data_8URT # _model_server_result.job_id oMmSVUWEz0A88jiafulReA _model_server_result.datetime_utc '2024-12-06 11:42:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8urt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":405}' # _entry.id 8URT # _exptl.entry_id 8URT _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 348.372 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dimethoxy-12-methyl[1,3]benzodioxolo[5,6-c]phenanthridin-12-ium _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8URT _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8URT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 1 1_555 A N GLY 2 A GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 B C ACE 1 B ACE 1 1_555 B N GLY 2 B GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A OD1 ASP 96 A ASP 96 1_555 C MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc2 A OD1 ASP 96 A ASP 96 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc3 A OD2 ASP 96 A ASP 96 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc4 A OD2 ASP 117 A ASP 117 1_555 C MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc5 A OD1 ASP 121 A ASP 121 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc6 B OH TYR 92 B TYR 92 1_555 L MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc7 B O ASP 96 B ASP 96 1_555 K MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? metalc ? metalc8 B OD1 ASP 96 B ASP 96 1_555 K MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? metalc ? metalc9 B OD1 ASP 99 B ASP 99 1_555 K MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc10 B OD2 ASP 99 B ASP 99 1_555 K MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc11 B OD2 ASP 117 B ASP 117 1_555 K MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C21 H18 N O4 1' _chem_comp.formula_weight 348.372 _chem_comp.id CTI _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-dimethoxy-12-methyl[1,3]benzodioxolo[5,6-c]phenanthridin-12-ium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms chelerythrine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CTI doub 76 n y C1 C22 CTI sing 77 n y C2 C3 CTI sing 78 n y C2 C5 CTI sing 79 n y C3 C4 CTI doub 80 n y C3 C8 CTI sing 81 n y C4 C23 CTI sing 82 n y C5 C6 CTI doub 83 n y C5 N9 CTI sing 84 n y C6 C7 CTI sing 85 n y C6 C10 CTI sing 86 n y C7 C8 CTI doub 87 n y N9 C12 CTI doub 88 n y N9 C13 CTI sing 89 n n C10 C11 CTI doub 90 n y C10 C16 CTI sing 91 n y C11 C12 CTI sing 92 n y C11 C17 CTI sing 93 n y C14 C15 CTI sing 94 n y C14 C17 CTI doub 95 n y C14 O20 CTI sing 96 n n C15 C16 CTI doub 97 n y C17 O18 CTI sing 98 n n O18 C19 CTI sing 99 n n O20 C21 CTI sing 100 n n C22 C23 CTI doub 101 n y C22 O24 CTI sing 102 n n C23 O26 CTI sing 103 n n O24 C25 CTI sing 104 n n C25 O26 CTI sing 105 n n C1 H1 CTI sing 106 n n C4 H4 CTI sing 107 n n C7 H7 CTI sing 108 n n C8 H8 CTI sing 109 n n C12 H12 CTI sing 110 n n C13 H13 CTI sing 111 n n C13 H13A CTI sing 112 n n C13 H13B CTI sing 113 n n C15 H15 CTI sing 114 n n C16 H16 CTI sing 115 n n C19 H19 CTI sing 116 n n C19 H19A CTI sing 117 n n C19 H19B CTI sing 118 n n C21 H21 CTI sing 119 n n C21 H21A CTI sing 120 n n C21 H21B CTI sing 121 n n C25 H25 CTI sing 122 n n C25 H25A CTI sing 123 n n # _atom_sites.entry_id 8URT _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 1001 1001 MG MG . D 2 MG A 1 1002 1002 MG MG . E 3 PCW A 1 1003 1005 PCW PCW . F 3 PCW A 1 1004 1006 PCW PCW . G 4 CTI A 1 1005 1009 CTI CTI . H 3 PCW A 1 1006 1006 PCW PCW . I 3 PCW A 1 1007 1007 PCW PCW . J 3 PCW B 1 401 1007 PCW PCW . K 2 MG B 1 402 1001 MG MG . L 2 MG B 1 403 1002 MG MG . M 3 PCW B 1 404 1005 PCW PCW . N 4 CTI B 1 405 1009 CTI CTI . O 5 HOH A 1 1101 1008 HOH HOH . P 5 HOH B 1 501 1008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CTI . . . N 4 127.72 165.889 152.505 1 68.11 ? C1 CTI 405 B 1 HETATM 2 C C2 CTI . . . N 4 127.249 166.223 151.218 1 71.19 ? C2 CTI 405 B 1 HETATM 3 C C3 CTI . . . N 4 127.54 165.344 150.188 1 70.83 ? C3 CTI 405 B 1 HETATM 4 C C4 CTI . . . N 4 128.274 164.169 150.419 1 64.29 ? C4 CTI 405 B 1 HETATM 5 C C5 CTI . . . N 4 126.489 167.426 150.944 1 73.05 ? C5 CTI 405 B 1 HETATM 6 C C6 CTI . . . N 4 126.077 167.65 149.636 1 72.43 ? C6 CTI 405 B 1 HETATM 7 C C7 CTI . . . N 4 126.384 166.742 148.602 1 67.09 ? C7 CTI 405 B 1 HETATM 8 C C8 CTI . . . N 4 127.109 165.598 148.872 1 67.43 ? C8 CTI 405 B 1 HETATM 9 N N9 CTI . . . N 4 126.136 168.387 151.905 1 76.08 ? N9 CTI 405 B 1 HETATM 10 C C10 CTI . . . N 4 125.342 168.784 149.288 1 73.85 ? C10 CTI 405 B 1 HETATM 11 C C11 CTI . . . N 4 125.015 169.693 150.228 1 77.65 ? C11 CTI 405 B 1 HETATM 12 C C12 CTI . . . N 4 125.419 169.489 151.557 1 78.35 ? C12 CTI 405 B 1 HETATM 13 C C13 CTI . . . N 4 126.32 168.609 153.336 1 72.85 ? C13 CTI 405 B 1 HETATM 14 C C14 CTI . . . N 4 123.88 171.028 148.559 1 81.56 ? C14 CTI 405 B 1 HETATM 15 C C15 CTI . . . N 4 124.213 170.1 147.594 1 77.87 ? C15 CTI 405 B 1 HETATM 16 C C16 CTI . . . N 4 124.941 168.978 147.947 1 70.74 ? C16 CTI 405 B 1 HETATM 17 C C17 CTI . . . N 4 124.273 170.835 149.87 1 77.32 ? C17 CTI 405 B 1 HETATM 18 O O18 CTI . . . N 4 123.737 171.979 150.469 1 79.48 ? O18 CTI 405 B 1 HETATM 19 C C19 CTI . . . N 4 122.486 171.772 151.062 1 79.69 ? C19 CTI 405 B 1 HETATM 20 O O20 CTI . . . N 4 123.174 171.953 147.781 1 87.75 ? O20 CTI 405 B 1 HETATM 21 C C21 CTI . . . N 4 123.928 173.079 147.424 1 82.56 ? C21 CTI 405 B 1 HETATM 22 C C22 CTI . . . N 4 128.455 164.714 152.744 1 70.37 ? C22 CTI 405 B 1 HETATM 23 C C23 CTI . . . N 4 128.731 163.859 151.707 1 68.33 ? C23 CTI 405 B 1 HETATM 24 O O24 CTI . . . N 4 129.025 164.169 153.917 1 68.32 ? O24 CTI 405 B 1 HETATM 25 C C25 CTI . . . N 4 129.817 163.066 153.543 1 64.66 ? C25 CTI 405 B 1 HETATM 26 O O26 CTI . . . N 4 129.476 162.773 152.213 1 63.2 ? O26 CTI 405 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #