data_8UVY # _model_server_result.job_id 6dAT-F2geyhfPQIQ32UOcA _model_server_result.datetime_utc '2024-10-18 02:20:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8uvy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 8UVY # _exptl.entry_id 8UVY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UVY _cell.length_a 75.836 _cell.length_b 87.378 _cell.length_c 197.425 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UVY _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 22 B CYS 22 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? covale ? covale1 A NZ LYS 16 A LYS 17 1_555 D C25 XOO . A XOO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? metalc ? metalc1 A NZ LYS 16 A LYS 17 1_555 K ZN ZN . A ZN 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc2 A SG CYS 288 A CYS 296 1_555 K ZN ZN . A ZN 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc3 A SG CYS 302 A CYS 310 1_555 K ZN ZN . A ZN 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc4 D O2 XOO . A XOO 502 1_555 K ZN ZN . A ZN 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.839 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8UVY _atom_sites.fract_transf_matrix[1][1] 0.013186 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011445 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005065 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO A 1 501 503 EDO EDO . D 4 XOO A 1 502 504 XOO 286 . E 5 SO4 A 1 503 2 SO4 SO4 . F 5 SO4 A 1 504 3 SO4 SO4 . G 5 SO4 A 1 505 4 SO4 SO4 . H 5 SO4 A 1 506 5 SO4 SO4 . I 5 SO4 A 1 507 6 SO4 SO4 . J 5 SO4 A 1 508 7 SO4 SO4 . K 6 ZN A 1 509 1 ZN ZN . L 7 HOH A 1 601 32 HOH HOH . L 7 HOH A 2 602 12 HOH HOH . L 7 HOH A 3 603 44 HOH HOH . L 7 HOH A 4 604 16 HOH HOH . L 7 HOH A 5 605 1 HOH HOH . L 7 HOH A 6 606 59 HOH HOH . L 7 HOH A 7 607 41 HOH HOH . L 7 HOH A 8 608 85 HOH HOH . L 7 HOH A 9 609 68 HOH HOH . L 7 HOH A 10 610 3 HOH HOH . L 7 HOH A 11 611 88 HOH HOH . L 7 HOH A 12 612 91 HOH HOH . L 7 HOH A 13 613 37 HOH HOH . L 7 HOH A 14 614 93 HOH HOH . L 7 HOH A 15 615 17 HOH HOH . L 7 HOH A 16 616 11 HOH HOH . L 7 HOH A 17 617 8 HOH HOH . L 7 HOH A 18 618 9 HOH HOH . L 7 HOH A 19 619 69 HOH HOH . L 7 HOH A 20 620 33 HOH HOH . L 7 HOH A 21 621 64 HOH HOH . L 7 HOH A 22 622 7 HOH HOH . L 7 HOH A 23 623 38 HOH HOH . L 7 HOH A 24 624 14 HOH HOH . L 7 HOH A 25 625 45 HOH HOH . L 7 HOH A 26 626 30 HOH HOH . L 7 HOH A 27 627 36 HOH HOH . L 7 HOH A 28 628 6 HOH HOH . L 7 HOH A 29 629 35 HOH HOH . L 7 HOH A 30 630 31 HOH HOH . L 7 HOH A 31 631 42 HOH HOH . L 7 HOH A 32 632 70 HOH HOH . L 7 HOH A 33 633 5 HOH HOH . L 7 HOH A 34 634 21 HOH HOH . L 7 HOH A 35 635 24 HOH HOH . L 7 HOH A 36 636 19 HOH HOH . L 7 HOH A 37 637 51 HOH HOH . L 7 HOH A 38 638 4 HOH HOH . L 7 HOH A 39 639 60 HOH HOH . L 7 HOH A 40 640 39 HOH HOH . L 7 HOH A 41 641 48 HOH HOH . L 7 HOH A 42 642 81 HOH HOH . L 7 HOH A 43 643 15 HOH HOH . L 7 HOH A 44 644 49 HOH HOH . L 7 HOH A 45 645 2 HOH HOH . L 7 HOH A 46 646 54 HOH HOH . L 7 HOH A 47 647 63 HOH HOH . L 7 HOH A 48 648 77 HOH HOH . L 7 HOH A 49 649 40 HOH HOH . L 7 HOH A 50 650 10 HOH HOH . L 7 HOH A 51 651 58 HOH HOH . L 7 HOH A 52 652 28 HOH HOH . L 7 HOH A 53 653 46 HOH HOH . L 7 HOH A 54 654 34 HOH HOH . L 7 HOH A 55 655 47 HOH HOH . L 7 HOH A 56 656 56 HOH HOH . L 7 HOH A 57 657 55 HOH HOH . L 7 HOH A 58 658 20 HOH HOH . L 7 HOH A 59 659 80 HOH HOH . L 7 HOH A 60 660 66 HOH HOH . L 7 HOH A 61 661 61 HOH HOH . L 7 HOH A 62 662 75 HOH HOH . L 7 HOH A 63 663 87 HOH HOH . L 7 HOH A 64 664 72 HOH HOH . L 7 HOH A 65 665 83 HOH HOH . L 7 HOH A 66 666 62 HOH HOH . L 7 HOH A 67 667 43 HOH HOH . L 7 HOH A 68 668 92 HOH HOH . L 7 HOH A 69 669 67 HOH HOH . L 7 HOH A 70 670 78 HOH HOH . L 7 HOH A 71 671 94 HOH HOH . L 7 HOH A 72 672 25 HOH HOH . L 7 HOH A 73 673 71 HOH HOH . L 7 HOH A 74 674 89 HOH HOH . L 7 HOH A 75 675 96 HOH HOH . L 7 HOH A 76 676 90 HOH HOH . L 7 HOH A 77 677 53 HOH HOH . M 7 HOH B 1 201 18 HOH HOH . M 7 HOH B 2 202 27 HOH HOH . M 7 HOH B 3 203 65 HOH HOH . M 7 HOH B 4 204 52 HOH HOH . M 7 HOH B 5 205 76 HOH HOH . M 7 HOH B 6 206 13 HOH HOH . M 7 HOH B 7 207 23 HOH HOH . M 7 HOH B 8 208 84 HOH HOH . M 7 HOH B 9 209 74 HOH HOH . M 7 HOH B 10 210 57 HOH HOH . M 7 HOH B 11 211 82 HOH HOH . M 7 HOH B 12 212 79 HOH HOH . M 7 HOH B 13 213 50 HOH HOH . M 7 HOH B 14 214 29 HOH HOH . M 7 HOH B 15 215 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 1.638 20.21 -45.765 1 45.35 ? C1 EDO 501 A 1 HETATM 2 O O1 EDO . . . C 3 1.778 21.604 -46.09 1 52.13 ? O1 EDO 501 A 1 HETATM 3 C C2 EDO . . . C 3 0.666 19.531 -46.725 1 52.76 ? C2 EDO 501 A 1 HETATM 4 O O2 EDO . . . C 3 1.167 18.223 -47.027 1 54.55 ? O2 EDO 501 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 4 #