
E 3 WTQ A 1 502 503 WTQ WTQ . 
F 2 FAD B 1 501 501 FAD FAD . 
G 3 WTQ B 1 502 503 WTQ WTQ . 
H 4 DR9 C 1 501 502 DR9 DR9 . 
I 4 DR9 C 1 502 502 DR9 DR9 . 
J 2 FAD C 1 503 501 FAD FAD . 
K 4 DR9 C 1 504 502 DR9 DR9 . 
L 3 WTQ C 1 505 503 WTQ WTQ . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CBX DR9 . . . K 4 116.122 110.989 117.963 1 51.87 ? CBX DR9 504 C 1 
HETATM 2 C CBV DR9 . . . K 4 114.894 111.831 118.206 1 54.06 ? CBV DR9 504 C 1 
HETATM 3 C CBS DR9 . . . K 4 113.812 111.131 118.986 1 55.6 ? CBS DR9 504 C 1 
HETATM 4 C CBH DR9 . . . K 4 112.413 111.584 118.651 1 55.43 ? CBH DR9 504 C 1 
HETATM 5 C CAQ DR9 . . . K 4 112.35 112.857 117.845 1 55.87 ? CAQ DR9 504 C 1 
HETATM 6 C CAP DR9 . . . K 4 111.12 113.691 118.095 1 55.69 ? CAP DR9 504 C 1 
HETATM 7 C CAO DR9 . . . K 4 111.165 114.498 119.38 1 52.76 ? CAO DR9 504 C 1 
HETATM 8 C CAN DR9 . . . K 4 110.653 115.896 119.251 1 56.7 ? CAN DR9 504 C 1 
HETATM 9 C CAM DR9 . . . K 4 111.733 116.9 118.996 1 57.91 ? CAM DR9 504 C 1 
HETATM 10 C CAL DR9 . . . K 4 112.966 116.814 119.414 1 58.54 ? CAL DR9 504 C 1 
HETATM 11 C CAK DR9 . . . K 4 114.166 116.68 118.533 1 48.91 ? CAK DR9 504 C 1 
HETATM 12 C CAJ DR9 . . . K 4 114.035 117.442 117.258 1 54.63 ? CAJ DR9 504 C 1 
HETATM 13 C CAI DR9 . . . K 4 114.503 116.676 116.031 1 57.98 ? CAI DR9 504 C 1 
HETATM 14 C CAH DR9 . . . K 4 115.957 116.878 115.694 1 57.32 ? CAH DR9 504 C 1 
HETATM 15 C CAG DR9 . . . K 4 116.241 116.941 114.215 1 52.91 ? CAG DR9 504 C 1 
HETATM 16 C CAF DR9 . . . K 4 117.683 116.642 113.843 1 56.4 ? CAF DR9 504 C 1 
HETATM 17 C CAE DR9 . . . K 4 118.543 116.409 115.042 1 55.27 ? CAE DR9 504 C 1 
HETATM 18 C CAD DR9 . . . K 4 120.012 116.415 114.732 1 57.86 ? CAD DR9 504 C 1 
HETATM 19 O OAA DR9 . . . K 4 120.507 116.031 113.709 1 55.87 ? OAA DR9 504 C 1 
HETATM 20 O OAC DR9 . . . K 4 120.718 116.899 115.747 1 63.54 ? OAC DR9 504 C 1 
HETATM 21 C CAB DR9 . . . K 4 121.761 117.842 115.419 1 57.74 ? CAB DR9 504 C 1 
HETATM 22 C CBE DR9 . . . K 4 121.153 119.221 115.304 1 60.27 ? CBE DR9 504 C 1 
HETATM 23 C CBK DR9 . . . K 4 121.42 119.872 113.967 1 57.54 ? CBK DR9 504 C 1 
HETATM 24 O OBL DR9 . . . K 4 121.743 118.844 112.995 1 59.74 ? OBL DR9 504 C 1 
HETATM 25 P PBM DR9 . . . K 4 121.833 119.239 111.442 1 74.66 ? PBM DR9 504 C 1 
HETATM 26 O OBU DR9 . . . K 4 120.609 120.025 111.061 1 54.65 ? OBU DR9 504 C 1 
HETATM 27 O OBF DR9 . . . K 4 122.2 118.003 110.671 1 62.78 ? OBF DR9 504 C 1 
HETATM 28 O OBN DR9 . . . K 4 123.092 120.233 111.406 1 62.37 ? OBN DR9 504 C 1 
HETATM 29 C CBO DR9 . . . K 4 124.417 119.708 111.689 1 58.76 ? CBO DR9 504 C 1 
HETATM 30 C CBP DR9 . . . K 4 125.414 120.396 110.786 1 60.5 ? CBP DR9 504 C 1 
HETATM 31 O OBG DR9 . . . K 4 125.522 121.768 111.16 1 53.35 ? OBG DR9 504 C 1 
HETATM 32 C CBQ DR9 . . . K 4 125.073 120.276 109.316 1 61 ? CBQ DR9 504 C 1 
HETATM 33 O OBR DR9 . . . K 4 124.334 119.088 109.044 1 58.38 ? OBR DR9 504 C 1 
HETATM 34 O OBD DR9 . . . K 4 121.683 120.064 116.364 1 53.4 ? OBD DR9 504 C 1 
HETATM 35 C CBC DR9 . . . K 4 120.918 121.062 116.836 1 52.72 ? CBC DR9 504 C 1 
HETATM 36 O OBJ DR9 . . . K 4 119.874 121.387 116.337 1 57.44 ? OBJ DR9 504 C 1 
HETATM 37 C CBB DR9 . . . K 4 121.512 121.722 118.044 1 54.25 ? CBB DR9 504 C 1 
HETATM 38 C CBA DR9 . . . K 4 120.67 122.829 118.589 1 54.1 ? CBA DR9 504 C 1 
HETATM 39 C CAZ DR9 . . . K 4 121.425 124.149 118.666 1 59.51 ? CAZ DR9 504 C 1 
HETATM 40 C CAY DR9 . . . K 4 120.685 125.322 118.071 1 59.56 ? CAY DR9 504 C 1 
HETATM 41 C CAX DR9 . . . K 4 121.322 126.661 118.344 1 53.1 ? CAX DR9 504 C 1 
HETATM 42 C CAW DR9 . . . K 4 120.507 127.569 119.247 1 52.62 ? CAW DR9 504 C 1 
HETATM 43 C CAV DR9 . . . K 4 120.892 129.012 119.176 1 56.4 ? CAV DR9 504 C 1 
HETATM 44 C CAU DR9 . . . K 4 119.745 129.917 118.851 1 53.31 ? CAU DR9 504 C 1 
HETATM 45 C CAT DR9 . . . K 4 118.754 130.213 119.651 1 51.18 ? CAT DR9 504 C 1 
HETATM 46 C CAS DR9 . . . K 4 117.331 130.419 119.236 1 48.16 ? CAS DR9 504 C 1 
HETATM 47 C CAR DR9 . . . K 4 116.351 130.069 120.307 1 50.33 ? CAR DR9 504 C 1 
HETATM 48 C CBI DR9 . . . K 4 115.896 128.623 120.282 1 48.8 ? CBI DR9 504 C 1 
HETATM 49 C CBT DR9 . . . K 4 115.141 128.236 119.037 1 49.16 ? CBT DR9 504 C 1 
HETATM 50 C CBW DR9 . . . K 4 114.149 127.119 119.224 1 51.82 ? CBW DR9 504 C 1 
HETATM 51 C CBY DR9 . . . K 4 114.415 126.265 120.44 1 50.85 ? CBY DR9 504 C 1 
#
_model_server_stats.io_time_ms              45 
_model_server_stats.parse_time_ms           42 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           812 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           51 
#