data_8URT # _model_server_result.job_id erJr2hCsRr9m-fBn2YvGbA _model_server_result.datetime_utc '2024-11-30 23:57:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8urt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":401}' # _entry.id 8URT # _exptl.entry_id 8URT _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 787.121 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8URT _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8URT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 1 1_555 A N GLY 2 A GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 B C ACE 1 B ACE 1 1_555 B N GLY 2 B GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A OD1 ASP 96 A ASP 96 1_555 C MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc2 A OD1 ASP 96 A ASP 96 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc3 A OD2 ASP 96 A ASP 96 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc4 A OD2 ASP 117 A ASP 117 1_555 C MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc5 A OD1 ASP 121 A ASP 121 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc6 B OH TYR 92 B TYR 92 1_555 L MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc7 B O ASP 96 B ASP 96 1_555 K MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? metalc ? metalc8 B OD1 ASP 96 B ASP 96 1_555 K MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? metalc ? metalc9 B OD1 ASP 99 B ASP 99 1_555 K MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc10 B OD2 ASP 99 B ASP 99 1_555 K MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc11 B OD2 ASP 117 B ASP 117 1_555 K MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C44 H85 N O8 P 1' _chem_comp.formula_weight 787.121 _chem_comp.id PCW _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (Z,Z)-4-HYDROXY-N,N,N-TRIMETHYL-10-OXO-7-[(1-OXO-9-OCTADECENYL)OXY]-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-18-EN-1-AMINIUM-4-OXIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PCW sing 291 n n C1 O3P PCW sing 292 n n C1 H11 PCW sing 293 n n C1 H12 PCW sing 294 n n C2 C3 PCW sing 295 n n C2 O2 PCW sing 296 n n C2 H2 PCW sing 297 n n C3 O3 PCW sing 298 n n C3 H31 PCW sing 299 n n C3 H32 PCW sing 300 n n C4 C5 PCW sing 301 n n C4 O4P PCW sing 302 n n C4 H41 PCW sing 303 n n C4 H42 PCW sing 304 n n C5 N PCW sing 305 n n C5 H51 PCW sing 306 n n C5 H52 PCW sing 307 n n C6 N PCW sing 308 n n C6 H61 PCW sing 309 n n C6 H62 PCW sing 310 n n C6 H63 PCW sing 311 n n C7 N PCW sing 312 n n C7 H71 PCW sing 313 n n C7 H72 PCW sing 314 n n C7 H73 PCW sing 315 n n C8 N PCW sing 316 n n C8 H81 PCW sing 317 n n C8 H82 PCW sing 318 n n C8 H83 PCW sing 319 n n C11 C12 PCW sing 320 n n C11 O3 PCW sing 321 n n C11 O11 PCW doub 322 n n C12 C13 PCW sing 323 n n C12 H121 PCW sing 324 n n C12 H122 PCW sing 325 n n C13 C14 PCW sing 326 n n C13 H131 PCW sing 327 n n C13 H132 PCW sing 328 n n C14 C15 PCW sing 329 n n C14 H141 PCW sing 330 n n C14 H142 PCW sing 331 n n C15 C16 PCW sing 332 n n C15 H151 PCW sing 333 n n C15 H152 PCW sing 334 n n C16 C17 PCW sing 335 n n C16 H161 PCW sing 336 n n C16 H162 PCW sing 337 n n C17 C18 PCW sing 338 n n C17 H171 PCW sing 339 n n C17 H172 PCW sing 340 n n C18 C19 PCW sing 341 n n C18 H181 PCW sing 342 n n C18 H182 PCW sing 343 n n C19 C20 PCW doub 344 z n C19 H19 PCW sing 345 n n C20 C21 PCW sing 346 n n C20 H20 PCW sing 347 n n C21 C22 PCW sing 348 n n C21 H211 PCW sing 349 n n C21 H212 PCW sing 350 n n C22 C23 PCW sing 351 n n C22 H221 PCW sing 352 n n C22 H222 PCW sing 353 n n C23 C24 PCW sing 354 n n C23 H231 PCW sing 355 n n C23 H232 PCW sing 356 n n C24 C25 PCW sing 357 n n C24 H241 PCW sing 358 n n C24 H242 PCW sing 359 n n C25 C26 PCW sing 360 n n C25 H251 PCW sing 361 n n C25 H252 PCW sing 362 n n C26 C27 PCW sing 363 n n C26 H261 PCW sing 364 n n C26 H262 PCW sing 365 n n C27 C28 PCW sing 366 n n C27 H271 PCW sing 367 n n C27 H272 PCW sing 368 n n C28 H281 PCW sing 369 n n C28 H282 PCW sing 370 n n C28 H283 PCW sing 371 n n C31 C32 PCW sing 372 n n C31 O2 PCW sing 373 n n C31 O31 PCW doub 374 n n C32 C33 PCW sing 375 n n C32 H321 PCW sing 376 n n C32 H322 PCW sing 377 n n C33 C34 PCW sing 378 n n C33 H331 PCW sing 379 n n C33 H332 PCW sing 380 n n C34 C35 PCW sing 381 n n C34 H341 PCW sing 382 n n C34 H342 PCW sing 383 n n C35 C36 PCW sing 384 n n C35 H351 PCW sing 385 n n C35 H352 PCW sing 386 n n C36 C37 PCW sing 387 n n C36 H361 PCW sing 388 n n C36 H362 PCW sing 389 n n C37 C38 PCW sing 390 n n C37 H371 PCW sing 391 n n C37 H372 PCW sing 392 n n C38 C39 PCW sing 393 n n C38 H381 PCW sing 394 n n C38 H382 PCW sing 395 n n C39 C40 PCW doub 396 z n C39 H39 PCW sing 397 n n C40 C41 PCW sing 398 n n C40 H40 PCW sing 399 n n C41 C42 PCW sing 400 n n C41 H411 PCW sing 401 n n C41 H412 PCW sing 402 n n C42 C43 PCW sing 403 n n C42 H421 PCW sing 404 n n C42 H422 PCW sing 405 n n C43 C44 PCW sing 406 n n C43 H431 PCW sing 407 n n C43 H432 PCW sing 408 n n C44 C45 PCW sing 409 n n C44 H441 PCW sing 410 n n C44 H442 PCW sing 411 n n C45 C46 PCW sing 412 n n C45 H451 PCW sing 413 n n C45 H452 PCW sing 414 n n C46 C47 PCW sing 415 n n C46 H461 PCW sing 416 n n C46 H462 PCW sing 417 n n C47 C48 PCW sing 418 n n C47 H471 PCW sing 419 n n C47 H472 PCW sing 420 n n C48 H481 PCW sing 421 n n C48 H482 PCW sing 422 n n C48 H483 PCW sing 423 n n O1P P PCW sing 424 n n O1P H1P PCW sing 425 n n O2P P PCW doub 426 n n O3P P PCW sing 427 n n O4P P PCW sing 428 n n # _atom_sites.entry_id 8URT _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 1001 1001 MG MG . D 2 MG A 1 1002 1002 MG MG . E 3 PCW A 1 1003 1005 PCW PCW . F 3 PCW A 1 1004 1006 PCW PCW . G 4 CTI A 1 1005 1009 CTI CTI . H 3 PCW A 1 1006 1006 PCW PCW . I 3 PCW A 1 1007 1007 PCW PCW . J 3 PCW B 1 401 1007 PCW PCW . K 2 MG B 1 402 1001 MG MG . L 2 MG B 1 403 1002 MG MG . M 3 PCW B 1 404 1005 PCW PCW . N 4 CTI B 1 405 1009 CTI CTI . O 5 HOH A 1 1101 1008 HOH HOH . P 5 HOH B 1 501 1008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PCW . . . J 3 147.9 149.123 133.683 1 91.48 ? C1 PCW 401 B 1 HETATM 2 C C2 PCW . . . J 3 146.869 149.389 134.79 1 91.78 ? C2 PCW 401 B 1 HETATM 3 C C3 PCW . . . J 3 146.93 148.258 135.816 1 89.25 ? C3 PCW 401 B 1 HETATM 4 C C4 PCW . . . J 3 148.4 149.747 129.566 1 98.12 ? C4 PCW 401 B 1 HETATM 5 C C5 PCW . . . J 3 147.835 148.305 129.737 1 98.31 ? C5 PCW 401 B 1 HETATM 6 C C6 PCW . . . J 3 149.936 147.374 128.969 1 110.55 ? C6 PCW 401 B 1 HETATM 7 C C7 PCW . . . J 3 148.182 147.821 127.386 1 91.82 ? C7 PCW 401 B 1 HETATM 8 C C8 PCW . . . J 3 147.957 146.022 128.959 1 102.4 ? C8 PCW 401 B 1 HETATM 9 C C11 PCW . . . J 3 145.416 146.826 136.973 1 76.83 ? C11 PCW 401 B 1 HETATM 10 C C12 PCW . . . J 3 144.117 147.172 137.733 1 66.04 ? C12 PCW 401 B 1 HETATM 11 C C13 PCW . . . J 3 144.476 147.911 139.051 1 65.58 ? C13 PCW 401 B 1 HETATM 12 C C14 PCW . . . J 3 144.548 146.893 140.215 1 60.34 ? C14 PCW 401 B 1 HETATM 13 C C15 PCW . . . J 3 143.208 146.901 140.983 1 56.88 ? C15 PCW 401 B 1 HETATM 14 C C16 PCW . . . J 3 143.201 148.076 141.987 1 65.17 ? C16 PCW 401 B 1 HETATM 15 C C17 PCW . . . J 3 142.119 147.823 143.065 1 68.09 ? C17 PCW 401 B 1 HETATM 16 C C18 PCW . . . J 3 140.736 147.743 142.378 1 60.12 ? C18 PCW 401 B 1 HETATM 17 C C19 PCW . . . J 3 139.723 148.655 143.114 1 59.62 ? C19 PCW 401 B 1 HETATM 18 C C20 PCW . . . J 3 139.951 149.951 142.889 1 67.26 ? C20 PCW 401 B 1 HETATM 19 C C21 PCW . . . J 3 140.743 151.119 142.252 1 68.73 ? C21 PCW 401 B 1 HETATM 20 C C22 PCW . . . J 3 139.791 152.011 141.413 1 68.93 ? C22 PCW 401 B 1 HETATM 21 C C23 PCW . . . J 3 140.071 151.78 139.904 1 65.89 ? C23 PCW 401 B 1 HETATM 22 C C24 PCW . . . J 3 140.936 152.945 139.363 1 69.06 ? C24 PCW 401 B 1 HETATM 23 C C25 PCW . . . J 3 140.434 153.363 137.954 1 65.48 ? C25 PCW 401 B 1 HETATM 24 C C26 PCW . . . J 3 140.192 152.101 137.082 1 60.63 ? C26 PCW 401 B 1 HETATM 25 C C27 PCW . . . J 3 139.485 152.519 135.765 1 66.13 ? C27 PCW 401 B 1 HETATM 26 C C28 PCW . . . J 3 138.971 151.265 135.019 1 58.29 ? C28 PCW 401 B 1 HETATM 27 C C31 PCW . . . J 3 146.101 151.071 136.275 1 89.72 ? C31 PCW 401 B 1 HETATM 28 C C32 PCW . . . J 3 146.379 151.352 137.777 1 86.41 ? C32 PCW 401 B 1 HETATM 29 C C33 PCW . . . J 3 145.33 152.353 138.32 1 80.66 ? C33 PCW 401 B 1 HETATM 30 C C34 PCW . . . J 3 144.341 151.621 139.265 1 78.74 ? C34 PCW 401 B 1 HETATM 31 C C35 PCW . . . J 3 145.054 151.268 140.595 1 75.93 ? C35 PCW 401 B 1 HETATM 32 C C36 PCW . . . J 3 145.131 152.531 141.494 1 77.04 ? C36 PCW 401 B 1 HETATM 33 C C37 PCW . . . J 3 144.083 152.434 142.632 1 74.69 ? C37 PCW 401 B 1 HETATM 34 C C38 PCW . . . J 3 144.811 152.427 144.002 1 74.43 ? C38 PCW 401 B 1 HETATM 35 C C39 PCW . . . J 3 143.806 152.765 145.134 1 75.88 ? C39 PCW 401 B 1 HETATM 36 C C40 PCW . . . J 3 142.824 151.905 145.454 1 77.97 ? C40 PCW 401 B 1 HETATM 37 C C41 PCW . . . J 3 141.831 152.26 146.587 1 68.33 ? C41 PCW 401 B 1 HETATM 38 C C42 PCW . . . J 3 142.628 152.733 147.838 1 74.44 ? C42 PCW 401 B 1 HETATM 39 C C43 PCW . . . J 3 141.894 152.287 149.14 1 72.6 ? C43 PCW 401 B 1 HETATM 40 C C44 PCW . . . J 3 142.928 152.143 150.294 1 72.22 ? C44 PCW 401 B 1 HETATM 41 C C45 PCW . . . J 3 142.808 153.358 151.258 1 63.75 ? C45 PCW 401 B 1 HETATM 42 C C46 PCW . . . J 3 143.093 152.908 152.715 1 56.75 ? C46 PCW 401 B 1 HETATM 43 C C47 PCW . . . J 3 141.788 152.377 153.36 1 57.2 ? C47 PCW 401 B 1 HETATM 44 C C48 PCW . . . J 3 142.132 151.296 154.408 1 58.03 ? C48 PCW 401 B 1 HETATM 45 N N PCW . . . J 3 148.482 147.381 128.76 1 106.94 ? N PCW 401 B 1 HETATM 46 O O2 PCW . . . J 3 147.147 150.614 135.426 1 96.65 ? O2 PCW 401 B 1 HETATM 47 O O3 PCW . . . J 3 145.729 147.492 135.759 1 84.46 ? O3 PCW 401 B 1 HETATM 48 O O11 PCW . . . J 3 146.152 146.006 137.403 1 80.42 ? O11 PCW 401 B 1 HETATM 49 O O31 PCW . . . J 3 145.009 151.24 135.833 1 84.76 ? O31 PCW 401 B 1 HETATM 50 O O1P PCW . . . J 3 150.139 151.765 131.885 1 96.38 ? O1P PCW 401 B 1 HETATM 51 O O2P PCW . . . J 3 150.308 149.313 131.681 1 112.85 ? O2P PCW 401 B 1 HETATM 52 O O3P PCW . . . J 3 148.66 150.293 133.431 1 104.31 ? O3P PCW 401 B 1 HETATM 53 O O4P PCW . . . J 3 148.187 150.485 130.761 1 99.71 ? O4P PCW 401 B 1 HETATM 54 P P PCW . . . J 3 149.366 150.467 131.933 1 114.96 ? P PCW 401 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 54 #