data_8USM # _model_server_result.job_id MiTVJpr1UPqttcmUQ4cAKA _model_server_result.datetime_utc '2025-10-01 07:51:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8usm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 8USM # _exptl.entry_id 8USM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 459.388 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4'-fluoro-6-(trifluoromethyl)[1,1'-biphenyl]-2-yl 2-acetamido-2-deoxy-beta-D-galactopyranoside" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8USM _cell.length_a 51.245 _cell.length_b 116.45 _cell.length_c 50.955 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8USM _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 42 A CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 B SG CYS 3 B CYS 3 1_555 B SG CYS 42 B CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C21 H21 F4 N O6' _chem_comp.formula_weight 459.388 _chem_comp.id XC8 _chem_comp.mon_nstd_flag ? _chem_comp.name "4'-fluoro-6-(trifluoromethyl)[1,1'-biphenyl]-2-yl 2-acetamido-2-deoxy-beta-D-galactopyranoside" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C19 XC8 doub 376 n y C18 C17 XC8 sing 377 n y C01 C02 XC8 sing 378 n n C19 C20 XC8 sing 379 n y C17 C16 XC8 doub 380 n y F23 C21 XC8 sing 381 n n N04 C02 XC8 sing 382 n n N04 C05 XC8 sing 383 n n F24 C21 XC8 sing 384 n n C20 C21 XC8 sing 385 n n C20 C25 XC8 doub 386 n y C02 O03 XC8 doub 387 n n C16 C25 XC8 sing 388 n y C16 O15 XC8 sing 389 n n C21 F22 XC8 sing 390 n n C14 O15 XC8 sing 391 n n C14 C05 XC8 sing 392 n n C14 O13 XC8 sing 393 n n C25 C26 XC8 sing 394 n n C32 C26 XC8 doub 395 n y C32 C31 XC8 sing 396 n y C05 C06 XC8 sing 397 n n C06 O07 XC8 sing 398 n n C06 C08 XC8 sing 399 n n O13 C10 XC8 sing 400 n n C10 C08 XC8 sing 401 n n C10 C11 XC8 sing 402 n n C26 C27 XC8 sing 403 n y C31 C29 XC8 doub 404 n y C08 O09 XC8 sing 405 n n C11 O12 XC8 sing 406 n n C27 C28 XC8 doub 407 n y C29 C28 XC8 sing 408 n y C29 F30 XC8 sing 409 n n C11 H111 XC8 sing 410 n n C11 H112 XC8 sing 411 n n C10 H101 XC8 sing 412 n n C01 H013 XC8 sing 413 n n C01 H012 XC8 sing 414 n n C01 H011 XC8 sing 415 n n C05 H051 XC8 sing 416 n n C06 H061 XC8 sing 417 n n C08 H081 XC8 sing 418 n n C14 H141 XC8 sing 419 n n C17 H171 XC8 sing 420 n n C18 H181 XC8 sing 421 n n C19 H191 XC8 sing 422 n n C27 H271 XC8 sing 423 n n C28 H281 XC8 sing 424 n n C31 H311 XC8 sing 425 n n C32 H321 XC8 sing 426 n n N04 H041 XC8 sing 427 n n O07 H071 XC8 sing 428 n n O09 H091 XC8 sing 429 n n O12 H121 XC8 sing 430 n n # _atom_sites.entry_id 8USM _atom_sites.fract_transf_matrix[1][1] 0.019514 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008587 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019625 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 XC8 A 1 201 2 XC8 AM4 ? D 2 XC8 B 1 201 1 XC8 AM4 ? E 3 HOH A 1 301 148 HOH HOH ? E 3 HOH A 2 302 56 HOH HOH ? E 3 HOH A 3 303 149 HOH HOH ? E 3 HOH A 4 304 29 HOH HOH ? E 3 HOH A 5 305 79 HOH HOH ? E 3 HOH A 6 306 187 HOH HOH ? E 3 HOH A 7 307 31 HOH HOH ? E 3 HOH A 8 308 13 HOH HOH ? E 3 HOH A 9 309 21 HOH HOH ? E 3 HOH A 10 310 142 HOH HOH ? E 3 HOH A 11 311 81 HOH HOH ? E 3 HOH A 12 312 40 HOH HOH ? E 3 HOH A 13 313 3 HOH HOH ? E 3 HOH A 14 314 9 HOH HOH ? E 3 HOH A 15 315 80 HOH HOH ? E 3 HOH A 16 316 44 HOH HOH ? E 3 HOH A 17 317 83 HOH HOH ? E 3 HOH A 18 318 22 HOH HOH ? E 3 HOH A 19 319 12 HOH HOH ? E 3 HOH A 20 320 8 HOH HOH ? E 3 HOH A 21 321 39 HOH HOH ? E 3 HOH A 22 322 106 HOH HOH ? E 3 HOH A 23 323 15 HOH HOH ? E 3 HOH A 24 324 19 HOH HOH ? E 3 HOH A 25 325 20 HOH HOH ? E 3 HOH A 26 326 18 HOH HOH ? E 3 HOH A 27 327 77 HOH HOH ? E 3 HOH A 28 328 108 HOH HOH ? E 3 HOH A 29 329 7 HOH HOH ? E 3 HOH A 30 330 146 HOH HOH ? E 3 HOH A 31 331 109 HOH HOH ? F 3 HOH B 1 301 118 HOH HOH ? F 3 HOH B 2 302 35 HOH HOH ? F 3 HOH B 3 303 99 HOH HOH ? F 3 HOH B 4 304 10 HOH HOH ? F 3 HOH B 5 305 2 HOH HOH ? F 3 HOH B 6 306 156 HOH HOH ? F 3 HOH B 7 307 134 HOH HOH ? F 3 HOH B 8 308 46 HOH HOH ? F 3 HOH B 9 309 85 HOH HOH ? F 3 HOH B 10 310 87 HOH HOH ? F 3 HOH B 11 311 1 HOH HOH ? F 3 HOH B 12 312 6 HOH HOH ? F 3 HOH B 13 313 82 HOH HOH ? F 3 HOH B 14 314 4 HOH HOH ? F 3 HOH B 15 315 110 HOH HOH ? F 3 HOH B 16 316 126 HOH HOH ? F 3 HOH B 17 317 107 HOH HOH ? F 3 HOH B 18 318 84 HOH HOH ? F 3 HOH B 19 319 129 HOH HOH ? F 3 HOH B 20 320 23 HOH HOH ? F 3 HOH B 21 321 112 HOH HOH ? F 3 HOH B 22 322 27 HOH HOH ? F 3 HOH B 23 323 127 HOH HOH ? F 3 HOH B 24 324 63 HOH HOH ? F 3 HOH B 25 325 38 HOH HOH ? F 3 HOH B 26 326 78 HOH HOH ? F 3 HOH B 27 327 34 HOH HOH ? F 3 HOH B 28 328 130 HOH HOH ? F 3 HOH B 29 329 91 HOH HOH ? F 3 HOH B 30 330 37 HOH HOH ? F 3 HOH B 31 331 41 HOH HOH ? F 3 HOH B 32 332 17 HOH HOH ? F 3 HOH B 33 333 28 HOH HOH ? F 3 HOH B 34 334 98 HOH HOH ? F 3 HOH B 35 335 93 HOH HOH ? F 3 HOH B 36 336 55 HOH HOH ? F 3 HOH B 37 337 114 HOH HOH ? F 3 HOH B 38 338 24 HOH HOH ? F 3 HOH B 39 339 50 HOH HOH ? F 3 HOH B 40 340 61 HOH HOH ? F 3 HOH B 41 341 136 HOH HOH ? # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 XC8 . . . C 2 23.982 9.646 20.433 1 15.69 ? C11 XC8 201 A 1 HETATM 2 C C10 XC8 . . . C 2 22.947 10.264 21.322 1 15.44 ? C10 XC8 201 A 1 HETATM 3 C C01 XC8 . . . C 2 18.158 14.496 23.512 1 22.4 ? C01 XC8 201 A 1 HETATM 4 C C02 XC8 . . . C 2 19.004 13.796 22.419 1 17.03 ? C02 XC8 201 A 1 HETATM 5 C C05 XC8 . . . C 2 20.79 12.07 21.849 1 15.06 ? C05 XC8 201 A 1 HETATM 6 C C06 XC8 . . . C 2 20.586 10.587 21.917 1 15.78 ? C06 XC8 201 A 1 HETATM 7 C C08 XC8 . . . C 2 21.528 9.955 20.938 1 13.55 ? C08 XC8 201 A 1 HETATM 8 C C14 XC8 . . . C 2 22.247 12.487 22.119 1 16.98 ? C14 XC8 201 A 1 HETATM 9 C C16 XC8 . . . C 2 23.471 14.465 22.335 1 16.44 ? C16 XC8 201 A 1 HETATM 10 C C17 XC8 . . . C 2 24.446 13.858 23.087 1 17.66 ? C17 XC8 201 A 1 HETATM 11 C C18 XC8 . . . C 2 25.575 14.633 23.514 1 21.73 ? C18 XC8 201 A 1 HETATM 12 C C19 XC8 . . . C 2 25.674 16.006 23.155 1 20.95 ? C19 XC8 201 A 1 HETATM 13 C C20 XC8 . . . C 2 24.676 16.603 22.386 1 18.74 ? C20 XC8 201 A 1 HETATM 14 C C21 XC8 . . . C 2 24.758 18.085 21.994 1 27.84 ? C21 XC8 201 A 1 HETATM 15 C C25 XC8 . . . C 2 23.57 15.842 21.979 1 18.25 ? C25 XC8 201 A 1 HETATM 16 C C26 XC8 . . . C 2 22.392 16.377 21.121 1 21.98 ? C26 XC8 201 A 1 HETATM 17 C C27 XC8 . . . C 2 22.494 16.335 19.738 1 21.37 ? C27 XC8 201 A 1 HETATM 18 C C28 XC8 . . . C 2 21.424 16.786 18.94 1 21.18 ? C28 XC8 201 A 1 HETATM 19 C C29 XC8 . . . C 2 20.258 17.256 19.554 1 21.17 ? C29 XC8 201 A 1 HETATM 20 C C31 XC8 . . . C 2 20.143 17.287 20.963 1 23.31 ? C31 XC8 201 A 1 HETATM 21 C C32 XC8 . . . C 2 21.202 16.837 21.752 1 25.01 ? C32 XC8 201 A 1 HETATM 22 F F22 XC8 . . . C 2 24.825 18.216 20.644 1 31.27 ? F22 XC8 201 A 1 HETATM 23 F F23 XC8 . . . C 2 25.9 18.624 22.562 1 30.97 ? F23 XC8 201 A 1 HETATM 24 F F24 XC8 . . . C 2 23.65 18.731 22.49 1 28.86 ? F24 XC8 201 A 1 HETATM 25 F F30 XC8 . . . C 2 19.218 17.694 18.781 1 24.81 ? F30 XC8 201 A 1 HETATM 26 N N04 XC8 . . . C 2 19.961 12.774 22.852 1 15.37 ? N04 XC8 201 A 1 HETATM 27 O O03 XC8 . . . C 2 18.854 14.088 21.251 1 15.58 ? O03 XC8 201 A 1 HETATM 28 O O07 XC8 . . . C 2 19.215 10.308 21.57 1 14.73 ? O07 XC8 201 A 1 HETATM 29 O O09 XC8 . . . C 2 21.192 10.477 19.649 1 12.74 ? O09 XC8 201 A 1 HETATM 30 O O12 XC8 . . . C 2 24.094 10.402 19.264 1 14.65 ? O12 XC8 201 A 1 HETATM 31 O O13 XC8 . . . C 2 23.19 11.766 21.279 1 15.53 ? O13 XC8 201 A 1 HETATM 32 O O15 XC8 . . . C 2 22.32 13.824 21.859 1 14.82 ? O15 XC8 201 A 1 HETATM 33 H H111 XC8 . . . C 2 24.837 9.632 20.892 1 18.84 ? H111 XC8 201 A 1 HETATM 34 H H112 XC8 . . . C 2 23.718 8.74 20.208 1 18.84 ? H112 XC8 201 A 1 HETATM 35 H H101 XC8 . . . C 2 23.065 9.868 22.2 1 18.54 ? H101 XC8 201 A 1 HETATM 36 H H013 XC8 . . . C 2 18.381 14.126 24.38 1 26.88 ? H013 XC8 201 A 1 HETATM 37 H H012 XC8 . . . C 2 18.346 15.447 23.508 1 26.88 ? H012 XC8 201 A 1 HETATM 38 H H011 XC8 . . . C 2 17.215 14.353 23.332 1 26.88 ? H011 XC8 201 A 1 HETATM 39 H H051 XC8 . . . C 2 20.51 12.332 20.958 1 18.08 ? H051 XC8 201 A 1 HETATM 40 H H061 XC8 . . . C 2 20.732 10.223 22.804 1 18.94 ? H061 XC8 201 A 1 HETATM 41 H H081 XC8 . . . C 2 21.44 8.99 20.902 1 16.27 ? H081 XC8 201 A 1 HETATM 42 H H141 XC8 . . . C 2 22.487 12.312 23.043 1 20.38 ? H141 XC8 201 A 1 HETATM 43 H H171 XC8 . . . C 2 24.375 12.959 23.315 1 21.2 ? H171 XC8 201 A 1 HETATM 44 H H181 XC8 . . . C 2 26.242 14.238 24.027 1 26.08 ? H181 XC8 201 A 1 HETATM 45 H H191 XC8 . . . C 2 26.407 16.506 23.434 1 25.14 ? H191 XC8 201 A 1 HETATM 46 H H271 XC8 . . . C 2 23.268 16.01 19.337 1 25.65 ? H271 XC8 201 A 1 HETATM 47 H H281 XC8 . . . C 2 21.493 16.771 18.012 1 25.43 ? H281 XC8 201 A 1 HETATM 48 H H311 XC8 . . . C 2 19.366 17.606 21.361 1 27.98 ? H311 XC8 201 A 1 HETATM 49 H H321 XC8 . . . C 2 21.131 16.838 22.679 1 30.01 ? H321 XC8 201 A 1 HETATM 50 H H041 XC8 . . . C 2 20.041 12.585 23.687 1 18.45 ? H041 XC8 201 A 1 HETATM 51 H H071 XC8 . . . C 2 18.985 9.562 21.907 1 17.68 ? H071 XC8 201 A 1 HETATM 52 H H091 XC8 . . . C 2 21.084 9.834 19.103 1 15.3 ? H091 XC8 201 A 1 HETATM 53 H H121 XC8 . . . C 2 24.204 9.882 18.601 1 17.58 ? H121 XC8 201 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 201 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 53 #