data_8UTF # _model_server_result.job_id u9H57GFxt-zd4q-OekSKjw _model_server_result.datetime_utc '2024-11-22 14:31:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8utf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":603}' # _entry.id 8UTF # _exptl.entry_id 8UTF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UTF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UTF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 68 A CYS 68 1_555 D SG CYS 83 a CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 68 B CYS 68 1_555 E SG CYS 83 b CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 C SG CYS 68 C CYS 68 1_555 F SG CYS 83 c CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 D SG CYS 222 a CYS 334 1_555 D SG CYS 231 a CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 D SG CYS 246 a CYS 358 1_555 D SG CYS 254 a CYS 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 D SG CYS 278 a CYS 390 1_555 D SG CYS 283 a CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 D SG CYS 285 a CYS 397 1_555 D SG CYS 308 a CYS 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 E SG CYS 222 b CYS 334 1_555 E SG CYS 231 b CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 E SG CYS 246 b CYS 358 1_555 E SG CYS 254 b CYS 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf10 E SG CYS 278 b CYS 390 1_555 E SG CYS 283 b CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 E SG CYS 285 b CYS 397 1_555 E SG CYS 308 b CYS 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 F SG CYS 222 c CYS 334 1_555 F SG CYS 231 c CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf13 F SG CYS 246 c CYS 358 1_555 F SG CYS 254 c CYS 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf14 F SG CYS 278 c CYS 390 1_555 F SG CYS 283 c CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf15 F SG CYS 285 c CYS 397 1_555 F SG CYS 308 c CYS 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 29 A ASN 29 1_555 I C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 61 A ASN 61 1_555 G C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 A ND2 ASN 67 A ASN 67 1_555 H C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 B ND2 ASN 29 B ASN 29 1_555 L C1 NAG . B NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale5 B ND2 ASN 61 B ASN 61 1_555 J C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale6 B ND2 ASN 67 B ASN 67 1_555 K C1 NAG . B NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 C ND2 ASN 29 C ASN 29 1_555 O C1 NAG . C NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 C ND2 ASN 61 C ASN 61 1_555 M C1 NAG . C NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale9 C ND2 ASN 67 C ASN 67 1_555 N C1 NAG . C NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8UTF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 NAG A 1 601 488 NAG NAG . H 3 NAG A 1 602 489 NAG NAG . I 3 NAG A 1 603 490 NAG NAG . J 3 NAG B 1 601 488 NAG NAG . K 3 NAG B 1 602 489 NAG NAG . L 3 NAG B 1 603 490 NAG NAG . M 3 NAG C 1 601 96 NAG NAG . N 3 NAG C 1 602 97 NAG NAG . O 3 NAG C 1 603 98 NAG NAG . P 4 HOH A 1 701 11 HOH HOH . P 4 HOH A 2 702 2 HOH HOH . P 4 HOH A 3 703 12 HOH HOH . P 4 HOH A 4 704 16 HOH HOH . Q 4 HOH B 1 701 75 HOH HOH . Q 4 HOH B 2 702 28 HOH HOH . Q 4 HOH B 3 703 19 HOH HOH . Q 4 HOH B 4 704 51 HOH HOH . Q 4 HOH B 5 705 18 HOH HOH . Q 4 HOH B 6 706 31 HOH HOH . Q 4 HOH B 7 707 20 HOH HOH . R 4 HOH C 1 701 33 HOH HOH . R 4 HOH C 2 702 135 HOH HOH . R 4 HOH C 3 703 35 HOH HOH . R 4 HOH C 4 704 92 HOH HOH . R 4 HOH C 5 705 41 HOH HOH . R 4 HOH C 6 706 40 HOH HOH . R 4 HOH C 7 707 34 HOH HOH . R 4 HOH C 8 708 136 HOH HOH . S 4 HOH a 1 601 79 HOH HOH . S 4 HOH a 2 602 54 HOH HOH . S 4 HOH a 3 603 64 HOH HOH . S 4 HOH a 4 604 60 HOH HOH . S 4 HOH a 5 605 71 HOH HOH . S 4 HOH a 6 606 85 HOH HOH . S 4 HOH a 7 607 67 HOH HOH . S 4 HOH a 8 608 66 HOH HOH . S 4 HOH a 9 609 63 HOH HOH . S 4 HOH a 10 610 32 HOH HOH . S 4 HOH a 11 611 7 HOH HOH . S 4 HOH a 12 612 73 HOH HOH . S 4 HOH a 13 613 10 HOH HOH . S 4 HOH a 14 614 49 HOH HOH . S 4 HOH a 15 615 45 HOH HOH . S 4 HOH a 16 616 58 HOH HOH . S 4 HOH a 17 617 6 HOH HOH . S 4 HOH a 18 618 74 HOH HOH . S 4 HOH a 19 619 131 HOH HOH . S 4 HOH a 20 620 9 HOH HOH . S 4 HOH a 21 621 61 HOH HOH . S 4 HOH a 22 622 133 HOH HOH . S 4 HOH a 23 623 84 HOH HOH . S 4 HOH a 24 624 68 HOH HOH . S 4 HOH a 25 625 77 HOH HOH . S 4 HOH a 26 626 82 HOH HOH . S 4 HOH a 27 627 87 HOH HOH . S 4 HOH a 28 628 72 HOH HOH . S 4 HOH a 29 629 65 HOH HOH . S 4 HOH a 30 630 53 HOH HOH . S 4 HOH a 31 631 78 HOH HOH . S 4 HOH a 32 632 86 HOH HOH . S 4 HOH a 33 633 56 HOH HOH . S 4 HOH a 34 634 46 HOH HOH . S 4 HOH a 35 635 59 HOH HOH . S 4 HOH a 36 636 52 HOH HOH . S 4 HOH a 37 637 89 HOH HOH . S 4 HOH a 38 638 106 HOH HOH . S 4 HOH a 39 639 62 HOH HOH . S 4 HOH a 40 640 130 HOH HOH . S 4 HOH a 41 641 55 HOH HOH . S 4 HOH a 42 642 81 HOH HOH . S 4 HOH a 43 643 80 HOH HOH . S 4 HOH a 44 644 76 HOH HOH . S 4 HOH a 45 645 70 HOH HOH . T 4 HOH b 1 601 108 HOH HOH . T 4 HOH b 2 602 83 HOH HOH . T 4 HOH b 3 603 113 HOH HOH . T 4 HOH b 4 604 95 HOH HOH . T 4 HOH b 5 605 115 HOH HOH . T 4 HOH b 6 606 103 HOH HOH . T 4 HOH b 7 607 107 HOH HOH . T 4 HOH b 8 608 109 HOH HOH . T 4 HOH b 9 609 122 HOH HOH . T 4 HOH b 10 610 42 HOH HOH . T 4 HOH b 11 611 104 HOH HOH . T 4 HOH b 12 612 101 HOH HOH . T 4 HOH b 13 613 116 HOH HOH . T 4 HOH b 14 614 21 HOH HOH . T 4 HOH b 15 615 44 HOH HOH . T 4 HOH b 16 616 112 HOH HOH . T 4 HOH b 17 617 110 HOH HOH . T 4 HOH b 18 618 97 HOH HOH . T 4 HOH b 19 619 121 HOH HOH . T 4 HOH b 20 620 88 HOH HOH . T 4 HOH b 21 621 119 HOH HOH . T 4 HOH b 22 622 22 HOH HOH . T 4 HOH b 23 623 14 HOH HOH . T 4 HOH b 24 624 102 HOH HOH . T 4 HOH b 25 625 26 HOH HOH . T 4 HOH b 26 626 25 HOH HOH . T 4 HOH b 27 627 114 HOH HOH . T 4 HOH b 28 628 100 HOH HOH . T 4 HOH b 29 629 117 HOH HOH . T 4 HOH b 30 630 111 HOH HOH . T 4 HOH b 31 631 91 HOH HOH . T 4 HOH b 32 632 8 HOH HOH . T 4 HOH b 33 633 132 HOH HOH . T 4 HOH b 34 634 43 HOH HOH . T 4 HOH b 35 635 29 HOH HOH . T 4 HOH b 36 636 39 HOH HOH . T 4 HOH b 37 637 105 HOH HOH . T 4 HOH b 38 638 27 HOH HOH . T 4 HOH b 39 639 123 HOH HOH . T 4 HOH b 40 640 93 HOH HOH . T 4 HOH b 41 641 30 HOH HOH . T 4 HOH b 42 642 134 HOH HOH . T 4 HOH b 43 643 90 HOH HOH . T 4 HOH b 44 644 98 HOH HOH . T 4 HOH b 45 645 15 HOH HOH . U 4 HOH c 1 601 120 HOH HOH . U 4 HOH c 2 602 125 HOH HOH . U 4 HOH c 3 603 127 HOH HOH . U 4 HOH c 4 604 37 HOH HOH . U 4 HOH c 5 605 69 HOH HOH . U 4 HOH c 6 606 129 HOH HOH . U 4 HOH c 7 607 126 HOH HOH . U 4 HOH c 8 608 23 HOH HOH . U 4 HOH c 9 609 5 HOH HOH . U 4 HOH c 10 610 36 HOH HOH . U 4 HOH c 11 611 38 HOH HOH . U 4 HOH c 12 612 1 HOH HOH . U 4 HOH c 13 613 118 HOH HOH . U 4 HOH c 14 614 96 HOH HOH . U 4 HOH c 15 615 99 HOH HOH . U 4 HOH c 16 616 47 HOH HOH . U 4 HOH c 17 617 4 HOH HOH . U 4 HOH c 18 618 3 HOH HOH . U 4 HOH c 19 619 94 HOH HOH . U 4 HOH c 20 620 13 HOH HOH . U 4 HOH c 21 621 48 HOH HOH . U 4 HOH c 22 622 57 HOH HOH . U 4 HOH c 23 623 124 HOH HOH . U 4 HOH c 24 624 50 HOH HOH . U 4 HOH c 25 625 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . O 3 221.066 183.76 244.133 1 118.85 ? C1 NAG 603 C 1 HETATM 2 C C2 NAG . . . O 3 221.187 184.763 245.29 1 122.76 ? C2 NAG 603 C 1 HETATM 3 C C3 NAG . . . O 3 222.174 184.227 246.326 1 125.69 ? C3 NAG 603 C 1 HETATM 4 C C4 NAG . . . O 3 221.756 182.829 246.768 1 129.28 ? C4 NAG 603 C 1 HETATM 5 C C5 NAG . . . O 3 221.598 181.935 245.534 1 125.37 ? C5 NAG 603 C 1 HETATM 6 C C6 NAG . . . O 3 221.138 180.53 245.85 1 123.26 ? C6 NAG 603 C 1 HETATM 7 C C7 NAG . . . O 3 222.671 186.442 244.181 1 117.04 ? C7 NAG 603 C 1 HETATM 8 C C8 NAG . . . O 3 222.75 187.91 243.84 1 111.93 ? C8 NAG 603 C 1 HETATM 9 N N2 NAG . . . O 3 221.547 186.084 244.834 1 118.98 ? N2 NAG 603 C 1 HETATM 10 O O3 NAG . . . O 3 222.218 185.126 247.401 1 124.44 ? O3 NAG 603 C 1 HETATM 11 O O4 NAG . . . O 3 222.75 182.348 247.643 1 131.02 ? O4 NAG 603 C 1 HETATM 12 O O5 NAG . . . O 3 220.657 182.519 244.658 1 126.63 ? O5 NAG 603 C 1 HETATM 13 O O6 NAG . . . O 3 219.781 180.389 245.504 1 116.72 ? O6 NAG 603 C 1 HETATM 14 O O7 NAG . . . O 3 223.57 185.672 243.874 1 115.99 ? O7 NAG 603 C 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 14 #