data_8USC # _model_server_result.job_id ZqLImvYZ9liK6xwwZPROEg _model_server_result.datetime_utc '2024-11-07 05:47:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8usc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EA","auth_seq_id":502}' # _entry.id 8USC # _exptl.entry_id 8USC _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 30 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8USC _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8USC _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 28-meric _pdbx_struct_assembly.oligomeric_count 28 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 30 DA N N ? 30 EA N N ? 30 LA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 137 H CYS 137 1_555 A SG CYS 213 H CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 E SG CYS 633 U CYS 633 1_555 E SG CYS 659 U CYS 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 P SG CYS 115 G CYS 115 1_555 P SG CYS 154 G CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 U SG CYS 42 M CYS 41 1_555 U SG CYS 187 M CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 I OG1 THR 223 A THR 223 1_555 CA MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc2 CA MG MG . A MG 501 1_555 DA O2G ATP . B ATP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc3 CA MG MG . A MG 501 1_555 DA O1B ATP . B ATP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc4 CA MG MG . A MG 501 1_555 DA O3B ATP . B ATP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.841 ? metalc ? metalc5 CA MG MG . A MG 501 1_555 DA O3A ATP . B ATP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.932 ? metalc ? metalc6 J OG1 THR 233 B THR 233 1_555 FA MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc7 EA O2G ATP . B ATP 502 1_555 FA MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc8 EA O2B ATP . B ATP 502 1_555 FA MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc9 EA O3B ATP . B ATP 502 1_555 FA MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? metalc ? metalc10 GA MG MG . C MG 501 1_555 HA O1B ADP . C ADP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc11 GA MG MG . C MG 501 1_555 HA O2B ADP . C ADP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc12 GA MG MG . C MG 501 1_555 HA O2A ADP . C ADP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc13 L OG1 THR 213 D THR 213 1_555 JA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc14 IA O1B ADP . D ADP 501 1_555 JA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc15 IA O3B ADP . D ADP 501 1_555 JA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc16 IA O1A ADP . D ADP 501 1_555 JA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc17 N OG1 THR 234 F THR 234 1_555 MA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc18 LA O3G ATP . F ATP 501 1_555 MA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc19 LA O2B ATP . F ATP 501 1_555 MA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc20 LA O3B ATP . F ATP 501 1_555 MA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc21 LA O2A ATP . F ATP 501 1_555 MA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc22 LA O3A ATP . F ATP 501 1_555 MA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? metalc ? metalc23 BA NE2 HIS 113 c HIS 113 1_555 NA ZN ZN . c ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc24 BA NE2 HIS 115 c HIS 115 1_555 NA ZN ZN . c ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc25 BA OD1 ASP 126 c ASP 126 1_555 NA ZN ZN . c ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc26 BA OD2 ASP 126 c ASP 126 1_555 NA ZN ZN . c ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 8USC _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code CA 29 MG A 1 501 502 MG MG . DA 30 ATP B 1 501 501 ATP ATP . EA 30 ATP B 1 502 501 ATP ATP . FA 29 MG B 1 503 502 MG MG . GA 29 MG C 1 501 502 MG MG . HA 31 ADP C 1 502 503 ADP ADP . IA 31 ADP D 1 501 501 ADP ADP . JA 29 MG D 1 502 502 MG MG . KA 31 ADP E 1 401 401 ADP ADP . LA 30 ATP F 1 501 501 ATP ATP . MA 29 MG F 1 502 502 MG MG . NA 32 ZN c 1 501 401 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . EA 30 160.236 139.503 180.361 1 73.18 ? PG ATP 502 B 1 HETATM 2 O O1G ATP . . . EA 30 160.442 138.165 179.74 1 73.18 ? O1G ATP 502 B 1 HETATM 3 O O2G ATP . . . EA 30 161.346 140.505 180.032 1 73.18 ? O2G ATP 502 B 1 HETATM 4 O O3G ATP . . . EA 30 158.882 140.13 180.03 1 73.18 ? O3G ATP 502 B 1 HETATM 5 P PB ATP . . . EA 30 161.174 139.775 183.195 1 73.18 ? PB ATP 502 B 1 HETATM 6 O O1B ATP . . . EA 30 161.571 138.589 183.978 1 73.18 ? O1B ATP 502 B 1 HETATM 7 O O2B ATP . . . EA 30 162.325 140.619 182.656 1 73.18 ? O2B ATP 502 B 1 HETATM 8 O O3B ATP . . . EA 30 160.249 139.396 181.958 1 73.18 ? O3B ATP 502 B 1 HETATM 9 P PA ATP . . . EA 30 160.404 141.801 185.206 1 73.18 ? PA ATP 502 B 1 HETATM 10 O O1A ATP . . . EA 30 160.342 143.188 184.705 1 73.18 ? O1A ATP 502 B 1 HETATM 11 O O2A ATP . . . EA 30 161.702 141.45 185.927 1 73.18 ? O2A ATP 502 B 1 HETATM 12 O O3A ATP . . . EA 30 160.229 140.746 184.03 1 73.18 ? O3A ATP 502 B 1 HETATM 13 O O5' ATP . . . EA 30 159.197 141.482 186.171 1 73.18 ? O5' ATP 502 B 1 HETATM 14 C C5' ATP . . . EA 30 158.132 142.434 186.378 1 73.18 ? C5' ATP 502 B 1 HETATM 15 C C4' ATP . . . EA 30 157.988 142.695 187.855 1 73.18 ? C4' ATP 502 B 1 HETATM 16 O O4' ATP . . . EA 30 157.876 141.44 188.55 1 73.18 ? O4' ATP 502 B 1 HETATM 17 C C3' ATP . . . EA 30 159.179 143.39 188.499 1 73.18 ? C3' ATP 502 B 1 HETATM 18 O O3' ATP . . . EA 30 159.049 144.803 188.395 1 73.18 ? O3' ATP 502 B 1 HETATM 19 C C2' ATP . . . EA 30 159.096 142.93 189.958 1 73.18 ? C2' ATP 502 B 1 HETATM 20 O O2' ATP . . . EA 30 158.376 143.848 190.774 1 73.18 ? O2' ATP 502 B 1 HETATM 21 C C1' ATP . . . EA 30 158.367 141.581 189.869 1 73.18 ? C1' ATP 502 B 1 HETATM 22 N N9 ATP . . . EA 30 159.222 140.436 190.153 1 73.18 ? N9 ATP 502 B 1 HETATM 23 C C8 ATP . . . EA 30 159.512 139.396 189.309 1 73.18 ? C8 ATP 502 B 1 HETATM 24 N N7 ATP . . . EA 30 160.321 138.501 189.821 1 73.18 ? N7 ATP 502 B 1 HETATM 25 C C5 ATP . . . EA 30 160.589 138.99 191.09 1 73.18 ? C5 ATP 502 B 1 HETATM 26 C C6 ATP . . . EA 30 161.386 138.508 192.144 1 73.18 ? C6 ATP 502 B 1 HETATM 27 N N6 ATP . . . EA 30 162.089 137.373 192.087 1 73.18 ? N6 ATP 502 B 1 HETATM 28 N N1 ATP . . . EA 30 161.437 139.24 193.279 1 73.18 ? N1 ATP 502 B 1 HETATM 29 C C2 ATP . . . EA 30 160.734 140.372 193.346 1 73.18 ? C2 ATP 502 B 1 HETATM 30 N N3 ATP . . . EA 30 159.951 140.926 192.419 1 73.18 ? N3 ATP 502 B 1 HETATM 31 C C4 ATP . . . EA 30 159.918 140.182 191.309 1 73.18 ? C4 ATP 502 B 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 287 _model_server_stats.query_time_ms 516 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 31 #