data_8UVC # _model_server_result.job_id 8t_zH6R5yNaQEnLHr_OLdQ _model_server_result.datetime_utc '2025-01-05 22:20:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8uvc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":702}' # _entry.id 8UVC # _exptl.entry_id 8UVC _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 146.098 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-OXOGLUTARIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UVC _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UVC _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 139 A SER 139 1_555 C NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc2 A OG SER 139 A SER 139 1_555 C NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc3 A O LEU 142 A LEU 142 1_555 C NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc4 A OD1 ASN 144 A ASN 144 1_555 C NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc5 A O GLY 252 A GLY 252 1_555 C NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc6 B O SER 139 B SER 139 1_555 O NA NA . B NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc7 B OG SER 139 B SER 139 1_555 O NA NA . B NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc8 B O LEU 142 B LEU 142 1_555 O NA NA . B NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc9 B OD1 ASN 144 B ASN 144 1_555 O NA NA . B NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc10 B O GLY 252 B GLY 252 1_555 O NA NA . B NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? # _chem_comp.formula 'C5 H6 O5' _chem_comp.formula_weight 146.098 _chem_comp.id AKG _chem_comp.mon_nstd_flag . _chem_comp.name '2-OXOGLUTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 AKG doub 133 n n C1 O2 AKG sing 134 n n C1 C2 AKG sing 135 n n O2 HO2 AKG sing 136 n n C2 O5 AKG doub 137 n n C2 C3 AKG sing 138 n n C3 C4 AKG sing 139 n n C3 H31 AKG sing 140 n n C3 H32 AKG sing 141 n n C4 C5 AKG sing 142 n n C4 H41 AKG sing 143 n n C4 H42 AKG sing 144 n n C5 O3 AKG doub 145 n n C5 O4 AKG sing 146 n n O4 HO4 AKG sing 147 n n # _atom_sites.entry_id 8UVC _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 701 603 NA NA . D 3 AKG A 1 702 605 AKG LIG . E 4 C14 A 1 703 607 C14 C14 . F 4 C14 A 1 704 608 C14 C14 . G 5 3PE A 1 705 609 3PE 3PE . H 6 CLR A 1 706 610 CLR CLR . I 6 CLR A 1 707 611 CLR CLR . J 6 CLR A 1 708 614 CLR CLR . K 5 3PE A 1 709 616 3PE 3PE . L 6 CLR A 1 710 617 CLR CLR . M 4 C14 A 1 711 618 C14 C14 . N 4 C14 A 1 712 608 C14 C14 . O 2 NA B 1 701 603 NA NA . P 3 AKG B 1 702 605 AKG LIG . Q 4 C14 B 1 703 607 C14 C14 . R 5 3PE B 1 704 609 3PE 3PE . S 6 CLR B 1 705 610 CLR CLR . T 6 CLR B 1 706 611 CLR CLR . U 6 CLR B 1 707 614 CLR CLR . V 5 3PE B 1 708 616 3PE 3PE . W 6 CLR B 1 709 617 CLR CLR . X 4 C14 B 1 710 618 C14 C14 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AKG . A . P 3 104.692 88.316 110.194 0.5 61.4 ? C1 AKG 702 B 1 HETATM 2 C C1 AKG . B . P 3 100.828 91.077 110.625 0.5 61.4 ? C1 AKG 702 B 1 HETATM 3 O O1 AKG . A . P 3 105.652 88.874 109.607 0.5 61.4 ? O1 AKG 702 B 1 HETATM 4 O O1 AKG . B . P 3 99.588 90.909 110.734 0.5 61.4 ? O1 AKG 702 B 1 HETATM 5 O O2 AKG . A . P 3 104.762 87.27 110.866 0.5 61.4 ? O2 AKG 702 B 1 HETATM 6 O O2 AKG . B . P 3 101.386 91.849 109.822 0.5 61.4 ? O2 AKG 702 B 1 HETATM 7 C C2 AKG . A . P 3 103.32 88.997 110.066 0.5 61.4 ? C2 AKG 702 B 1 HETATM 8 C C2 AKG . B . P 3 101.72 90.25 111.57 0.5 61.4 ? C2 AKG 702 B 1 HETATM 9 O O5 AKG . A . P 3 102.991 89.5 109.002 0.5 61.4 ? O5 AKG 702 B 1 HETATM 10 O O5 AKG . B . P 3 101.886 90.62 112.723 0.5 61.4 ? O5 AKG 702 B 1 HETATM 11 C C3 AKG . A . P 3 102.394 89.02 111.267 0.5 61.4 ? C3 AKG 702 B 1 HETATM 12 C C3 AKG . B . P 3 102.383 88.991 111.05 0.5 61.4 ? C3 AKG 702 B 1 HETATM 13 C C4 AKG . A . P 3 101.969 90.423 111.683 0.5 61.4 ? C4 AKG 702 B 1 HETATM 14 C C4 AKG . B . P 3 103.301 89.24 109.863 0.5 61.4 ? C4 AKG 702 B 1 HETATM 15 C C5 AKG . A . P 3 100.925 91.043 110.731 0.5 61.4 ? C5 AKG 702 B 1 HETATM 16 C C5 AKG . B . P 3 104.637 88.485 109.976 0.5 61.4 ? C5 AKG 702 B 1 HETATM 17 O O3 AKG . A . P 3 101.338 91.703 109.742 0.5 61.4 ? O3 AKG 702 B 1 HETATM 18 O O3 AKG . B . P 3 105.548 88.76 109.153 0.5 61.4 ? O3 AKG 702 B 1 HETATM 19 O O4 AKG . A . P 3 99.705 90.869 110.983 0.5 61.4 ? O4 AKG 702 B 1 HETATM 20 O O4 AKG . B . P 3 104.767 87.628 110.888 0.5 61.4 ? O4 AKG 702 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 20 #