data_8UX7 # _model_server_result.job_id 8wd_zH1vhDyXgo29oxZFiA _model_server_result.datetime_utc '2025-07-20 15:00:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ux7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":303}' # _entry.id 8UX7 # _exptl.entry_id 8UX7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 408.629 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UX7 _cell.length_a 89.35 _cell.length_b 109.414 _cell.length_c 126.364 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UX7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 89.35 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 8 A GLU 8 1_555 C MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc2 A OD2 ASP 10 A ASP 10 1_555 C MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc3 A OD1 ASP 10 A ASP 10 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc4 A OD2 ASP 10 A ASP 10 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc5 A O TYR 12 A TYR 12 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc6 A OD1 ASN 14 A ASN 14 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc7 A OD1 ASP 19 A ASP 19 1_555 C MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc8 A OD2 ASP 19 A ASP 19 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc9 A NE2 HIS 24 A HIS 24 1_555 C MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc10 C MN MN . A MN 301 1_555 K O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc11 C MN MN . A MN 301 1_555 K O HOH . A HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc12 D CA CA . A CA 302 1_555 K O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc13 D CA CA . A CA 302 1_555 K O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc14 B OE2 GLU 8 B GLU 8 1_555 G MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc15 B OD2 ASP 10 B ASP 10 1_555 G MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc16 B OD1 ASP 10 B ASP 10 1_555 H CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc17 B OD2 ASP 10 B ASP 10 1_555 H CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc18 B O TYR 12 B TYR 12 1_555 H CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc19 B OD1 ASN 14 B ASN 14 1_555 H CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc20 B OD1 ASP 19 B ASP 19 1_555 G MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc21 B OD2 ASP 19 B ASP 19 1_555 H CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc22 B NE2 HIS 24 B HIS 24 1_555 G MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc23 B O SER 31 B SER 31 1_555 J K K . B K 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc24 B O ARG 33 B ARG 33 1_555 J K K . B K 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc25 G MN MN . B MN 301 1_555 L O HOH . B HOH 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc26 G MN MN . B MN 301 1_555 L O HOH . B HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc27 H CA CA . B CA 302 1_555 L O HOH . B HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc28 H CA CA . B CA 302 1_555 L O HOH . B HOH 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? # _chem_comp.formula 'C14 H15 Br Cl N O6' _chem_comp.formula_weight 408.629 _chem_comp.id XMM _chem_comp.mon_nstd_flag n _chem_comp.name '5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms '(2R,3S,4S,5S,6R)-2-(5-BROMO-4-CHLORO-1H-INDOL-3-YLOXY)-TETRAHYDRO-6-(HYDROXYMETHYL)-2H-PYRAN-3,4,5-TRIOL;(5-BROMO-4-CHLORO-3-INDOLYL)-Alpha-D-MANNOSE;5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannoside;5-bromo-4-chloro-1H-indol-3-yl D-mannoside;5-bromo-4-chloro-1H-indol-3-yl mannoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C2 XMM sing 376 n n O2 HO2 XMM sing 377 n n C2 C3 XMM sing 378 n n C2 C1 XMM sing 379 n n C2 H2 XMM sing 380 n n C3 O3 XMM sing 381 n n C3 C4 XMM sing 382 n n C3 H3 XMM sing 383 n n O3 HO3 XMM sing 384 n n C4 O4 XMM sing 385 n n C4 C5 XMM sing 386 n n C4 H4 XMM sing 387 n n O4 HO4 XMM sing 388 n n C5 O5 XMM sing 389 n n C5 C6 XMM sing 390 n n C5 H5 XMM sing 391 n n O5 C1 XMM sing 392 n n C6 O6 XMM sing 393 n n C6 H61 XMM sing 394 n n C6 H62 XMM sing 395 n n O6 HO6 XMM sing 396 n n C1 O1 XMM sing 397 n n C1 H1 XMM sing 398 n n O1 C7 XMM sing 399 n n C7 C8 XMM sing 400 n y C7 C11 XMM doub 401 n y C8 C9 XMM doub 402 n y C8 C10 XMM sing 403 n y C9 N1 XMM sing 404 n y C9 C12 XMM sing 405 n y N1 C11 XMM sing 406 n y N1 HN1 XMM sing 407 n n C11 H11 XMM sing 408 n n C10 CL XMM sing 409 n n C10 C13 XMM doub 410 n y C13 BR XMM sing 411 n n C13 C14 XMM sing 412 n y C14 C12 XMM doub 413 n y C14 H14 XMM sing 414 n n C12 H12 XMM sing 415 n n # _atom_sites.entry_id 8UX7 _atom_sites.fract_transf_matrix[1][1] 0.011192 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00914 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007914 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 301 301 MN MN . D 3 CA A 1 302 302 CA CA . E 4 XMM A 1 303 303 XMM XMM . F 5 GOL A 1 304 304 GOL GOL . G 2 MN B 1 301 301 MN MN . H 3 CA B 1 302 302 CA CA . I 4 XMM B 1 303 303 XMM XMM . J 6 K B 1 304 308 K K . K 7 HOH A 1 401 110 HOH HOH . K 7 HOH A 2 402 17 HOH HOH . K 7 HOH A 3 403 109 HOH HOH . K 7 HOH A 4 404 100 HOH HOH . K 7 HOH A 5 405 35 HOH HOH . K 7 HOH A 6 406 18 HOH HOH . K 7 HOH A 7 407 1 HOH HOH . K 7 HOH A 8 408 99 HOH HOH . K 7 HOH A 9 409 112 HOH HOH . K 7 HOH A 10 410 49 HOH HOH . K 7 HOH A 11 411 2 HOH HOH . K 7 HOH A 12 412 97 HOH HOH . K 7 HOH A 13 413 21 HOH HOH . K 7 HOH A 14 414 44 HOH HOH . K 7 HOH A 15 415 92 HOH HOH . K 7 HOH A 16 416 98 HOH HOH . K 7 HOH A 17 417 7 HOH HOH . K 7 HOH A 18 418 29 HOH HOH . K 7 HOH A 19 419 31 HOH HOH . K 7 HOH A 20 420 106 HOH HOH . K 7 HOH A 21 421 39 HOH HOH . K 7 HOH A 22 422 72 HOH HOH . K 7 HOH A 23 423 24 HOH HOH . K 7 HOH A 24 424 66 HOH HOH . K 7 HOH A 25 425 22 HOH HOH . K 7 HOH A 26 426 42 HOH HOH . K 7 HOH A 27 427 38 HOH HOH . K 7 HOH A 28 428 33 HOH HOH . K 7 HOH A 29 429 26 HOH HOH . K 7 HOH A 30 430 41 HOH HOH . K 7 HOH A 31 431 78 HOH HOH . K 7 HOH A 32 432 96 HOH HOH . K 7 HOH A 33 433 80 HOH HOH . K 7 HOH A 34 434 79 HOH HOH . K 7 HOH A 35 435 6 HOH HOH . K 7 HOH A 36 436 83 HOH HOH . K 7 HOH A 37 437 60 HOH HOH . K 7 HOH A 38 438 65 HOH HOH . K 7 HOH A 39 439 77 HOH HOH . K 7 HOH A 40 440 55 HOH HOH . K 7 HOH A 41 441 5 HOH HOH . K 7 HOH A 42 442 90 HOH HOH . K 7 HOH A 43 443 87 HOH HOH . K 7 HOH A 44 444 68 HOH HOH . K 7 HOH A 45 445 19 HOH HOH . K 7 HOH A 46 446 111 HOH HOH . K 7 HOH A 47 447 71 HOH HOH . K 7 HOH A 48 448 10 HOH HOH . K 7 HOH A 49 449 58 HOH HOH . K 7 HOH A 50 450 95 HOH HOH . L 7 HOH B 1 401 16 HOH HOH . L 7 HOH B 2 402 30 HOH HOH . L 7 HOH B 3 403 8 HOH HOH . L 7 HOH B 4 404 32 HOH HOH . L 7 HOH B 5 405 13 HOH HOH . L 7 HOH B 6 406 108 HOH HOH . L 7 HOH B 7 407 53 HOH HOH . L 7 HOH B 8 408 43 HOH HOH . L 7 HOH B 9 409 46 HOH HOH . L 7 HOH B 10 410 25 HOH HOH . L 7 HOH B 11 411 52 HOH HOH . L 7 HOH B 12 412 59 HOH HOH . L 7 HOH B 13 413 103 HOH HOH . L 7 HOH B 14 414 36 HOH HOH . L 7 HOH B 15 415 101 HOH HOH . L 7 HOH B 16 416 107 HOH HOH . L 7 HOH B 17 417 102 HOH HOH . L 7 HOH B 18 418 57 HOH HOH . L 7 HOH B 19 419 54 HOH HOH . L 7 HOH B 20 420 14 HOH HOH . L 7 HOH B 21 421 70 HOH HOH . L 7 HOH B 22 422 45 HOH HOH . L 7 HOH B 23 423 15 HOH HOH . L 7 HOH B 24 424 50 HOH HOH . L 7 HOH B 25 425 104 HOH HOH . L 7 HOH B 26 426 40 HOH HOH . L 7 HOH B 27 427 37 HOH HOH . L 7 HOH B 28 428 47 HOH HOH . L 7 HOH B 29 429 12 HOH HOH . L 7 HOH B 30 430 9 HOH HOH . L 7 HOH B 31 431 64 HOH HOH . L 7 HOH B 32 432 82 HOH HOH . L 7 HOH B 33 433 94 HOH HOH . L 7 HOH B 34 434 69 HOH HOH . L 7 HOH B 35 435 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 XMM . . . I 4 45.336 32.13 5.718 1 60.02 0 O2 XMM 303 B 1 HETATM 2 C C2 XMM . . . I 4 44.472 33.177 6.156 1 56.34 0 C2 XMM 303 B 1 HETATM 3 C C3 XMM . . . I 4 43.643 32.843 7.381 1 51.14 0 C3 XMM 303 B 1 HETATM 4 O O3 XMM . . . I 4 42.81 31.714 7.134 1 54.19 0 O3 XMM 303 B 1 HETATM 5 C C4 XMM . . . I 4 44.548 32.578 8.545 1 52.37 0 C4 XMM 303 B 1 HETATM 6 O O4 XMM . . . I 4 43.743 32.326 9.699 1 60.63 0 O4 XMM 303 B 1 HETATM 7 C C5 XMM . . . I 4 45.444 33.794 8.814 1 55.56 0 C5 XMM 303 B 1 HETATM 8 O O5 XMM . . . I 4 46.159 34.163 7.619 1 59.27 0 O5 XMM 303 B 1 HETATM 9 C C6 XMM . . . I 4 46.501 33.537 9.863 1 52.68 0 C6 XMM 303 B 1 HETATM 10 O O6 XMM . . . I 4 47.387 32.502 9.437 1 53.5 0 O6 XMM 303 B 1 HETATM 11 C C1 XMM . . . I 4 45.355 34.371 6.462 1 62.15 0 C1 XMM 303 B 1 HETATM 12 O O1 XMM . . . I 4 44.549 35.592 6.441 1 64.58 0 O1 XMM 303 B 1 HETATM 13 C C7 XMM . . . I 4 44.929 36.799 7.002 1 76.24 0 C7 XMM 303 B 1 HETATM 14 C C8 XMM . . . I 4 45.16 37.782 6.039 1 77.72 0 C8 XMM 303 B 1 HETATM 15 C C9 XMM . . . I 4 45.713 38.912 6.667 1 82.32 0 C9 XMM 303 B 1 HETATM 16 N N1 XMM . . . I 4 45.795 38.604 8.003 1 79.52 0 N1 XMM 303 B 1 HETATM 17 C C11 XMM . . . I 4 45.393 37.3 8.198 1 77.88 0 C11 XMM 303 B 1 HETATM 18 C C10 XMM . . . I 4 45.037 37.76 4.654 1 75.36 0 C10 XMM 303 B 1 HETATM 19 CL CL XMM . . . I 4 44.396 36.376 3.847 1 69.79 0 CL XMM 303 B 1 HETATM 20 C C13 XMM . . . I 4 45.365 38.9 3.943 1 91.74 0 C13 XMM 303 B 1 HETATM 21 BR BR XMM . . . I 4 45.126 38.859 2.062 1 84.66 0 BR XMM 303 B 1 HETATM 22 C C14 XMM . . . I 4 45.861 40.037 4.579 1 79.76 0 C14 XMM 303 B 1 HETATM 23 C C12 XMM . . . I 4 46.05 40.059 5.947 1 76.93 0 C12 XMM 303 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #