data_8UTO # _model_server_result.job_id gDMYi1JKfiUB5rI9Evuopg _model_server_result.datetime_utc '2024-11-14 19:33:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8uto # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":501}' # _entry.id 8UTO # _exptl.entry_id 8UTO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 H MG MG . K MG 501 1_555 I O2B ANP . K ANP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc2 H MG MG . K MG 501 1_555 I O1G ANP . K ANP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc3 C OE2 GLU 71 A GLU 71 1_555 L MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc4 K O1G GTP . A GTP 501 1_555 L MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc5 K O1B GTP . A GTP 501 1_555 L MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc6 E OE1 GLU 71 E GLU 71 1_555 P MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc7 O O1G GTP . E GTP 501 1_555 P MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc8 O O1B GTP . E GTP 501 1_555 P MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc9 G OE1 GLU 71 S GLU 71 1_555 T MG MG . S MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc10 S O1G GTP . S GTP 501 1_555 T MG MG . S MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc11 S O3B GTP . S GTP 501 1_555 T MG MG . S MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc12 S O1B GTP . S GTP 501 1_555 T MG MG . S MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 8UTO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 4 MG K 1 501 501 MG MG . I 5 ANP K 1 502 502 ANP ANP . J 5 ANP N 1 501 501 ANP ANP . K 6 GTP A 1 501 501 GTP GTP . L 4 MG A 1 502 502 MG MG . M 7 GDP B 1 501 501 GDP GDP . N 8 TA1 B 1 502 502 TA1 TA1 . O 6 GTP E 1 501 501 GTP GTP . P 4 MG E 1 502 502 MG MG . Q 7 GDP I 1 501 501 GDP GDP . R 8 TA1 I 1 502 502 TA1 TA1 . S 6 GTP S 1 501 501 GTP GTP . T 4 MG S 1 502 502 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . J 5 163.693 150.266 216.431 1 147.7 ? PG ANP 501 N 1 HETATM 2 O O1G ANP . . . J 5 164.32 151.597 216.702 1 141 ? O1G ANP 501 N 1 HETATM 3 O O2G ANP . . . J 5 164.381 149.605 215.177 1 144.29 ? O2G ANP 501 N 1 HETATM 4 O O3G ANP . . . J 5 163.89 149.327 217.688 1 143.29 ? O3G ANP 501 N 1 HETATM 5 P PB ANP . . . J 5 161.336 148.968 215.844 1 145.08 ? PB ANP 501 N 1 HETATM 6 O O1B ANP . . . J 5 162.162 147.906 216.486 1 147.03 ? O1B ANP 501 N 1 HETATM 7 O O2B ANP . . . J 5 159.9 148.951 216.444 1 145.63 ? O2B ANP 501 N 1 HETATM 8 N N3B ANP . . . J 5 162.04 150.463 216.126 1 145.54 ? N3B ANP 501 N 1 HETATM 9 P PA ANP . . . J 5 160.54 147.34 213.847 1 143.63 ? PA ANP 501 N 1 HETATM 10 O O1A ANP . . . J 5 159.147 147.285 214.346 1 145.38 ? O1A ANP 501 N 1 HETATM 11 O O2A ANP . . . J 5 160.684 147.275 212.325 1 142.28 ? O2A ANP 501 N 1 HETATM 12 O O3A ANP . . . J 5 161.257 148.675 214.317 1 142.17 ? O3A ANP 501 N 1 HETATM 13 O O5' ANP . . . J 5 161.342 146.174 214.559 1 142.77 ? O5' ANP 501 N 1 HETATM 14 C C5' ANP . . . J 5 160.849 144.824 214.653 1 142.34 ? C5' ANP 501 N 1 HETATM 15 C C4' ANP . . . J 5 160.925 144.161 213.299 1 143.65 ? C4' ANP 501 N 1 HETATM 16 O O4' ANP . . . J 5 162.3 143.959 212.928 1 141.31 ? O4' ANP 501 N 1 HETATM 17 C C3' ANP . . . J 5 160.266 142.783 213.217 1 144.61 ? C3' ANP 501 N 1 HETATM 18 O O3' ANP . . . J 5 158.982 142.87 212.61 1 144.55 ? O3' ANP 501 N 1 HETATM 19 C C2' ANP . . . J 5 161.244 141.939 212.375 1 144.58 ? C2' ANP 501 N 1 HETATM 20 O O2' ANP . . . J 5 160.61 141.384 211.228 1 145.75 ? O2' ANP 501 N 1 HETATM 21 C C1' ANP . . . J 5 162.317 142.945 211.952 1 144.18 ? C1' ANP 501 N 1 HETATM 22 N N9 ANP . . . J 5 163.674 142.406 211.86 1 145.66 ? N9 ANP 501 N 1 HETATM 23 C C8 ANP . . . J 5 164.832 143.06 212.192 1 145.36 ? C8 ANP 501 N 1 HETATM 24 N N7 ANP . . . J 5 165.92 142.354 212.006 1 146.01 ? N7 ANP 501 N 1 HETATM 25 C C5 ANP . . . J 5 165.446 141.148 211.509 1 146.51 ? C5 ANP 501 N 1 HETATM 26 C C6 ANP . . . J 5 166.1 139.967 211.107 1 145.6 ? C6 ANP 501 N 1 HETATM 27 N N6 ANP . . . J 5 167.424 139.801 211.147 1 145.18 ? N6 ANP 501 N 1 HETATM 28 N N1 ANP . . . J 5 165.333 138.946 210.66 1 143.53 ? N1 ANP 501 N 1 HETATM 29 C C2 ANP . . . J 5 164.007 139.106 210.622 1 142.68 ? C2 ANP 501 N 1 HETATM 30 N N3 ANP . . . J 5 163.282 140.173 210.969 1 144.31 ? N3 ANP 501 N 1 HETATM 31 C C4 ANP . . . J 5 164.066 141.167 211.41 1 146.09 ? C4 ANP 501 N 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 31 #