data_8UVG # _model_server_result.job_id yHdeC_Z7dZ76M2d4QyOM8A _model_server_result.datetime_utc '2025-01-07 12:05:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8uvg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 8UVG # _exptl.entry_id 8UVG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 146.141 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R,3S)-2,3-dimethylbutanedioic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UVG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UVG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O SER 139 A SER 139 1_555 M NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.077 ? metalc ? metalc2 B O LEU 142 A LEU 142 1_555 M NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc3 B OD1 ASN 144 A ASN 144 1_555 M NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc4 B O GLY 252 A GLY 252 1_555 M NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc5 B O THR 479 A THR 479 1_555 N NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc6 B OG1 THR 479 A THR 479 1_555 N NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc7 B O ALA 482 A ALA 482 1_555 N NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc8 B OD1 ASN 484 A ASN 484 1_555 N NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc9 B O SER 526 A SER 526 1_555 N NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? # _chem_comp.formula 'C6 H10 O4' _chem_comp.formula_weight 146.141 _chem_comp.id XKH _chem_comp.mon_nstd_flag . _chem_comp.name '(2R,3S)-2,3-dimethylbutanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O06 C04 XKH doub 626 n n C08 C07 XKH sing 627 n n C04 O05 XKH sing 628 n n C04 C09 XKH sing 629 n n C07 C09 XKH sing 630 n n C07 C02 XKH sing 631 n n C09 C10 XKH sing 632 n n O01 C02 XKH doub 633 n n C02 O03 XKH sing 634 n n C10 H1 XKH sing 635 n n C10 H2 XKH sing 636 n n C10 H3 XKH sing 637 n n C07 H4 XKH sing 638 n n C08 H5 XKH sing 639 n n C08 H6 XKH sing 640 n n C08 H7 XKH sing 641 n n C09 H8 XKH sing 642 n n O03 H9 XKH sing 643 n n O05 H10 XKH sing 644 n n # _atom_sites.entry_id 8UVG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 XKH B 1 701 606 XKH LIG . D 3 C14 B 1 702 607 C14 C14 . E 3 C14 B 1 703 608 C14 C14 . F 4 CLR B 1 704 610 CLR CLR . G 4 CLR B 1 705 611 CLR CLR . H 4 CLR B 1 706 612 CLR CLR . I 3 C14 B 1 707 613 C14 C14 . J 4 CLR B 1 708 614 CLR CLR . K 4 CLR B 1 709 617 CLR CLR . L 3 C14 B 1 710 618 C14 C14 . M 5 NA A 1 701 603 NA NA . N 5 NA A 1 702 604 NA NA . O 3 C14 A 1 703 607 C14 C14 . P 3 C14 A 1 704 608 C14 C14 . Q 6 3PE A 1 705 609 3PE 3PE . R 4 CLR A 1 706 610 CLR CLR . S 4 CLR A 1 707 611 CLR CLR . T 4 CLR A 1 708 614 CLR CLR . U 6 3PE A 1 709 616 3PE 3PE . V 4 CLR A 1 710 617 CLR CLR . W 3 C14 A 1 711 618 C14 C14 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 XKH . . . C 2 99.306 89.85 96.18 1 88.02 ? C10 XKH 701 B 1 HETATM 2 C C02 XKH . . . C 2 95.484 90.513 96.556 1 88.02 ? C02 XKH 701 B 1 HETATM 3 C C04 XKH . . . C 2 97.302 89.081 94.907 1 88.02 ? C04 XKH 701 B 1 HETATM 4 C C07 XKH . . . C 2 96.998 90.672 96.916 1 88.02 ? C07 XKH 701 B 1 HETATM 5 C C08 XKH . . . C 2 97.339 89.865 98.176 1 88.02 ? C08 XKH 701 B 1 HETATM 6 C C09 XKH . . . C 2 97.903 90.271 95.722 1 88.02 ? C09 XKH 701 B 1 HETATM 7 O O01 XKH . . . C 2 95.003 91.121 95.568 1 88.02 ? O01 XKH 701 B 1 HETATM 8 O O03 XKH . . . C 2 94.773 89.764 97.285 1 88.02 ? O03 XKH 701 B 1 HETATM 9 O O05 XKH . . . C 2 97.052 87.99 95.479 1 88.02 ? O05 XKH 701 B 1 HETATM 10 O O06 XKH . . . C 2 97.08 89.247 93.676 1 88.02 ? O06 XKH 701 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #