data_8UVY # _model_server_result.job_id YKlqDtd7ymUFU-YnAbR96g _model_server_result.datetime_utc '2024-10-18 02:34:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8uvy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 8UVY # _exptl.entry_id 8UVY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 540.614 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-{2-[({4-[(2P)-2-(2-aminopyridin-3-yl)-5-phenyl-3H-imidazo[4,5-b]pyridin-3-yl]phenyl}methyl)amino]ethyl}-2-hydroxybenzaldehyde _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UVY _cell.length_a 75.836 _cell.length_b 87.378 _cell.length_c 197.425 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UVY _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 22 B CYS 22 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? covale ? covale1 A NZ LYS 16 A LYS 17 1_555 D C25 XOO . A XOO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? metalc ? metalc1 A NZ LYS 16 A LYS 17 1_555 K ZN ZN . A ZN 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc2 A SG CYS 288 A CYS 296 1_555 K ZN ZN . A ZN 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc3 A SG CYS 302 A CYS 310 1_555 K ZN ZN . A ZN 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc4 D O2 XOO . A XOO 502 1_555 K ZN ZN . A ZN 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.839 ? # _chem_comp.formula 'C33 H28 N6 O2' _chem_comp.formula_weight 540.614 _chem_comp.id XOO _chem_comp.mon_nstd_flag . _chem_comp.name 4-{2-[({4-[(2P)-2-(2-aminopyridin-3-yl)-5-phenyl-3H-imidazo[4,5-b]pyridin-3-yl]phenyl}methyl)amino]ethyl}-2-hydroxybenzaldehyde _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 XOO sing 389 n n C1 N2 XOO doub 390 n y C1 C5 XOO sing 391 n y N2 C2 XOO sing 392 n y C2 C3 XOO doub 393 n y C3 C4 XOO sing 394 n y C4 C5 XOO doub 395 n y C5 C6 XOO sing 396 n n C6 N3 XOO doub 397 n y C6 N5 XOO sing 398 n y N3 C7 XOO sing 399 n y C7 C8 XOO doub 400 n y C7 C11 XOO sing 401 n y C8 C9 XOO sing 402 n y C9 C10 XOO doub 403 n y C10 N4 XOO sing 404 n y C10 C28 XOO sing 405 n n N4 C11 XOO doub 406 n y C11 N5 XOO sing 407 n y N5 C12 XOO sing 408 n n C12 C13 XOO doub 409 n y C12 C17 XOO sing 410 n y C13 C14 XOO sing 411 n y C14 C15 XOO doub 412 n y C15 C16 XOO sing 413 n y C15 C18 XOO sing 414 n n C16 C17 XOO doub 415 n y C18 N6 XOO sing 416 n n N6 C19 XOO sing 417 n n C19 C20 XOO sing 418 n n C20 C21 XOO sing 419 n n C21 C22 XOO doub 420 n y C21 C27 XOO sing 421 n y C22 C23 XOO sing 422 n y C23 C24 XOO doub 423 n y C24 C25 XOO sing 424 n n C24 C26 XOO sing 425 n y C26 O2 XOO sing 426 n n C26 C27 XOO doub 427 n y C28 C29 XOO doub 428 n y C28 C33 XOO sing 429 n y C29 C30 XOO sing 430 n y C30 C31 XOO doub 431 n y C31 C32 XOO sing 432 n y C32 C33 XOO doub 433 n y N1 H1 XOO sing 434 n n N1 H2 XOO sing 435 n n C2 H3 XOO sing 436 n n C3 H4 XOO sing 437 n n C22 H19 XOO sing 438 n n C4 H5 XOO sing 439 n n C13 H8 XOO sing 440 n n C14 H9 XOO sing 441 n n C16 H10 XOO sing 442 n n C17 H11 XOO sing 443 n n C18 H12 XOO sing 444 n n C18 H13 XOO sing 445 n n C19 H15 XOO sing 446 n n C19 H16 XOO sing 447 n n C20 H18 XOO sing 448 n n C20 H17 XOO sing 449 n n C23 H20 XOO sing 450 n n C25 H21 XOO sing 451 n n C27 H23 XOO sing 452 n n C29 H24 XOO sing 453 n n C30 H25 XOO sing 454 n n C31 H26 XOO sing 455 n n C32 H27 XOO sing 456 n n C33 H28 XOO sing 457 n n C8 H6 XOO sing 458 n n C9 H7 XOO sing 459 n n N6 H14 XOO sing 460 n n O2 H22 XOO sing 461 n n C25 O1 XOO doub 462 n n # _atom_sites.entry_id 8UVY _atom_sites.fract_transf_matrix[1][1] 0.013186 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011445 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005065 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO A 1 501 503 EDO EDO . D 4 XOO A 1 502 504 XOO 286 . E 5 SO4 A 1 503 2 SO4 SO4 . F 5 SO4 A 1 504 3 SO4 SO4 . G 5 SO4 A 1 505 4 SO4 SO4 . H 5 SO4 A 1 506 5 SO4 SO4 . I 5 SO4 A 1 507 6 SO4 SO4 . J 5 SO4 A 1 508 7 SO4 SO4 . K 6 ZN A 1 509 1 ZN ZN . L 7 HOH A 1 601 32 HOH HOH . L 7 HOH A 2 602 12 HOH HOH . L 7 HOH A 3 603 44 HOH HOH . L 7 HOH A 4 604 16 HOH HOH . L 7 HOH A 5 605 1 HOH HOH . L 7 HOH A 6 606 59 HOH HOH . L 7 HOH A 7 607 41 HOH HOH . L 7 HOH A 8 608 85 HOH HOH . L 7 HOH A 9 609 68 HOH HOH . L 7 HOH A 10 610 3 HOH HOH . L 7 HOH A 11 611 88 HOH HOH . L 7 HOH A 12 612 91 HOH HOH . L 7 HOH A 13 613 37 HOH HOH . L 7 HOH A 14 614 93 HOH HOH . L 7 HOH A 15 615 17 HOH HOH . L 7 HOH A 16 616 11 HOH HOH . L 7 HOH A 17 617 8 HOH HOH . L 7 HOH A 18 618 9 HOH HOH . L 7 HOH A 19 619 69 HOH HOH . L 7 HOH A 20 620 33 HOH HOH . L 7 HOH A 21 621 64 HOH HOH . L 7 HOH A 22 622 7 HOH HOH . L 7 HOH A 23 623 38 HOH HOH . L 7 HOH A 24 624 14 HOH HOH . L 7 HOH A 25 625 45 HOH HOH . L 7 HOH A 26 626 30 HOH HOH . L 7 HOH A 27 627 36 HOH HOH . L 7 HOH A 28 628 6 HOH HOH . L 7 HOH A 29 629 35 HOH HOH . L 7 HOH A 30 630 31 HOH HOH . L 7 HOH A 31 631 42 HOH HOH . L 7 HOH A 32 632 70 HOH HOH . L 7 HOH A 33 633 5 HOH HOH . L 7 HOH A 34 634 21 HOH HOH . L 7 HOH A 35 635 24 HOH HOH . L 7 HOH A 36 636 19 HOH HOH . L 7 HOH A 37 637 51 HOH HOH . L 7 HOH A 38 638 4 HOH HOH . L 7 HOH A 39 639 60 HOH HOH . L 7 HOH A 40 640 39 HOH HOH . L 7 HOH A 41 641 48 HOH HOH . L 7 HOH A 42 642 81 HOH HOH . L 7 HOH A 43 643 15 HOH HOH . L 7 HOH A 44 644 49 HOH HOH . L 7 HOH A 45 645 2 HOH HOH . L 7 HOH A 46 646 54 HOH HOH . L 7 HOH A 47 647 63 HOH HOH . L 7 HOH A 48 648 77 HOH HOH . L 7 HOH A 49 649 40 HOH HOH . L 7 HOH A 50 650 10 HOH HOH . L 7 HOH A 51 651 58 HOH HOH . L 7 HOH A 52 652 28 HOH HOH . L 7 HOH A 53 653 46 HOH HOH . L 7 HOH A 54 654 34 HOH HOH . L 7 HOH A 55 655 47 HOH HOH . L 7 HOH A 56 656 56 HOH HOH . L 7 HOH A 57 657 55 HOH HOH . L 7 HOH A 58 658 20 HOH HOH . L 7 HOH A 59 659 80 HOH HOH . L 7 HOH A 60 660 66 HOH HOH . L 7 HOH A 61 661 61 HOH HOH . L 7 HOH A 62 662 75 HOH HOH . L 7 HOH A 63 663 87 HOH HOH . L 7 HOH A 64 664 72 HOH HOH . L 7 HOH A 65 665 83 HOH HOH . L 7 HOH A 66 666 62 HOH HOH . L 7 HOH A 67 667 43 HOH HOH . L 7 HOH A 68 668 92 HOH HOH . L 7 HOH A 69 669 67 HOH HOH . L 7 HOH A 70 670 78 HOH HOH . L 7 HOH A 71 671 94 HOH HOH . L 7 HOH A 72 672 25 HOH HOH . L 7 HOH A 73 673 71 HOH HOH . L 7 HOH A 74 674 89 HOH HOH . L 7 HOH A 75 675 96 HOH HOH . L 7 HOH A 76 676 90 HOH HOH . L 7 HOH A 77 677 53 HOH HOH . M 7 HOH B 1 201 18 HOH HOH . M 7 HOH B 2 202 27 HOH HOH . M 7 HOH B 3 203 65 HOH HOH . M 7 HOH B 4 204 52 HOH HOH . M 7 HOH B 5 205 76 HOH HOH . M 7 HOH B 6 206 13 HOH HOH . M 7 HOH B 7 207 23 HOH HOH . M 7 HOH B 8 208 84 HOH HOH . M 7 HOH B 9 209 74 HOH HOH . M 7 HOH B 10 210 57 HOH HOH . M 7 HOH B 11 211 82 HOH HOH . M 7 HOH B 12 212 79 HOH HOH . M 7 HOH B 13 213 50 HOH HOH . M 7 HOH B 14 214 29 HOH HOH . M 7 HOH B 15 215 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 XOO . . . D 4 10.879 7.35 -27.456 1 33.67 ? N1 XOO 502 A 1 HETATM 2 C C2 XOO . . . D 4 9.498 9.528 -29.838 1 31.65 ? C2 XOO 502 A 1 HETATM 3 C C3 XOO . . . D 4 10.345 10.615 -29.85 1 36.27 ? C3 XOO 502 A 1 HETATM 4 C C21 XOO . . . D 4 20.059 13.438 -34.31 1 50.88 ? C21 XOO 502 A 1 HETATM 5 C C22 XOO . . . D 4 20.839 14.396 -33.684 1 49.38 ? C22 XOO 502 A 1 HETATM 6 C C4 XOO . . . D 4 11.436 10.606 -29.013 1 31.09 ? C4 XOO 502 A 1 HETATM 7 C C5 XOO . . . D 4 11.659 9.511 -28.181 1 34.56 ? C5 XOO 502 A 1 HETATM 8 C C6 XOO . . . D 4 12.807 9.472 -27.253 1 31.95 ? C6 XOO 502 A 1 HETATM 9 C C1 XOO . . . D 4 10.733 8.43 -28.226 1 36.85 ? C1 XOO 502 A 1 HETATM 10 C C10 XOO . . . D 4 16.699 9.733 -25.114 1 47.39 ? C10 XOO 502 A 1 HETATM 11 C C11 XOO . . . D 4 14.839 9.735 -26.448 1 44.19 ? C11 XOO 502 A 1 HETATM 12 C C12 XOO . . . D 4 14.6 10.587 -28.72 1 34.85 ? C12 XOO 502 A 1 HETATM 13 C C13 XOO . . . D 4 14.384 9.979 -29.938 1 31.98 ? C13 XOO 502 A 1 HETATM 14 C C14 XOO . . . D 4 14.959 10.516 -31.074 1 36.25 ? C14 XOO 502 A 1 HETATM 15 C C15 XOO . . . D 4 15.754 11.647 -30.995 1 35.86 ? C15 XOO 502 A 1 HETATM 16 C C16 XOO . . . D 4 15.985 12.23 -29.759 1 28.65 ? C16 XOO 502 A 1 HETATM 17 C C17 XOO . . . D 4 15.398 11.711 -28.618 1 39.76 ? C17 XOO 502 A 1 HETATM 18 C C18 XOO . . . D 4 16.395 12.224 -32.227 1 42.6 ? C18 XOO 502 A 1 HETATM 19 C C19 XOO . . . D 4 18.046 13.823 -32.99 1 49.81 ? C19 XOO 502 A 1 HETATM 20 C C20 XOO . . . D 4 18.95 12.756 -33.558 1 46.8 ? C20 XOO 502 A 1 HETATM 21 C C23 XOO . . . D 4 21.847 15.037 -34.357 1 44.38 ? C23 XOO 502 A 1 HETATM 22 C C24 XOO . . . D 4 22.074 14.763 -35.718 1 56.04 ? C24 XOO 502 A 1 HETATM 23 C C25 XOO . . . D 4 23.166 15.449 -36.395 1 48.18 ? C25 XOO 502 A 1 HETATM 24 C C26 XOO . . . D 4 21.278 13.787 -36.35 1 51.45 ? C26 XOO 502 A 1 HETATM 25 C C27 XOO . . . D 4 20.266 13.151 -35.65 1 45.46 ? C27 XOO 502 A 1 HETATM 26 C C28 XOO . . . D 4 18.132 10.108 -25 1 46.09 ? C28 XOO 502 A 1 HETATM 27 C C29 XOO . . . D 4 18.685 11.012 -25.904 1 49.77 ? C29 XOO 502 A 1 HETATM 28 C C30 XOO . . . D 4 20.02 11.38 -25.822 1 53.21 ? C30 XOO 502 A 1 HETATM 29 C C31 XOO . . . D 4 20.823 10.833 -24.849 1 50.14 ? C31 XOO 502 A 1 HETATM 30 C C32 XOO . . . D 4 20.296 9.923 -23.958 1 43.55 ? C32 XOO 502 A 1 HETATM 31 C C33 XOO . . . D 4 18.962 9.558 -24.031 1 48.8 ? C33 XOO 502 A 1 HETATM 32 C C7 XOO . . . D 4 14.05 9.111 -25.518 1 40.89 ? C7 XOO 502 A 1 HETATM 33 C C8 XOO . . . D 4 14.631 8.764 -24.3 1 37.46 ? C8 XOO 502 A 1 HETATM 34 C C9 XOO . . . D 4 15.958 9.082 -24.098 1 41.07 ? C9 XOO 502 A 1 HETATM 35 N N2 XOO . . . D 4 9.675 8.445 -29.067 1 32.26 ? N2 XOO 502 A 1 HETATM 36 N N3 XOO . . . D 4 12.768 8.944 -26.038 1 39.27 ? N3 XOO 502 A 1 HETATM 37 N N4 XOO . . . D 4 16.134 10.044 -26.297 1 40.23 ? N4 XOO 502 A 1 HETATM 38 N N5 XOO . . . D 4 14.051 10 -27.54 1 35.45 ? N5 XOO 502 A 1 HETATM 39 N N6 XOO . . . D 4 17.309 13.285 -31.851 1 55.65 ? N6 XOO 502 A 1 HETATM 40 O O2 XOO . . . D 4 21.408 13.448 -37.666 1 47.84 ? O2 XOO 502 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 40 #