data_8UVM # _model_server_result.job_id vfYrdN56tXDWZqDSXh4zcA _model_server_result.datetime_utc '2024-11-23 09:35:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8uvm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":405}' # _entry.id 8UVM # _exptl.entry_id 8UVM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8UVM _cell.length_a 190.997 _cell.length_b 190.997 _cell.length_c 112.926 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UVM _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall 'P 3 2"' _symmetry.space_group_name_H-M 'P 3 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,V 1 1 B,I,J,K,L,W 2 1 C,M,N,O,P,X 3 1 D,Q,R,S,T,U,Y 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 L N N ? 5 P N N ? 5 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 114 A CYS 111 1_555 E C25 Y3R . A Y3R 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale2 B SG CYS 114 B CYS 111 1_555 I C25 Y3R . B Y3R 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale3 C SG CYS 114 C CYS 111 1_555 M C25 Y3R . C Y3R 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale4 D SG CYS 114 D CYS 111 1_555 Q C25 Y3R . D Y3R 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? metalc ? metalc1 A SG CYS 192 A CYS 189 1_555 H ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc2 A SG CYS 195 A CYS 192 1_555 H ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc3 A SG CYS 227 A CYS 224 1_555 H ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc4 A SG CYS 229 A CYS 226 1_555 H ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc5 B SG CYS 192 B CYS 189 1_555 L ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc6 B SG CYS 195 B CYS 192 1_555 L ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc7 B SG CYS 227 B CYS 224 1_555 L ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc8 B SG CYS 229 B CYS 226 1_555 L ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc9 C SG CYS 192 C CYS 189 1_555 P ZN ZN . C ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc10 C SG CYS 227 C CYS 224 1_555 P ZN ZN . C ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc11 C SG CYS 229 C CYS 226 1_555 P ZN ZN . C ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc12 D SG CYS 192 D CYS 189 1_555 U ZN ZN . D ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc13 D SG CYS 195 D CYS 192 1_555 U ZN ZN . D ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc14 D SG CYS 227 D CYS 224 1_555 U ZN ZN . D ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc15 D SG CYS 229 D CYS 226 1_555 U ZN ZN . D ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc16 U ZN ZN . D ZN 405 1_555 Y O HOH . D HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8UVM _atom_sites.fract_transf_matrix[1][1] 0.005236 _atom_sites.fract_transf_matrix[1][2] 0.003023 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006046 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 Y3R A 1 401 401 Y3R LIG . F 3 SO4 A 1 402 1 SO4 SO4 . G 4 CL A 1 403 1 CL CL . H 5 ZN A 1 404 3 ZN ZN . I 2 Y3R B 1 401 401 Y3R LIG . J 3 SO4 B 1 402 2 SO4 SO4 . K 4 CL B 1 403 2 CL CL . L 5 ZN B 1 404 2 ZN ZN . M 2 Y3R C 1 401 401 Y3R LIG . N 3 SO4 C 1 402 3 SO4 SO4 . O 4 CL C 1 403 3 CL CL . P 5 ZN C 1 404 5 ZN ZN . Q 2 Y3R D 1 401 401 Y3R LIG . R 3 SO4 D 1 402 4 SO4 SO4 . S 4 CL D 1 403 5 CL CL . T 4 CL D 1 404 6 CL CL . U 5 ZN D 1 405 4 ZN ZN . V 6 HOH A 1 501 98 HOH HOH . V 6 HOH A 2 502 148 HOH HOH . V 6 HOH A 3 503 108 HOH HOH . V 6 HOH A 4 504 69 HOH HOH . V 6 HOH A 5 505 218 HOH HOH . V 6 HOH A 6 506 81 HOH HOH . V 6 HOH A 7 507 124 HOH HOH . V 6 HOH A 8 508 144 HOH HOH . V 6 HOH A 9 509 166 HOH HOH . V 6 HOH A 10 510 10 HOH HOH . V 6 HOH A 11 511 100 HOH HOH . V 6 HOH A 12 512 167 HOH HOH . V 6 HOH A 13 513 156 HOH HOH . V 6 HOH A 14 514 131 HOH HOH . V 6 HOH A 15 515 67 HOH HOH . V 6 HOH A 16 516 224 HOH HOH . V 6 HOH A 17 517 217 HOH HOH . V 6 HOH A 18 518 23 HOH HOH . V 6 HOH A 19 519 45 HOH HOH . V 6 HOH A 20 520 205 HOH HOH . V 6 HOH A 21 521 121 HOH HOH . V 6 HOH A 22 522 230 HOH HOH . V 6 HOH A 23 523 232 HOH HOH . V 6 HOH A 24 524 118 HOH HOH . V 6 HOH A 25 525 9 HOH HOH . V 6 HOH A 26 526 197 HOH HOH . V 6 HOH A 27 527 226 HOH HOH . V 6 HOH A 28 528 50 HOH HOH . V 6 HOH A 29 529 35 HOH HOH . V 6 HOH A 30 530 52 HOH HOH . V 6 HOH A 31 531 123 HOH HOH . V 6 HOH A 32 532 46 HOH HOH . V 6 HOH A 33 533 95 HOH HOH . V 6 HOH A 34 534 203 HOH HOH . V 6 HOH A 35 535 47 HOH HOH . V 6 HOH A 36 536 71 HOH HOH . V 6 HOH A 37 537 70 HOH HOH . V 6 HOH A 38 538 141 HOH HOH . V 6 HOH A 39 539 49 HOH HOH . V 6 HOH A 40 540 129 HOH HOH . V 6 HOH A 41 541 97 HOH HOH . V 6 HOH A 42 542 22 HOH HOH . V 6 HOH A 43 543 119 HOH HOH . V 6 HOH A 44 544 25 HOH HOH . V 6 HOH A 45 545 204 HOH HOH . V 6 HOH A 46 546 96 HOH HOH . V 6 HOH A 47 547 111 HOH HOH . V 6 HOH A 48 548 142 HOH HOH . V 6 HOH A 49 549 99 HOH HOH . V 6 HOH A 50 550 78 HOH HOH . V 6 HOH A 51 551 109 HOH HOH . V 6 HOH A 52 552 16 HOH HOH . V 6 HOH A 53 553 143 HOH HOH . V 6 HOH A 54 554 24 HOH HOH . W 6 HOH B 1 501 165 HOH HOH . W 6 HOH B 2 502 146 HOH HOH . W 6 HOH B 3 503 114 HOH HOH . W 6 HOH B 4 504 138 HOH HOH . W 6 HOH B 5 505 11 HOH HOH . W 6 HOH B 6 506 164 HOH HOH . W 6 HOH B 7 507 43 HOH HOH . W 6 HOH B 8 508 137 HOH HOH . W 6 HOH B 9 509 75 HOH HOH . W 6 HOH B 10 510 48 HOH HOH . W 6 HOH B 11 511 40 HOH HOH . W 6 HOH B 12 512 145 HOH HOH . W 6 HOH B 13 513 56 HOH HOH . W 6 HOH B 14 514 53 HOH HOH . W 6 HOH B 15 515 212 HOH HOH . W 6 HOH B 16 516 41 HOH HOH . W 6 HOH B 17 517 128 HOH HOH . W 6 HOH B 18 518 184 HOH HOH . W 6 HOH B 19 519 225 HOH HOH . W 6 HOH B 20 520 180 HOH HOH . W 6 HOH B 21 521 26 HOH HOH . W 6 HOH B 22 522 3 HOH HOH . W 6 HOH B 23 523 233 HOH HOH . W 6 HOH B 24 524 127 HOH HOH . W 6 HOH B 25 525 140 HOH HOH . W 6 HOH B 26 526 102 HOH HOH . W 6 HOH B 27 527 223 HOH HOH . W 6 HOH B 28 528 219 HOH HOH . W 6 HOH B 29 529 188 HOH HOH . W 6 HOH B 30 530 191 HOH HOH . W 6 HOH B 31 531 73 HOH HOH . W 6 HOH B 32 532 74 HOH HOH . W 6 HOH B 33 533 55 HOH HOH . W 6 HOH B 34 534 112 HOH HOH . W 6 HOH B 35 535 178 HOH HOH . W 6 HOH B 36 536 29 HOH HOH . W 6 HOH B 37 537 182 HOH HOH . W 6 HOH B 38 538 54 HOH HOH . W 6 HOH B 39 539 139 HOH HOH . W 6 HOH B 40 540 181 HOH HOH . W 6 HOH B 41 541 179 HOH HOH . X 6 HOH C 1 501 163 HOH HOH . X 6 HOH C 2 502 155 HOH HOH . X 6 HOH C 3 503 161 HOH HOH . X 6 HOH C 4 504 130 HOH HOH . X 6 HOH C 5 505 170 HOH HOH . X 6 HOH C 6 506 21 HOH HOH . X 6 HOH C 7 507 79 HOH HOH . X 6 HOH C 8 508 177 HOH HOH . X 6 HOH C 9 509 208 HOH HOH . X 6 HOH C 10 510 160 HOH HOH . X 6 HOH C 11 511 220 HOH HOH . X 6 HOH C 12 512 168 HOH HOH . X 6 HOH C 13 513 4 HOH HOH . X 6 HOH C 14 514 216 HOH HOH . X 6 HOH C 15 515 28 HOH HOH . X 6 HOH C 16 516 169 HOH HOH . X 6 HOH C 17 517 77 HOH HOH . X 6 HOH C 18 518 13 HOH HOH . X 6 HOH C 19 519 80 HOH HOH . X 6 HOH C 20 520 8 HOH HOH . X 6 HOH C 21 521 1 HOH HOH . X 6 HOH C 22 522 82 HOH HOH . X 6 HOH C 23 523 198 HOH HOH . X 6 HOH C 24 524 187 HOH HOH . X 6 HOH C 25 525 85 HOH HOH . X 6 HOH C 26 526 18 HOH HOH . X 6 HOH C 27 527 57 HOH HOH . X 6 HOH C 28 528 66 HOH HOH . X 6 HOH C 29 529 76 HOH HOH . X 6 HOH C 30 530 125 HOH HOH . X 6 HOH C 31 531 12 HOH HOH . X 6 HOH C 32 532 214 HOH HOH . X 6 HOH C 33 533 176 HOH HOH . X 6 HOH C 34 534 185 HOH HOH . X 6 HOH C 35 535 27 HOH HOH . X 6 HOH C 36 536 231 HOH HOH . X 6 HOH C 37 537 183 HOH HOH . X 6 HOH C 38 538 105 HOH HOH . X 6 HOH C 39 539 211 HOH HOH . X 6 HOH C 40 540 14 HOH HOH . X 6 HOH C 41 541 32 HOH HOH . X 6 HOH C 42 542 33 HOH HOH . X 6 HOH C 43 543 134 HOH HOH . X 6 HOH C 44 544 193 HOH HOH . X 6 HOH C 45 545 84 HOH HOH . X 6 HOH C 46 546 113 HOH HOH . X 6 HOH C 47 547 83 HOH HOH . X 6 HOH C 48 548 6 HOH HOH . X 6 HOH C 49 549 60 HOH HOH . X 6 HOH C 50 550 59 HOH HOH . X 6 HOH C 51 551 5 HOH HOH . X 6 HOH C 52 552 192 HOH HOH . X 6 HOH C 53 553 2 HOH HOH . X 6 HOH C 54 554 135 HOH HOH . X 6 HOH C 55 555 44 HOH HOH . Y 6 HOH D 1 501 86 HOH HOH . Y 6 HOH D 2 502 94 HOH HOH . Y 6 HOH D 3 503 104 HOH HOH . Y 6 HOH D 4 504 88 HOH HOH . Y 6 HOH D 5 505 90 HOH HOH . Y 6 HOH D 6 506 36 HOH HOH . Y 6 HOH D 7 507 20 HOH HOH . Y 6 HOH D 8 508 229 HOH HOH . Y 6 HOH D 9 509 89 HOH HOH . Y 6 HOH D 10 510 227 HOH HOH . Y 6 HOH D 11 511 117 HOH HOH . Y 6 HOH D 12 512 93 HOH HOH . Y 6 HOH D 13 513 65 HOH HOH . Y 6 HOH D 14 514 91 HOH HOH . Y 6 HOH D 15 515 228 HOH HOH . Y 6 HOH D 16 516 207 HOH HOH . Y 6 HOH D 17 517 190 HOH HOH . Y 6 HOH D 18 518 213 HOH HOH . Y 6 HOH D 19 519 149 HOH HOH . Y 6 HOH D 20 520 62 HOH HOH . Y 6 HOH D 21 521 87 HOH HOH . Y 6 HOH D 22 522 38 HOH HOH . Y 6 HOH D 23 523 206 HOH HOH . Y 6 HOH D 24 524 92 HOH HOH . Y 6 HOH D 25 525 152 HOH HOH . Y 6 HOH D 26 526 64 HOH HOH . Y 6 HOH D 27 527 195 HOH HOH . Y 6 HOH D 28 528 209 HOH HOH . Y 6 HOH D 29 529 173 HOH HOH . Y 6 HOH D 30 530 186 HOH HOH . Y 6 HOH D 31 531 153 HOH HOH . Y 6 HOH D 32 532 110 HOH HOH . Y 6 HOH D 33 533 200 HOH HOH . Y 6 HOH D 34 534 172 HOH HOH . Y 6 HOH D 35 535 63 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id U _atom_site.label_entity_id 5 _atom_site.Cartn_x 14.648 _atom_site.Cartn_y -89.924 _atom_site.Cartn_z 81.039 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 143.81 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 405 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #