data_8UTU # _model_server_result.job_id u1gGvjoCBWWBT126e5mcJg _model_server_result.datetime_utc '2024-11-22 13:17:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8utu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 8UTU # _exptl.entry_id 8UTU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 104 K SER 104 1_555 E MG MG . K MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc2 A OG SER 215 K SER 215 1_555 E MG MG . K MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc3 E MG MG . K MG 501 1_555 F O2B ANP . K ANP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc4 E MG MG . K MG 501 1_555 F O3G ANP . K ANP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc5 B OE2 GLU 71 A GLU 71 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc6 G O1G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc7 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc8 D OE1 GLU 71 E GLU 71 1_555 L MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.841 ? metalc ? metalc9 K O1G GTP . E GTP 501 1_555 L MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc10 K O2G GTP . E GTP 501 1_555 L MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? metalc ? metalc11 K O3B GTP . E GTP 501 1_555 L MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc12 K O1B GTP . E GTP 501 1_555 L MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 224 n n PG O2G GTP sing 225 n n PG O3G GTP sing 226 n n PG O3B GTP sing 227 n n O2G HOG2 GTP sing 228 n n O3G HOG3 GTP sing 229 n n O3B PB GTP sing 230 n n PB O1B GTP doub 231 n n PB O2B GTP sing 232 n n PB O3A GTP sing 233 n n O2B HOB2 GTP sing 234 n n O3A PA GTP sing 235 n n PA O1A GTP doub 236 n n PA O2A GTP sing 237 n n PA O5' GTP sing 238 n n O2A HOA2 GTP sing 239 n n O5' C5' GTP sing 240 n n C5' C4' GTP sing 241 n n C5' H5' GTP sing 242 n n C5' "H5''" GTP sing 243 n n C4' O4' GTP sing 244 n n C4' C3' GTP sing 245 n n C4' H4' GTP sing 246 n n O4' C1' GTP sing 247 n n C3' O3' GTP sing 248 n n C3' C2' GTP sing 249 n n C3' H3' GTP sing 250 n n O3' HO3' GTP sing 251 n n C2' O2' GTP sing 252 n n C2' C1' GTP sing 253 n n C2' H2' GTP sing 254 n n O2' HO2' GTP sing 255 n n C1' N9 GTP sing 256 n n C1' H1' GTP sing 257 n n N9 C8 GTP sing 258 n y N9 C4 GTP sing 259 n y C8 N7 GTP doub 260 n y C8 H8 GTP sing 261 n n N7 C5 GTP sing 262 n y C5 C6 GTP sing 263 n n C5 C4 GTP doub 264 n y C6 O6 GTP doub 265 n n C6 N1 GTP sing 266 n n N1 C2 GTP sing 267 n n N1 HN1 GTP sing 268 n n C2 N2 GTP sing 269 n n C2 N3 GTP doub 270 n n N2 HN21 GTP sing 271 n n N2 HN22 GTP sing 272 n n N3 C4 GTP sing 273 n n # _atom_sites.entry_id 8UTU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 MG K 1 501 501 MG MG . F 5 ANP K 1 502 502 ANP ANP . G 6 GTP A 1 501 501 GTP GTP . H 4 MG A 1 502 502 MG MG . I 7 GDP B 1 501 501 GDP GDP . J 8 TA1 B 1 502 502 TA1 TA1 . K 6 GTP E 1 501 501 GTP GTP . L 4 MG E 1 502 502 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . G 6 166.813 183.208 126.906 1 62.83 ? PG GTP 501 A 1 HETATM 2 O O1G GTP . . . G 6 166.06 184.351 127.54 1 62.88 ? O1G GTP 501 A 1 HETATM 3 O O2G GTP . . . G 6 166.195 181.901 127.33 1 69.27 ? O2G GTP 501 A 1 HETATM 4 O O3G GTP . . . G 6 168.257 183.245 127.336 1 61.44 ? O3G GTP 501 A 1 HETATM 5 O O3B GTP . . . G 6 166.722 183.367 125.309 1 61.95 ? O3B GTP 501 A 1 HETATM 6 P PB GTP . . . G 6 167.011 184.795 124.63 1 50.26 ? PB GTP 501 A 1 HETATM 7 O O1B GTP . . . G 6 166.25 185.875 125.358 1 61.47 ? O1B GTP 501 A 1 HETATM 8 O O2B GTP . . . G 6 166.65 184.764 123.166 1 62.74 ? O2B GTP 501 A 1 HETATM 9 O O3A GTP . . . G 6 168.59 185.032 124.806 1 52.44 ? O3A GTP 501 A 1 HETATM 10 P PA GTP . . . G 6 169.318 186.16 123.921 1 56.14 ? PA GTP 501 A 1 HETATM 11 O O1A GTP . . . G 6 168.948 185.979 122.472 1 61.17 ? O1A GTP 501 A 1 HETATM 12 O O2A GTP . . . G 6 168.952 187.539 124.411 1 62.58 ? O2A GTP 501 A 1 HETATM 13 O O5' GTP . . . G 6 170.889 185.888 124.124 1 62.75 ? O5' GTP 501 A 1 HETATM 14 C C5' GTP . . . G 6 171.781 186.942 124.403 1 63.74 ? C5' GTP 501 A 1 HETATM 15 C C4' GTP . . . G 6 172.401 187.478 123.119 1 53.84 ? C4' GTP 501 A 1 HETATM 16 O O4' GTP . . . G 6 171.417 188.107 122.327 1 67.15 ? O4' GTP 501 A 1 HETATM 17 C C3' GTP . . . G 6 173.465 188.522 123.4 1 53.85 ? C3' GTP 501 A 1 HETATM 18 O O3' GTP . . . G 6 174.752 188.02 123.124 1 60.61 ? O3' GTP 501 A 1 HETATM 19 C C2' GTP . . . G 6 173.145 189.693 122.496 1 56.45 ? C2' GTP 501 A 1 HETATM 20 O O2' GTP . . . G 6 174.264 190.047 121.713 1 63.05 ? O2' GTP 501 A 1 HETATM 21 C C1' GTP . . . G 6 171.955 189.238 121.666 1 67.2 ? C1' GTP 501 A 1 HETATM 22 N N9 GTP . . . G 6 170.943 190.304 121.581 1 62.32 ? N9 GTP 501 A 1 HETATM 23 C C8 GTP . . . G 6 169.922 190.518 122.465 1 57.01 ? C8 GTP 501 A 1 HETATM 24 N N7 GTP . . . G 6 169.204 191.578 122.035 1 60.62 ? N7 GTP 501 A 1 HETATM 25 C C5 GTP . . . G 6 169.744 192.035 120.887 1 52.49 ? C5 GTP 501 A 1 HETATM 26 C C6 GTP . . . G 6 169.402 193.081 120.044 1 55.41 ? C6 GTP 501 A 1 HETATM 27 O O6 GTP . . . G 6 168.436 193.793 120.3 1 72.38 ? O6 GTP 501 A 1 HETATM 28 N N1 GTP . . . G 6 170.149 193.322 118.915 1 55.02 ? N1 GTP 501 A 1 HETATM 29 C C2 GTP . . . G 6 171.234 192.523 118.629 1 59.41 ? C2 GTP 501 A 1 HETATM 30 N N2 GTP . . . G 6 171.955 192.76 117.538 1 68.48 ? N2 GTP 501 A 1 HETATM 31 N N3 GTP . . . G 6 171.57 191.485 119.473 1 62.51 ? N3 GTP 501 A 1 HETATM 32 C C4 GTP . . . G 6 170.837 191.242 120.585 1 58.2 ? C4 GTP 501 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 53 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #