data_8UTU # _model_server_result.job_id daOwRpVt-gwWbMZ16b873Q _model_server_result.datetime_utc '2024-11-22 13:43:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8utu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 8UTU # _exptl.entry_id 8UTU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 104 K SER 104 1_555 E MG MG . K MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc2 A OG SER 215 K SER 215 1_555 E MG MG . K MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc3 E MG MG . K MG 501 1_555 F O2B ANP . K ANP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc4 E MG MG . K MG 501 1_555 F O3G ANP . K ANP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc5 B OE2 GLU 71 A GLU 71 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc6 G O1G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc7 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc8 D OE1 GLU 71 E GLU 71 1_555 L MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.841 ? metalc ? metalc9 K O1G GTP . E GTP 501 1_555 L MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc10 K O2G GTP . E GTP 501 1_555 L MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? metalc ? metalc11 K O3B GTP . E GTP 501 1_555 L MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc12 K O1B GTP . E GTP 501 1_555 L MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 8UTU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 MG K 1 501 501 MG MG . F 5 ANP K 1 502 502 ANP ANP . G 6 GTP A 1 501 501 GTP GTP . H 4 MG A 1 502 502 MG MG . I 7 GDP B 1 501 501 GDP GDP . J 8 TA1 B 1 502 502 TA1 TA1 . K 6 GTP E 1 501 501 GTP GTP . L 4 MG E 1 502 502 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . F 5 169.731 148.82 132.687 1 130.05 ? PG ANP 502 K 1 HETATM 2 O O1G ANP . . . F 5 168.741 148.141 131.774 1 129.8 ? O1G ANP 502 K 1 HETATM 3 O O2G ANP . . . F 5 169.604 150.321 132.719 1 127.75 ? O2G ANP 502 K 1 HETATM 4 O O3G ANP . . . F 5 169.829 148.186 134.051 1 127.78 ? O3G ANP 502 K 1 HETATM 5 P PB ANP . . . F 5 172.059 146.981 132.195 1 131.39 ? PB ANP 502 K 1 HETATM 6 O O1B ANP . . . F 5 173.523 147.136 131.866 1 129.43 ? O1B ANP 502 K 1 HETATM 7 O O2B ANP . . . F 5 171.677 146.493 133.57 1 130.82 ? O2B ANP 502 K 1 HETATM 8 N N3B ANP . . . F 5 171.283 148.525 131.946 1 125.43 ? N3B ANP 502 K 1 HETATM 9 P PA ANP . . . F 5 170.928 144.493 131.631 1 128.52 ? PA ANP 502 K 1 HETATM 10 O O1A ANP . . . F 5 171.976 143.905 132.544 1 129.18 ? O1A ANP 502 K 1 HETATM 11 O O2A ANP . . . F 5 169.508 144.648 132.117 1 128.05 ? O2A ANP 502 K 1 HETATM 12 O O3A ANP . . . F 5 171.45 145.932 131.139 1 128.4 ? O3A ANP 502 K 1 HETATM 13 O O5' ANP . . . F 5 170.899 143.641 130.268 1 127.09 ? O5' ANP 502 K 1 HETATM 14 C C5' ANP . . . F 5 169.906 143.901 129.277 1 128.27 ? C5' ANP 502 K 1 HETATM 15 C C4' ANP . . . F 5 168.92 142.742 129.189 1 129.68 ? C4' ANP 502 K 1 HETATM 16 O O4' ANP . . . F 5 169.291 141.87 128.119 1 129.97 ? O4' ANP 502 K 1 HETATM 17 C C3' ANP . . . F 5 168.907 141.922 130.469 1 130.24 ? C3' ANP 502 K 1 HETATM 18 O O3' ANP . . . F 5 167.571 141.847 130.976 1 128.59 ? O3' ANP 502 K 1 HETATM 19 C C2' ANP . . . F 5 169.467 140.557 130.098 1 127.52 ? C2' ANP 502 K 1 HETATM 20 O O2' ANP . . . F 5 168.58 139.478 130.417 1 126.33 ? O2' ANP 502 K 1 HETATM 21 C C1' ANP . . . F 5 169.722 140.597 128.602 1 127.46 ? C1' ANP 502 K 1 HETATM 22 N N9 ANP . . . F 5 171.178 140.454 128.395 1 127.75 ? N9 ANP 502 K 1 HETATM 23 C C8 ANP . . . F 5 172.074 141.454 128.442 1 128.54 ? C8 ANP 502 K 1 HETATM 24 N N7 ANP . . . F 5 173.33 140.995 128.219 1 129.85 ? N7 ANP 502 K 1 HETATM 25 C C5 ANP . . . F 5 173.245 139.668 128.029 1 129.6 ? C5 ANP 502 K 1 HETATM 26 C C6 ANP . . . F 5 174.195 138.571 127.748 1 128.63 ? C6 ANP 502 K 1 HETATM 27 N N6 ANP . . . F 5 175.522 138.811 127.622 1 127.69 ? N6 ANP 502 K 1 HETATM 28 N N1 ANP . . . F 5 173.696 137.323 127.618 1 128.19 ? N1 ANP 502 K 1 HETATM 29 C C2 ANP . . . F 5 172.38 137.073 127.74 1 127.68 ? C2 ANP 502 K 1 HETATM 30 N N3 ANP . . . F 5 171.461 138.021 127.996 1 126.88 ? N3 ANP 502 K 1 HETATM 31 C C4 ANP . . . F 5 171.825 139.315 128.148 1 127.74 ? C4 ANP 502 K 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #