data_8USU # _model_server_result.job_id nBehwNcC_JjFDs5OSEqPiQ _model_server_result.datetime_utc '2024-11-26 17:05:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8usu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8USU # _exptl.entry_id 8USU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.89 _cell.angle_gamma 90 _cell.entry_id 8USU _cell.length_a 124.899 _cell.length_b 56.46 _cell.length_c 107.392 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8USU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 235 n n PA O2A NAD sing 236 n n PA O5B NAD sing 237 n n PA O3 NAD sing 238 n n O2A HOA2 NAD sing 239 n n O5B C5B NAD sing 240 n n C5B C4B NAD sing 241 n n C5B H51A NAD sing 242 n n C5B H52A NAD sing 243 n n C4B O4B NAD sing 244 n n C4B C3B NAD sing 245 n n C4B H4B NAD sing 246 n n O4B C1B NAD sing 247 n n C3B O3B NAD sing 248 n n C3B C2B NAD sing 249 n n C3B H3B NAD sing 250 n n O3B HO3A NAD sing 251 n n C2B O2B NAD sing 252 n n C2B C1B NAD sing 253 n n C2B H2B NAD sing 254 n n O2B HO2A NAD sing 255 n n C1B N9A NAD sing 256 n n C1B H1B NAD sing 257 n n N9A C8A NAD sing 258 n y N9A C4A NAD sing 259 n y C8A N7A NAD doub 260 n y C8A H8A NAD sing 261 n n N7A C5A NAD sing 262 n y C5A C6A NAD sing 263 n y C5A C4A NAD doub 264 n y C6A N6A NAD sing 265 n n C6A N1A NAD doub 266 n y N6A H61A NAD sing 267 n n N6A H62A NAD sing 268 n n N1A C2A NAD sing 269 n y C2A N3A NAD doub 270 n y C2A H2A NAD sing 271 n n N3A C4A NAD sing 272 n y O3 PN NAD sing 273 n n PN O1N NAD doub 274 n n PN O2N NAD sing 275 n n PN O5D NAD sing 276 n n O5D C5D NAD sing 277 n n C5D C4D NAD sing 278 n n C5D H51N NAD sing 279 n n C5D H52N NAD sing 280 n n C4D O4D NAD sing 281 n n C4D C3D NAD sing 282 n n C4D H4D NAD sing 283 n n O4D C1D NAD sing 284 n n C3D O3D NAD sing 285 n n C3D C2D NAD sing 286 n n C3D H3D NAD sing 287 n n O3D HO3N NAD sing 288 n n C2D O2D NAD sing 289 n n C2D C1D NAD sing 290 n n C2D H2D NAD sing 291 n n O2D HO2N NAD sing 292 n n C1D N1N NAD sing 293 n n C1D H1D NAD sing 294 n n N1N C2N NAD sing 295 n y N1N C6N NAD doub 296 n y C2N C3N NAD doub 297 n y C2N H2N NAD sing 298 n n C3N C7N NAD sing 299 n n C3N C4N NAD sing 300 n y C7N O7N NAD doub 301 n n C7N N7N NAD sing 302 n n N7N H71N NAD sing 303 n n N7N H72N NAD sing 304 n n C4N C5N NAD doub 305 n y C4N H4N NAD sing 306 n n C5N C6N NAD sing 307 n y C5N H5N NAD sing 308 n n C6N H6N NAD sing 309 n n # _atom_sites.entry_id 8USU _atom_sites.fract_transf_matrix[1][1] 0.008006 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002897 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017712 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009902 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 401 401 NAD NAD . D 2 NAD B 1 401 401 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 2 19.046 -3.883 34.767 1 48.76 ? PA NAD 401 A 1 HETATM 2 O O1A NAD . . . C 2 18.428 -2.611 34.312 1 48.76 ? O1A NAD 401 A 1 HETATM 3 O O2A NAD . . . C 2 18.2 -5.102 34.86 1 48.76 -1 O2A NAD 401 A 1 HETATM 4 O O5B NAD . . . C 2 20.207 -4.332 33.443 1 48.76 ? O5B NAD 401 A 1 HETATM 5 C C5B NAD . . . C 2 21.243 -5.194 33.688 1 48.76 ? C5B NAD 401 A 1 HETATM 6 C C4B NAD . . . C 2 20.823 -6.708 33.4 1 48.76 ? C4B NAD 401 A 1 HETATM 7 O O4B NAD . . . C 2 20.579 -7.012 31.999 1 48.76 ? O4B NAD 401 A 1 HETATM 8 C C3B NAD . . . C 2 21.934 -7.609 33.932 1 48.76 ? C3B NAD 401 A 1 HETATM 9 O O3B NAD . . . C 2 21.485 -8.275 35.083 1 48.76 ? O3B NAD 401 A 1 HETATM 10 C C2B NAD . . . C 2 22.222 -8.531 32.672 1 48.76 ? C2B NAD 401 A 1 HETATM 11 O O2B NAD . . . C 2 21.562 -9.729 32.892 1 48.76 ? O2B NAD 401 A 1 HETATM 12 C C1B NAD . . . C 2 21.597 -7.781 31.417 1 48.76 ? C1B NAD 401 A 1 HETATM 13 N N9A NAD . . . C 2 22.594 -6.838 30.662 1 48.76 ? N9A NAD 401 A 1 HETATM 14 C C8A NAD . . . C 2 23.74 -6.17 31.21 1 48.76 ? C8A NAD 401 A 1 HETATM 15 N N7A NAD . . . C 2 24.391 -5.426 30.28 1 48.76 ? N7A NAD 401 A 1 HETATM 16 C C5A NAD . . . C 2 23.69 -5.572 29.053 1 48.76 ? C5A NAD 401 A 1 HETATM 17 C C6A NAD . . . C 2 23.889 -5.033 27.709 1 48.76 ? C6A NAD 401 A 1 HETATM 18 N N6A NAD . . . C 2 24.947 -4.167 27.368 1 48.76 ? N6A NAD 401 A 1 HETATM 19 N N1A NAD . . . C 2 22.98 -5.4 26.726 1 48.76 ? N1A NAD 401 A 1 HETATM 20 C C2A NAD . . . C 2 21.935 -6.258 27.072 1 48.76 ? C2A NAD 401 A 1 HETATM 21 N N3A NAD . . . C 2 21.675 -6.803 28.286 1 48.76 ? N3A NAD 401 A 1 HETATM 22 C C4A NAD . . . C 2 22.573 -6.449 29.29 1 48.76 ? C4A NAD 401 A 1 HETATM 23 O O3 NAD . . . C 2 19.955 -3.757 36.258 1 48.76 ? O3 NAD 401 A 1 HETATM 24 P PN NAD . . . C 2 20.117 -4.854 37.482 1 48.76 ? PN NAD 401 A 1 HETATM 25 O O1N NAD . . . C 2 18.848 -5.386 38.065 1 48.76 ? O1N NAD 401 A 1 HETATM 26 O O2N NAD . . . C 2 21.174 -5.865 37.189 1 48.76 -1 O2N NAD 401 A 1 HETATM 27 O O5D NAD . . . C 2 20.857 -4.014 38.991 1 48.76 ? O5D NAD 401 A 1 HETATM 28 C C5D NAD . . . C 2 22.048 -3.395 38.994 1 48.76 ? C5D NAD 401 A 1 HETATM 29 C C4D NAD . . . C 2 22.705 -3.442 40.44 1 48.76 ? C4D NAD 401 A 1 HETATM 30 O O4D NAD . . . C 2 22.008 -2.654 41.471 1 48.76 ? O4D NAD 401 A 1 HETATM 31 C C3D NAD . . . C 2 22.654 -4.869 40.924 1 48.76 ? C3D NAD 401 A 1 HETATM 32 O O3D NAD . . . C 2 23.694 -5.568 40.324 1 48.76 ? O3D NAD 401 A 1 HETATM 33 C C2D NAD . . . C 2 22.817 -4.625 42.471 1 48.76 ? C2D NAD 401 A 1 HETATM 34 O O2D NAD . . . C 2 24.159 -4.56 42.792 1 48.76 ? O2D NAD 401 A 1 HETATM 35 C C1D NAD . . . C 2 22.177 -3.193 42.712 1 48.76 ? C1D NAD 401 A 1 HETATM 36 N N1N NAD . . . C 2 20.636 -3.296 43.425 1 48.76 ? N1N NAD 401 A 1 HETATM 37 C C2N NAD . . . C 2 19.612 -4.034 42.858 1 48.76 ? C2N NAD 401 A 1 HETATM 38 C C3N NAD . . . C 2 18.315 -4.116 43.471 1 48.76 ? C3N NAD 401 A 1 HETATM 39 C C7N NAD . . . C 2 17.133 -4.968 42.813 1 48.76 ? C7N NAD 401 A 1 HETATM 40 O O7N NAD . . . C 2 16.283 -5.458 43.563 1 48.76 ? O7N NAD 401 A 1 HETATM 41 N N7N NAD . . . C 2 17.039 -5.164 41.421 1 48.76 ? N7N NAD 401 A 1 HETATM 42 C C4N NAD . . . C 2 18.148 -3.406 44.683 1 48.76 ? C4N NAD 401 A 1 HETATM 43 C C5N NAD . . . C 2 19.196 -2.648 45.27 1 48.76 ? C5N NAD 401 A 1 HETATM 44 C C6N NAD . . . C 2 20.432 -2.616 44.611 1 48.76 ? C6N NAD 401 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #