data_8USB # _model_server_result.job_id R0_hqvKLTuZlgEK-l4GkUQ _model_server_result.datetime_utc '2024-11-07 03:24:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8usb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"LA","auth_seq_id":501}' # _entry.id 8USB # _exptl.entry_id 8USB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 30 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8USB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8USB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 27-meric _pdbx_struct_assembly.oligomeric_count 27 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 30 DA N N ? 30 FA N N ? 30 HA N N ? 30 JA N N ? 30 LA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 L SG CYS 115 G CYS 115 1_555 L SG CYS 154 G CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc1 BA O2B ADP . C ADP 501 1_555 CA MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc2 BA O3B ADP . C ADP 501 1_555 CA MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc3 G OG1 THR 233 B THR 233 1_555 EA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc4 DA O1G ATP . B ATP 501 1_555 EA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc5 H OG1 THR 223 A THR 223 1_555 GA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc6 FA O3G ATP . A ATP 501 1_555 GA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc7 FA O2B ATP . A ATP 501 1_555 GA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc8 I OG1 THR 213 D THR 213 1_555 IA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc9 HA O3G ATP . D ATP 501 1_555 IA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc10 HA O2B ATP . D ATP 501 1_555 IA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc11 J OG1 THR 181 E THR 181 1_555 KA MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc12 JA O2G ATP . E ATP 501 1_555 KA MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc13 JA O2B ATP . E ATP 501 1_555 KA MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc14 K OG1 THR 234 F THR 234 1_555 MA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc15 LA O3G ATP . F ATP 501 1_555 MA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc16 LA O2B ATP . F ATP 501 1_555 MA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc17 V OE1 GLU 52 c GLU 52 1_555 NA ZN ZN . c ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc18 V NE2 HIS 113 c HIS 113 1_555 NA ZN ZN . c ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc19 V NE2 HIS 115 c HIS 115 1_555 NA ZN ZN . c ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc20 V OD2 ASP 126 c ASP 126 1_555 NA ZN ZN . c ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 8USB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code BA 28 ADP C 1 501 501 ADP ADP . CA 29 MG C 1 502 502 MG MG . DA 30 ATP B 1 501 501 ATP ATP . EA 29 MG B 1 502 502 MG MG . FA 30 ATP A 1 501 501 ATP ATP . GA 29 MG A 1 502 502 MG MG . HA 30 ATP D 1 501 501 ATP ATP . IA 29 MG D 1 502 502 MG MG . JA 30 ATP E 1 501 501 ATP ATP . KA 29 MG E 1 502 502 MG MG . LA 30 ATP F 1 501 501 ATP ATP . MA 29 MG F 1 502 502 MG MG . NA 31 ZN c 1 501 401 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . LA 30 183.438 128.625 138.37 1 117.05 ? PG ATP 501 F 1 HETATM 2 O O1G ATP . . . LA 30 183.361 128.364 139.834 1 92.43 ? O1G ATP 501 F 1 HETATM 3 O O2G ATP . . . LA 30 182.416 127.841 137.549 1 103.74 ? O2G ATP 501 F 1 HETATM 4 O O3G ATP . . . LA 30 183.337 130.108 138.001 1 108.46 ? O3G ATP 501 F 1 HETATM 5 P PB ATP . . . LA 30 185.553 127.873 136.402 1 83.68 ? PB ATP 501 F 1 HETATM 6 O O1B ATP . . . LA 30 185.161 126.562 135.856 1 87.51 ? O1B ATP 501 F 1 HETATM 7 O O2B ATP . . . LA 30 185.281 129.08 135.509 1 96.21 ? O2B ATP 501 F 1 HETATM 8 O O3B ATP . . . LA 30 184.853 128.166 137.791 1 93.81 ? O3B ATP 501 F 1 HETATM 9 P PA ATP . . . LA 30 188.324 128.884 136.524 1 98.04 ? PA ATP 501 F 1 HETATM 10 O O1A ATP . . . LA 30 188.602 128.99 135.078 1 92.47 ? O1A ATP 501 F 1 HETATM 11 O O2A ATP . . . LA 30 188.032 130.206 137.228 1 97.7 ? O2A ATP 501 F 1 HETATM 12 O O3A ATP . . . LA 30 187.093 127.923 136.798 1 80 ? O3A ATP 501 F 1 HETATM 13 O O5' ATP . . . LA 30 189.519 128.168 137.269 1 84.4 ? O5' ATP 501 F 1 HETATM 14 C C5' ATP . . . LA 30 190.155 128.768 138.417 1 87.29 ? C5' ATP 501 F 1 HETATM 15 C C4' ATP . . . LA 30 191.544 128.194 138.525 1 84.54 ? C4' ATP 501 F 1 HETATM 16 O O4' ATP . . . LA 30 191.53 126.83 138.056 1 80.65 ? O4' ATP 501 F 1 HETATM 17 C C3' ATP . . . LA 30 192.606 128.939 137.715 1 88.02 ? C3' ATP 501 F 1 HETATM 18 O O3' ATP . . . LA 30 193.739 129.27 138.509 1 102.87 ? O3' ATP 501 F 1 HETATM 19 C C2' ATP . . . LA 30 192.948 127.975 136.572 1 84.09 ? C2' ATP 501 F 1 HETATM 20 O O2' ATP . . . LA 30 194.334 128.021 136.257 1 94.32 ? O2' ATP 501 F 1 HETATM 21 C C1' ATP . . . LA 30 192.6 126.612 137.166 1 77.12 ? C1' ATP 501 F 1 HETATM 22 N N9 ATP . . . LA 30 192.161 125.643 136.171 1 75.99 ? N9 ATP 501 F 1 HETATM 23 C C8 ATP . . . LA 30 190.917 125.08 136.063 1 80.02 ? C8 ATP 501 F 1 HETATM 24 N N7 ATP . . . LA 30 190.793 124.24 135.064 1 81.09 ? N7 ATP 501 F 1 HETATM 25 C C5 ATP . . . LA 30 192.044 124.258 134.466 1 80.02 ? C5 ATP 501 F 1 HETATM 26 C C6 ATP . . . LA 30 192.571 123.584 133.348 1 84.09 ? C6 ATP 501 F 1 HETATM 27 N N6 ATP . . . LA 30 191.874 122.721 132.602 1 80.79 ? N6 ATP 501 F 1 HETATM 28 N N1 ATP . . . LA 30 193.859 123.825 133.019 1 82.92 ? N1 ATP 501 F 1 HETATM 29 C C2 ATP . . . LA 30 194.562 124.685 133.761 1 79.65 ? C2 ATP 501 F 1 HETATM 30 N N3 ATP . . . LA 30 194.172 125.378 134.832 1 77.85 ? N3 ATP 501 F 1 HETATM 31 C C4 ATP . . . LA 30 192.897 125.118 135.137 1 78.48 ? C4 ATP 501 F 1 # _model_server_stats.io_time_ms 83 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 73 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 31 #