data_8UUU # _model_server_result.job_id JLAYSOK6k1CxpJngRTstWw _model_server_result.datetime_utc '2024-10-18 05:22:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8uuu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":412}' # _entry.id 8UUU # _exptl.entry_id 8UUU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UUU _cell.length_a 115.393 _cell.length_b 115.393 _cell.length_c 220.691 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UUU _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall 'I 4bw 2bw' _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 M N N ? 6 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 20 A HIS 17 1_555 I ZN ZN . A ZN 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc2 A OD1 ASP 65 A ASP 62 1_555 E ZN ZN . A ZN 404 10_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc3 A OE2 GLU 70 A GLU 67 1_555 I ZN ZN . A ZN 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc4 A ND1 HIS 76 A HIS 73 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc5 A ND1 HIS 92 A HIS 89 1_555 G ZN ZN . A ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc6 A OD2 ASP 111 A ASP 108 1_555 G ZN ZN . A ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc7 A SG CYS 114 A CYS 111 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? metalc ? metalc8 A SG CYS 195 A CYS 192 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc9 A SG CYS 227 A CYS 224 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc10 A SG CYS 273 A CYS 270 1_555 G ZN ZN . A ZN 406 15_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.911 ? metalc ? metalc11 D ZN ZN . A ZN 403 1_555 O O HOH . A HOH 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc12 D ZN ZN . A ZN 403 1_555 O O HOH . A HOH 570 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 135 n n C1 C2 GOL sing 136 n n C1 H11 GOL sing 137 n n C1 H12 GOL sing 138 n n O1 HO1 GOL sing 139 n n C2 O2 GOL sing 140 n n C2 C3 GOL sing 141 n n C2 H2 GOL sing 142 n n O2 HO2 GOL sing 143 n n C3 O3 GOL sing 144 n n C3 H31 GOL sing 145 n n C3 H32 GOL sing 146 n n O3 HO3 GOL sing 147 n n # _atom_sites.entry_id 8UUU _atom_sites.fract_transf_matrix[1][1] 0.008666 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008666 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004531 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XYR A 1 401 401 XYR J13 . C 3 ACT A 1 402 401 ACT ACT . D 4 ZN A 1 403 4 ZN ZN . E 4 ZN A 1 404 8 ZN ZN . F 4 ZN A 1 405 10 ZN ZN . G 4 ZN A 1 406 11 ZN ZN . H 4 ZN A 1 407 12 ZN ZN . I 4 ZN A 1 408 13 ZN ZN . J 5 CL A 1 409 1 CL CL . K 5 CL A 1 410 2 CL CL . L 5 CL A 1 411 3 CL CL . M 6 GOL A 1 412 1 GOL GOL . N 6 GOL A 1 413 4 GOL GOL . O 7 HOH A 1 501 36 HOH HOH . O 7 HOH A 2 502 28 HOH HOH . O 7 HOH A 3 503 19 HOH HOH . O 7 HOH A 4 504 61 HOH HOH . O 7 HOH A 5 505 75 HOH HOH . O 7 HOH A 6 506 76 HOH HOH . O 7 HOH A 7 507 77 HOH HOH . O 7 HOH A 8 508 55 HOH HOH . O 7 HOH A 9 509 86 HOH HOH . O 7 HOH A 10 510 73 HOH HOH . O 7 HOH A 11 511 42 HOH HOH . O 7 HOH A 12 512 87 HOH HOH . O 7 HOH A 13 513 45 HOH HOH . O 7 HOH A 14 514 79 HOH HOH . O 7 HOH A 15 515 62 HOH HOH . O 7 HOH A 16 516 20 HOH HOH . O 7 HOH A 17 517 83 HOH HOH . O 7 HOH A 18 518 8 HOH HOH . O 7 HOH A 19 519 17 HOH HOH . O 7 HOH A 20 520 25 HOH HOH . O 7 HOH A 21 521 41 HOH HOH . O 7 HOH A 22 522 63 HOH HOH . O 7 HOH A 23 523 78 HOH HOH . O 7 HOH A 24 524 1 HOH HOH . O 7 HOH A 25 525 6 HOH HOH . O 7 HOH A 26 526 40 HOH HOH . O 7 HOH A 27 527 82 HOH HOH . O 7 HOH A 28 528 26 HOH HOH . O 7 HOH A 29 529 5 HOH HOH . O 7 HOH A 30 530 31 HOH HOH . O 7 HOH A 31 531 46 HOH HOH . O 7 HOH A 32 532 53 HOH HOH . O 7 HOH A 33 533 80 HOH HOH . O 7 HOH A 34 534 13 HOH HOH . O 7 HOH A 35 535 43 HOH HOH . O 7 HOH A 36 536 38 HOH HOH . O 7 HOH A 37 537 54 HOH HOH . O 7 HOH A 38 538 49 HOH HOH . O 7 HOH A 39 539 47 HOH HOH . O 7 HOH A 40 540 56 HOH HOH . O 7 HOH A 41 541 32 HOH HOH . O 7 HOH A 42 542 35 HOH HOH . O 7 HOH A 43 543 22 HOH HOH . O 7 HOH A 44 544 74 HOH HOH . O 7 HOH A 45 545 23 HOH HOH . O 7 HOH A 46 546 3 HOH HOH . O 7 HOH A 47 547 60 HOH HOH . O 7 HOH A 48 548 85 HOH HOH . O 7 HOH A 49 549 24 HOH HOH . O 7 HOH A 50 550 52 HOH HOH . O 7 HOH A 51 551 64 HOH HOH . O 7 HOH A 52 552 58 HOH HOH . O 7 HOH A 53 553 57 HOH HOH . O 7 HOH A 54 554 44 HOH HOH . O 7 HOH A 55 555 88 HOH HOH . O 7 HOH A 56 556 30 HOH HOH . O 7 HOH A 57 557 29 HOH HOH . O 7 HOH A 58 558 21 HOH HOH . O 7 HOH A 59 559 7 HOH HOH . O 7 HOH A 60 560 50 HOH HOH . O 7 HOH A 61 561 15 HOH HOH . O 7 HOH A 62 562 39 HOH HOH . O 7 HOH A 63 563 59 HOH HOH . O 7 HOH A 64 564 84 HOH HOH . O 7 HOH A 65 565 27 HOH HOH . O 7 HOH A 66 566 14 HOH HOH . O 7 HOH A 67 567 10 HOH HOH . O 7 HOH A 68 568 9 HOH HOH . O 7 HOH A 69 569 71 HOH HOH . O 7 HOH A 70 570 89 HOH HOH . O 7 HOH A 71 571 2 HOH HOH . O 7 HOH A 72 572 4 HOH HOH . O 7 HOH A 73 573 68 HOH HOH . O 7 HOH A 74 574 65 HOH HOH . O 7 HOH A 75 575 81 HOH HOH . O 7 HOH A 76 576 48 HOH HOH . O 7 HOH A 77 577 69 HOH HOH . O 7 HOH A 78 578 16 HOH HOH . O 7 HOH A 79 579 66 HOH HOH . O 7 HOH A 80 580 37 HOH HOH . O 7 HOH A 81 581 18 HOH HOH . O 7 HOH A 82 582 12 HOH HOH . O 7 HOH A 83 583 11 HOH HOH . O 7 HOH A 84 584 72 HOH HOH . O 7 HOH A 85 585 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . M 6 35.159 27.656 3.644 1 93.83 ? C1 GOL 412 A 1 HETATM 2 O O1 GOL . . . M 6 35.686 28.574 2.734 1 84.67 ? O1 GOL 412 A 1 HETATM 3 C C2 GOL . . . M 6 35.894 26.309 3.411 1 93.58 ? C2 GOL 412 A 1 HETATM 4 O O2 GOL . . . M 6 37.238 26.39 3.732 1 103.34 ? O2 GOL 412 A 1 HETATM 5 C C3 GOL . . . M 6 35.158 25.284 4.303 1 92.47 ? C3 GOL 412 A 1 HETATM 6 O O3 GOL . . . M 6 35.572 25.528 5.612 1 92.44 ? O3 GOL 412 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #