data_8UTV # _model_server_result.job_id ZLGBGJziFA-oZ4i0l_AXaA _model_server_result.datetime_utc '2024-11-14 19:27:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8utv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 8UTV # _exptl.entry_id 8UTV _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 69 E ASP 69 1_555 F MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc2 A O GLU 71 E GLU 71 1_555 F MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc3 B OD2 ASP 69 A ASP 69 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc4 B O GLU 71 A GLU 71 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 218 n n PG O2G GTP sing 219 n n PG O3G GTP sing 220 n n PG O3B GTP sing 221 n n O2G HOG2 GTP sing 222 n n O3G HOG3 GTP sing 223 n n O3B PB GTP sing 224 n n PB O1B GTP doub 225 n n PB O2B GTP sing 226 n n PB O3A GTP sing 227 n n O2B HOB2 GTP sing 228 n n O3A PA GTP sing 229 n n PA O1A GTP doub 230 n n PA O2A GTP sing 231 n n PA O5' GTP sing 232 n n O2A HOA2 GTP sing 233 n n O5' C5' GTP sing 234 n n C5' C4' GTP sing 235 n n C5' H5' GTP sing 236 n n C5' "H5''" GTP sing 237 n n C4' O4' GTP sing 238 n n C4' C3' GTP sing 239 n n C4' H4' GTP sing 240 n n O4' C1' GTP sing 241 n n C3' O3' GTP sing 242 n n C3' C2' GTP sing 243 n n C3' H3' GTP sing 244 n n O3' HO3' GTP sing 245 n n C2' O2' GTP sing 246 n n C2' C1' GTP sing 247 n n C2' H2' GTP sing 248 n n O2' HO2' GTP sing 249 n n C1' N9 GTP sing 250 n n C1' H1' GTP sing 251 n n N9 C8 GTP sing 252 n y N9 C4 GTP sing 253 n y C8 N7 GTP doub 254 n y C8 H8 GTP sing 255 n n N7 C5 GTP sing 256 n y C5 C6 GTP sing 257 n n C5 C4 GTP doub 258 n y C6 O6 GTP doub 259 n n C6 N1 GTP sing 260 n n N1 C2 GTP sing 261 n n N1 HN1 GTP sing 262 n n C2 N2 GTP sing 263 n n C2 N3 GTP doub 264 n n N2 HN21 GTP sing 265 n n N2 HN22 GTP sing 266 n n N3 C4 GTP sing 267 n n # _atom_sites.entry_id 8UTV _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 GTP E 1 501 501 GTP GTP . F 5 MG E 1 502 502 MG MG . G 4 GTP A 1 501 501 GTP GTP . H 5 MG A 1 502 502 MG MG . I 6 GDP B 1 501 501 GDP GDP . J 7 TA1 B 1 502 502 TA1 TA1 . K 8 ADP K 1 801 801 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . E 4 177.136 180.269 262.165 1 72.67 ? PG GTP 501 E 1 HETATM 2 O O1G GTP . . . E 4 175.863 180.254 262.974 1 72.67 ? O1G GTP 501 E 1 HETATM 3 O O2G GTP . . . E 4 178.097 179.256 262.729 1 72.67 ? O2G GTP 501 E 1 HETATM 4 O O3G GTP . . . E 4 177.763 181.638 262.224 1 72.67 ? O3G GTP 501 E 1 HETATM 5 O O3B GTP . . . E 4 176.791 179.9 260.64 1 72.67 ? O3B GTP 501 E 1 HETATM 6 P PB GTP . . . E 4 175.537 180.591 259.915 1 72.67 ? PB GTP 501 E 1 HETATM 7 O O1B GTP . . . E 4 174.341 180.574 260.832 1 72.67 ? O1B GTP 501 E 1 HETATM 8 O O2B GTP . . . E 4 175.234 179.912 258.606 1 72.67 ? O2B GTP 501 E 1 HETATM 9 O O3A GTP . . . E 4 175.978 182.106 259.639 1 72.67 ? O3A GTP 501 E 1 HETATM 10 P PA GTP . . . E 4 174.874 183.116 259.062 1 72.67 ? PA GTP 501 E 1 HETATM 11 O O1A GTP . . . E 4 174.756 182.938 257.573 1 72.67 ? O1A GTP 501 E 1 HETATM 12 O O2A GTP . . . E 4 173.553 182.901 259.747 1 72.67 ? O2A GTP 501 E 1 HETATM 13 O O5' GTP . . . E 4 175.444 184.575 259.402 1 72.67 ? O5' GTP 501 E 1 HETATM 14 C C5' GTP . . . E 4 174.571 185.666 259.565 1 72.67 ? C5' GTP 501 E 1 HETATM 15 C C4' GTP . . . E 4 174.347 186.392 258.248 1 72.67 ? C4' GTP 501 E 1 HETATM 16 O O4' GTP . . . E 4 173.459 185.651 257.439 1 72.67 ? O4' GTP 501 E 1 HETATM 17 C C3' GTP . . . E 4 173.707 187.745 258.48 1 72.67 ? C3' GTP 501 E 1 HETATM 18 O O3' GTP . . . E 4 174.381 188.742 257.753 1 72.67 ? O3' GTP 501 E 1 HETATM 19 C C2' GTP . . . E 4 172.295 187.579 257.972 1 72.67 ? C2' GTP 501 E 1 HETATM 20 O O2' GTP . . . E 4 171.764 188.762 257.434 1 72.67 ? O2' GTP 501 E 1 HETATM 21 C C1' GTP . . . E 4 172.452 186.498 256.923 1 72.67 ? C1' GTP 501 E 1 HETATM 22 N N9 GTP . . . E 4 171.201 185.756 256.712 1 72.67 ? N9 GTP 501 E 1 HETATM 23 C C8 GTP . . . E 4 170.749 184.704 257.455 1 72.67 ? C8 GTP 501 E 1 HETATM 24 N N7 GTP . . . E 4 169.577 184.289 256.93 1 72.67 ? N7 GTP 501 E 1 HETATM 25 C C5 GTP . . . E 4 169.282 185.053 255.86 1 72.67 ? C5 GTP 501 E 1 HETATM 26 C C6 GTP . . . E 4 168.217 185.051 254.977 1 72.67 ? C6 GTP 501 E 1 HETATM 27 O O6 GTP . . . E 4 167.307 184.235 255.102 1 72.67 ? O6 GTP 501 E 1 HETATM 28 N N1 GTP . . . E 4 168.181 185.969 253.956 1 72.67 ? N1 GTP 501 E 1 HETATM 29 C C2 GTP . . . E 4 169.199 186.881 253.818 1 72.67 ? C2 GTP 501 E 1 HETATM 30 N N2 GTP . . . E 4 169.157 187.767 252.832 1 72.67 ? N2 GTP 501 E 1 HETATM 31 N N3 GTP . . . E 4 170.254 186.879 254.7 1 72.67 ? N3 GTP 501 E 1 HETATM 32 C C4 GTP . . . E 4 170.297 185.978 255.707 1 72.67 ? C4 GTP 501 E 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 116 _model_server_stats.create_model_time_ms 118 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #