data_8URD # _model_server_result.job_id ucCcYxOgPCljWD7rgl2T5Q _model_server_result.datetime_utc '2024-11-30 19:16:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8urd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":505}' # _entry.id 8URD # _exptl.entry_id 8URD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 111.099 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description pyridine-2,6-diol _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8URD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8URD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 L N N # _chem_comp.formula 'C5 H5 N O2' _chem_comp.formula_weight 111.099 _chem_comp.id WTQ _chem_comp.mon_nstd_flag . _chem_comp.name pyridine-2,6-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 O01 WTQ sing 590 n n C03 C02 WTQ doub 591 n y C04 C03 WTQ sing 592 n y C05 C04 WTQ doub 593 n y C06 C05 WTQ sing 594 n y O07 C06 WTQ sing 595 n n N08 C06 WTQ doub 596 n y C02 N08 WTQ sing 597 n y C03 H031 WTQ sing 598 n n C04 H041 WTQ sing 599 n n C05 H051 WTQ sing 600 n n O01 H011 WTQ sing 601 n n O07 H071 WTQ sing 602 n n # _atom_sites.entry_id 8URD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 FAD A 1 501 501 FAD FAD . E 3 WTQ A 1 502 503 WTQ WTQ . F 2 FAD B 1 501 501 FAD FAD . G 3 WTQ B 1 502 503 WTQ WTQ . H 4 DR9 C 1 501 502 DR9 DR9 . I 4 DR9 C 1 502 502 DR9 DR9 . J 2 FAD C 1 503 501 FAD FAD . K 4 DR9 C 1 504 502 DR9 DR9 . L 3 WTQ C 1 505 503 WTQ WTQ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 WTQ . . . L 3 111.319 139.738 116.752 1 59.97 ? C02 WTQ 505 C 1 HETATM 2 C C03 WTQ . . . L 3 110.691 139.328 115.572 1 59.46 ? C03 WTQ 505 C 1 HETATM 3 C C04 WTQ . . . L 3 111.277 138.327 114.797 1 60.17 ? C04 WTQ 505 C 1 HETATM 4 C C05 WTQ . . . L 3 112.48 137.747 115.207 1 63.37 ? C05 WTQ 505 C 1 HETATM 5 C C06 WTQ . . . L 3 113.081 138.181 116.396 1 64.43 ? C06 WTQ 505 C 1 HETATM 6 N N08 WTQ . . . L 3 112.491 139.161 117.133 1 65.29 ? N08 WTQ 505 C 1 HETATM 7 O O01 WTQ . . . L 3 110.747 140.737 117.532 1 60.12 ? O01 WTQ 505 C 1 HETATM 8 O O07 WTQ . . . L 3 114.28 137.622 116.83 1 58.79 ? O07 WTQ 505 C 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 8 #