data_8URT # _model_server_result.job_id R8etfC5T54vZg32_oULwsA _model_server_result.datetime_utc '2024-12-05 09:54:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8urt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1003}' # _entry.id 8URT # _exptl.entry_id 8URT _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 787.121 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8URT _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8URT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 1 1_555 A N GLY 2 A GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 B C ACE 1 B ACE 1 1_555 B N GLY 2 B GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A OD1 ASP 96 A ASP 96 1_555 C MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc2 A OD1 ASP 96 A ASP 96 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc3 A OD2 ASP 96 A ASP 96 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc4 A OD2 ASP 117 A ASP 117 1_555 C MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc5 A OD1 ASP 121 A ASP 121 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc6 B OH TYR 92 B TYR 92 1_555 L MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc7 B O ASP 96 B ASP 96 1_555 K MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? metalc ? metalc8 B OD1 ASP 96 B ASP 96 1_555 K MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? metalc ? metalc9 B OD1 ASP 99 B ASP 99 1_555 K MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc10 B OD2 ASP 99 B ASP 99 1_555 K MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc11 B OD2 ASP 117 B ASP 117 1_555 K MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C44 H85 N O8 P 1' _chem_comp.formula_weight 787.121 _chem_comp.id PCW _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (Z,Z)-4-HYDROXY-N,N,N-TRIMETHYL-10-OXO-7-[(1-OXO-9-OCTADECENYL)OXY]-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-18-EN-1-AMINIUM-4-OXIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PCW sing 291 n n C1 O3P PCW sing 292 n n C1 H11 PCW sing 293 n n C1 H12 PCW sing 294 n n C2 C3 PCW sing 295 n n C2 O2 PCW sing 296 n n C2 H2 PCW sing 297 n n C3 O3 PCW sing 298 n n C3 H31 PCW sing 299 n n C3 H32 PCW sing 300 n n C4 C5 PCW sing 301 n n C4 O4P PCW sing 302 n n C4 H41 PCW sing 303 n n C4 H42 PCW sing 304 n n C5 N PCW sing 305 n n C5 H51 PCW sing 306 n n C5 H52 PCW sing 307 n n C6 N PCW sing 308 n n C6 H61 PCW sing 309 n n C6 H62 PCW sing 310 n n C6 H63 PCW sing 311 n n C7 N PCW sing 312 n n C7 H71 PCW sing 313 n n C7 H72 PCW sing 314 n n C7 H73 PCW sing 315 n n C8 N PCW sing 316 n n C8 H81 PCW sing 317 n n C8 H82 PCW sing 318 n n C8 H83 PCW sing 319 n n C11 C12 PCW sing 320 n n C11 O3 PCW sing 321 n n C11 O11 PCW doub 322 n n C12 C13 PCW sing 323 n n C12 H121 PCW sing 324 n n C12 H122 PCW sing 325 n n C13 C14 PCW sing 326 n n C13 H131 PCW sing 327 n n C13 H132 PCW sing 328 n n C14 C15 PCW sing 329 n n C14 H141 PCW sing 330 n n C14 H142 PCW sing 331 n n C15 C16 PCW sing 332 n n C15 H151 PCW sing 333 n n C15 H152 PCW sing 334 n n C16 C17 PCW sing 335 n n C16 H161 PCW sing 336 n n C16 H162 PCW sing 337 n n C17 C18 PCW sing 338 n n C17 H171 PCW sing 339 n n C17 H172 PCW sing 340 n n C18 C19 PCW sing 341 n n C18 H181 PCW sing 342 n n C18 H182 PCW sing 343 n n C19 C20 PCW doub 344 z n C19 H19 PCW sing 345 n n C20 C21 PCW sing 346 n n C20 H20 PCW sing 347 n n C21 C22 PCW sing 348 n n C21 H211 PCW sing 349 n n C21 H212 PCW sing 350 n n C22 C23 PCW sing 351 n n C22 H221 PCW sing 352 n n C22 H222 PCW sing 353 n n C23 C24 PCW sing 354 n n C23 H231 PCW sing 355 n n C23 H232 PCW sing 356 n n C24 C25 PCW sing 357 n n C24 H241 PCW sing 358 n n C24 H242 PCW sing 359 n n C25 C26 PCW sing 360 n n C25 H251 PCW sing 361 n n C25 H252 PCW sing 362 n n C26 C27 PCW sing 363 n n C26 H261 PCW sing 364 n n C26 H262 PCW sing 365 n n C27 C28 PCW sing 366 n n C27 H271 PCW sing 367 n n C27 H272 PCW sing 368 n n C28 H281 PCW sing 369 n n C28 H282 PCW sing 370 n n C28 H283 PCW sing 371 n n C31 C32 PCW sing 372 n n C31 O2 PCW sing 373 n n C31 O31 PCW doub 374 n n C32 C33 PCW sing 375 n n C32 H321 PCW sing 376 n n C32 H322 PCW sing 377 n n C33 C34 PCW sing 378 n n C33 H331 PCW sing 379 n n C33 H332 PCW sing 380 n n C34 C35 PCW sing 381 n n C34 H341 PCW sing 382 n n C34 H342 PCW sing 383 n n C35 C36 PCW sing 384 n n C35 H351 PCW sing 385 n n C35 H352 PCW sing 386 n n C36 C37 PCW sing 387 n n C36 H361 PCW sing 388 n n C36 H362 PCW sing 389 n n C37 C38 PCW sing 390 n n C37 H371 PCW sing 391 n n C37 H372 PCW sing 392 n n C38 C39 PCW sing 393 n n C38 H381 PCW sing 394 n n C38 H382 PCW sing 395 n n C39 C40 PCW doub 396 z n C39 H39 PCW sing 397 n n C40 C41 PCW sing 398 n n C40 H40 PCW sing 399 n n C41 C42 PCW sing 400 n n C41 H411 PCW sing 401 n n C41 H412 PCW sing 402 n n C42 C43 PCW sing 403 n n C42 H421 PCW sing 404 n n C42 H422 PCW sing 405 n n C43 C44 PCW sing 406 n n C43 H431 PCW sing 407 n n C43 H432 PCW sing 408 n n C44 C45 PCW sing 409 n n C44 H441 PCW sing 410 n n C44 H442 PCW sing 411 n n C45 C46 PCW sing 412 n n C45 H451 PCW sing 413 n n C45 H452 PCW sing 414 n n C46 C47 PCW sing 415 n n C46 H461 PCW sing 416 n n C46 H462 PCW sing 417 n n C47 C48 PCW sing 418 n n C47 H471 PCW sing 419 n n C47 H472 PCW sing 420 n n C48 H481 PCW sing 421 n n C48 H482 PCW sing 422 n n C48 H483 PCW sing 423 n n O1P P PCW sing 424 n n O1P H1P PCW sing 425 n n O2P P PCW doub 426 n n O3P P PCW sing 427 n n O4P P PCW sing 428 n n # _atom_sites.entry_id 8URT _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 1001 1001 MG MG . D 2 MG A 1 1002 1002 MG MG . E 3 PCW A 1 1003 1005 PCW PCW . F 3 PCW A 1 1004 1006 PCW PCW . G 4 CTI A 1 1005 1009 CTI CTI . H 3 PCW A 1 1006 1006 PCW PCW . I 3 PCW A 1 1007 1007 PCW PCW . J 3 PCW B 1 401 1007 PCW PCW . K 2 MG B 1 402 1001 MG MG . L 2 MG B 1 403 1002 MG MG . M 3 PCW B 1 404 1005 PCW PCW . N 4 CTI B 1 405 1009 CTI CTI . O 5 HOH A 1 1101 1008 HOH HOH . P 5 HOH B 1 501 1008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PCW . . . E 3 150.792 138.404 136.339 1 63.34 ? C1 PCW 1003 A 1 HETATM 2 C C2 PCW . . . E 3 149.827 139.043 137.345 1 66.16 ? C2 PCW 1003 A 1 HETATM 3 C C3 PCW . . . E 3 150.339 140.435 137.717 1 69.43 ? C3 PCW 1003 A 1 HETATM 4 C C4 PCW . . . E 3 150.352 138.607 131.222 1 88.02 ? C4 PCW 1003 A 1 HETATM 5 C C5 PCW . . . E 3 149.142 139.246 130.477 1 86.87 ? C5 PCW 1003 A 1 HETATM 6 C C6 PCW . . . E 3 147.884 139.29 128.418 1 81.27 ? C6 PCW 1003 A 1 HETATM 7 C C7 PCW . . . E 3 150.251 138.918 128.347 1 86.42 ? C7 PCW 1003 A 1 HETATM 8 C C8 PCW . . . E 3 148.787 137.215 129.212 1 80.22 ? C8 PCW 1003 A 1 HETATM 9 C C11 PCW . . . E 3 150.664 141.894 139.582 1 83.31 ? C11 PCW 1003 A 1 HETATM 10 C C12 PCW . . . E 3 152.129 142.178 139.989 1 80.82 ? C12 PCW 1003 A 1 HETATM 11 C C13 PCW . . . E 3 152.195 142.535 141.501 1 79.2 ? C13 PCW 1003 A 1 HETATM 12 C C14 PCW . . . E 3 152.944 143.879 141.687 1 72.49 ? C14 PCW 1003 A 1 HETATM 13 C C15 PCW . . . E 3 152.205 144.752 142.729 1 66.69 ? C15 PCW 1003 A 1 HETATM 14 C C16 PCW . . . E 3 152.308 144.109 144.131 1 65.44 ? C16 PCW 1003 A 1 HETATM 15 C C17 PCW . . . E 3 152.229 145.216 145.213 1 67.14 ? C17 PCW 1003 A 1 HETATM 16 C C18 PCW . . . E 3 151.443 144.687 146.437 1 63.73 ? C18 PCW 1003 A 1 HETATM 17 C C19 PCW . . . E 3 150.176 145.552 146.665 1 63.04 ? C19 PCW 1003 A 1 HETATM 18 C C20 PCW . . . E 3 150.111 146.045 147.906 1 66.66 ? C20 PCW 1003 A 1 HETATM 19 C C21 PCW . . . E 3 149.425 146.874 149.022 1 70.88 ? C21 PCW 1003 A 1 HETATM 20 C C22 PCW . . . E 3 149.931 146.405 150.412 1 62.09 ? C22 PCW 1003 A 1 HETATM 21 C C23 PCW . . . E 3 151.484 146.358 150.412 1 58.81 ? C23 PCW 1003 A 1 HETATM 22 C C24 PCW . . . E 3 152.027 146.414 151.864 1 60.92 ? C24 PCW 1003 A 1 HETATM 23 C C25 PCW . . . E 3 151.199 147.416 152.715 1 66.26 ? C25 PCW 1003 A 1 HETATM 24 C C26 PCW . . . E 3 152.131 148.542 153.242 1 69.2 ? C26 PCW 1003 A 1 HETATM 25 C C27 PCW . . . E 3 151.763 148.88 154.713 1 68.29 ? C27 PCW 1003 A 1 HETATM 26 C C28 PCW . . . E 3 153.055 149.168 155.517 1 57.2 ? C28 PCW 1003 A 1 HETATM 27 C C31 PCW . . . E 3 147.541 138.387 137.423 1 64.52 ? C31 PCW 1003 A 1 HETATM 28 C C32 PCW . . . E 3 146.171 139.036 137.762 1 53.62 ? C32 PCW 1003 A 1 HETATM 29 C C33 PCW . . . E 3 146.118 139.387 139.269 1 43.64 ? C33 PCW 1003 A 1 HETATM 30 C C34 PCW . . . E 3 144.751 140.039 139.608 1 38.86 ? C34 PCW 1003 A 1 HETATM 31 C C35 PCW . . . E 3 144.978 141.469 140.162 1 43.4 ? C35 PCW 1003 A 1 HETATM 32 C C36 PCW . . . E 3 143.707 141.942 140.917 1 39.22 ? C36 PCW 1003 A 1 HETATM 33 C C37 PCW . . . E 3 143.772 141.476 142.393 1 32.14 ? C37 PCW 1003 A 1 HETATM 34 C C38 PCW . . . E 3 143.897 142.71 143.325 1 29.16 ? C38 PCW 1003 A 1 HETATM 35 C C39 PCW . . . E 3 142.924 142.56 144.521 1 35.15 ? C39 PCW 1003 A 1 HETATM 36 C C40 PCW . . . E 3 143.275 143.001 145.742 1 41.45 ? C40 PCW 1003 A 1 HETATM 37 C C41 PCW . . . E 3 144.655 143.664 145.964 1 38.98 ? C41 PCW 1003 A 1 HETATM 38 C C42 PCW . . . E 3 144.657 144.441 147.313 1 44.35 ? C42 PCW 1003 A 1 HETATM 39 C C43 PCW . . . E 3 145.511 143.665 148.364 1 45.75 ? C43 PCW 1003 A 1 HETATM 40 C C44 PCW . . . E 3 144.725 143.56 149.701 1 48.32 ? C44 PCW 1003 A 1 HETATM 41 C C45 PCW . . . E 3 145.719 143.626 150.895 1 48 ? C45 PCW 1003 A 1 HETATM 42 C C46 PCW . . . E 3 146.148 142.188 151.289 1 57.06 ? C46 PCW 1003 A 1 HETATM 43 C C47 PCW . . . E 3 145.8 141.919 152.776 1 56.49 ? C47 PCW 1003 A 1 HETATM 44 C C48 PCW . . . E 3 145.509 140.415 152.976 1 36.45 ? C48 PCW 1003 A 1 HETATM 45 N N PCW . . . E 3 149.017 138.663 129.111 1 86.58 ? N PCW 1003 A 1 HETATM 46 O O2 PCW . . . E 3 148.548 139.148 136.767 1 77.7 ? O2 PCW 1003 A 1 HETATM 47 O O3 PCW . . . E 3 150.289 140.599 139.133 1 77.24 ? O3 PCW 1003 A 1 HETATM 48 O O11 PCW . . . E 3 149.853 142.754 139.643 1 79.15 ? O11 PCW 1003 A 1 HETATM 49 O O31 PCW . . . E 3 147.749 137.253 137.713 1 57.33 ? O31 PCW 1003 A 1 HETATM 50 O O1P PCW . . . E 3 151.446 136.794 134.061 1 92.17 ? O1P PCW 1003 A 1 HETATM 51 O O2P PCW . . . E 3 152.434 138.879 133.189 1 86.26 ? O2P PCW 1003 A 1 HETATM 52 O O3P PCW . . . E 3 150.666 139.05 135.084 1 75.73 ? O3P PCW 1003 A 1 HETATM 53 O O4P PCW . . . E 3 149.981 138.317 132.562 1 88.03 ? O4P PCW 1003 A 1 HETATM 54 P P PCW . . . E 3 151.172 138.24 133.719 1 99.82 ? P PCW 1003 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 106 _model_server_stats.query_time_ms 567 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 54 #