data_8UXI
#
_model_server_result.job_id            KUQeRtKV_ilcqxR1R3PS8g 
_model_server_result.datetime_utc      '2024-11-15 03:04:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8uxi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":5002}' 
#
_entry.id    8UXI 
#
_exptl.entry_id    8UXI 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8UXI 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8UXI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 L N N 
? 4 N N N 
? 4 P N N 
? 4 R N N 
? 4 T N N 
? 4 V N N 
? 4 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4806 A CYS 4806 1_555 A SG CYS 4812 A CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 F SG CYS 4806 B CYS 4806 1_555 F SG CYS 4812 B CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 G SG CYS 4806 C CYS 4806 1_555 G SG CYS 4812 C CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 H SG CYS 4806 D CYS 4806 1_555 H SG CYS 4812 D CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc1 A OE2 GLU 3848 A GLU 3848 1_555 K CA CA . A CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? 
metalc ? metalc2 A OE1 GLU 3922 A GLU 3922 1_555 K CA CA . A CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc3 A SG CYS 4888 A CYS 4888 1_555 I ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc4 A SG CYS 4891 A CYS 4891 1_555 I ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc5 A NE2 HIS 4908 A HIS 4908 1_555 I ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc6 A ND1 HIS 4913 A HIS 4913 1_555 I ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc7 A O THR 4931 A THR 4931 1_555 K CA CA . A CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
metalc ? metalc8 F OE2 GLU 3848 B GLU 3848 1_555 O CA CA . B CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? 
metalc ? metalc9 F OE1 GLU 3922 B GLU 3922 1_555 O CA CA . B CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc10 F SG CYS 4888 B CYS 4888 1_555 M ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc11 F SG CYS 4891 B CYS 4891 1_555 M ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc12 F NE2 HIS 4908 B HIS 4908 1_555 M ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc13 F ND1 HIS 4913 B HIS 4913 1_555 M ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc14 F O THR 4931 B THR 4931 1_555 O CA CA . B CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
metalc ? metalc15 G OE2 GLU 3848 C GLU 3848 1_555 S CA CA . C CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? 
metalc ? metalc16 G OE1 GLU 3922 C GLU 3922 1_555 S CA CA . C CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? 
metalc ? metalc17 G SG CYS 4888 C CYS 4888 1_555 Q ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc18 G SG CYS 4891 C CYS 4891 1_555 Q ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc19 G NE2 HIS 4908 C HIS 4908 1_555 Q ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc20 G ND1 HIS 4913 C HIS 4913 1_555 Q ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc21 G O THR 4931 C THR 4931 1_555 S CA CA . C CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
metalc ? metalc22 H OE2 GLU 3848 D GLU 3848 1_555 W CA CA . D CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? 
metalc ? metalc23 H OE1 GLU 3922 D GLU 3922 1_555 W CA CA . D CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc24 H SG CYS 4888 D CYS 4888 1_555 U ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc25 H SG CYS 4891 D CYS 4891 1_555 U ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc26 H NE2 HIS 4908 D HIS 4908 1_555 U ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc27 H ND1 HIS 4913 D HIS 4913 1_555 U ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc28 H O THR 4931 D THR 4931 1_555 W CA CA . D CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     8UXI 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 ZN A 1 5001 5001 ZN ZN . 
J 4 ATP A 1 5002 5002 ATP ATP . 
K 5 CA A 1 5003 5003 CA CA . 
L 4 ATP A 1 5004 5005 ATP ATP . 
M 3 ZN B 1 5001 5001 ZN ZN . 
N 4 ATP B 1 5002 5002 ATP ATP . 
O 5 CA B 1 5003 5003 CA CA . 
P 4 ATP B 1 5004 5005 ATP ATP . 
Q 3 ZN C 1 5001 5001 ZN ZN . 
R 4 ATP C 1 5002 5002 ATP ATP . 
S 5 CA C 1 5003 5003 CA CA . 
T 4 ATP C 1 5004 5005 ATP ATP . 
U 3 ZN D 1 5001 5001 ZN ZN . 
V 4 ATP D 1 5002 5002 ATP ATP . 
W 5 CA D 1 5003 5003 CA CA . 
X 4 ATP D 1 5004 5005 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . R 4 241.894 202.216 163.571 1 142.61 ? PG ATP 5002 C 1 
HETATM 2 O O1G ATP . . . R 4 242.575 202.975 162.483 1 142.61 ? O1G ATP 5002 C 1 
HETATM 3 O O2G ATP . . . R 4 241.903 200.698 163.36 1 142.61 ? O2G ATP 5002 C 1 
HETATM 4 O O3G ATP . . . R 4 242.433 202.531 164.971 1 142.61 ? O3G ATP 5002 C 1 
HETATM 5 P PB ATP . . . R 4 239.008 202.142 164.371 1 142.61 ? PB ATP 5002 C 1 
HETATM 6 O O1B ATP . . . R 4 238.379 203.248 165.12 1 142.61 ? O1B ATP 5002 C 1 
HETATM 7 O O2B ATP . . . R 4 238.126 201.465 163.322 1 142.61 ? O2B ATP 5002 C 1 
HETATM 8 O O3B ATP . . . R 4 240.344 202.602 163.641 1 142.61 ? O3B ATP 5002 C 1 
HETATM 9 P PA ATP . . . R 4 239.113 200.362 166.732 1 142.61 ? PA ATP 5002 C 1 
HETATM 10 O O1A ATP . . . R 4 240.129 200.6 167.778 1 142.61 ? O1A ATP 5002 C 1 
HETATM 11 O O2A ATP . . . R 4 238.785 198.893 166.468 1 142.61 ? O2A ATP 5002 C 1 
HETATM 12 O O3A ATP . . . R 4 239.546 201.001 165.342 1 142.61 ? O3A ATP 5002 C 1 
HETATM 13 O O5' ATP . . . R 4 237.768 201.122 167.056 1 142.61 ? O5' ATP 5002 C 1 
HETATM 14 C C5' ATP . . . R 4 237.594 201.844 168.293 1 142.61 ? C5' ATP 5002 C 1 
HETATM 15 C C4' ATP . . . R 4 236.43 202.79 168.136 1 142.61 ? C4' ATP 5002 C 1 
HETATM 16 O O4' ATP . . . R 4 235.255 202.221 168.759 1 142.61 ? O4' ATP 5002 C 1 
HETATM 17 C C3' ATP . . . R 4 236.622 204.168 168.768 1 142.61 ? C3' ATP 5002 C 1 
HETATM 18 O O3' ATP . . . R 4 236.016 205.182 167.975 1 142.61 ? O3' ATP 5002 C 1 
HETATM 19 C C2' ATP . . . R 4 235.927 204.017 170.122 1 142.61 ? C2' ATP 5002 C 1 
HETATM 20 O O2' ATP . . . R 4 235.446 205.262 170.615 1 142.61 ? O2' ATP 5002 C 1 
HETATM 21 C C1' ATP . . . R 4 234.763 203.099 169.753 1 142.61 ? C1' ATP 5002 C 1 
HETATM 22 N N9 ATP . . . R 4 234.256 202.304 170.865 1 142.61 ? N9 ATP 5002 C 1 
HETATM 23 C C8 ATP . . . R 4 233.099 202.515 171.569 1 142.61 ? C8 ATP 5002 C 1 
HETATM 24 N N7 ATP . . . R 4 232.888 201.646 172.526 1 142.61 ? N7 ATP 5002 C 1 
HETATM 25 C C5 ATP . . . R 4 233.985 200.802 172.45 1 142.61 ? C5 ATP 5002 C 1 
HETATM 26 C C6 ATP . . . R 4 234.365 199.668 173.193 1 142.61 ? C6 ATP 5002 C 1 
HETATM 27 N N6 ATP . . . R 4 233.649 199.168 174.205 1 142.61 ? N6 ATP 5002 C 1 
HETATM 28 N N1 ATP . . . R 4 235.522 199.056 172.859 1 142.61 ? N1 ATP 5002 C 1 
HETATM 29 C C2 ATP . . . R 4 236.243 199.55 171.849 1 142.61 ? C2 ATP 5002 C 1 
HETATM 30 N N3 ATP . . . R 4 235.986 200.61 171.079 1 142.61 ? N3 ATP 5002 C 1 
HETATM 31 C C4 ATP . . . R 4 234.837 201.196 171.431 1 142.61 ? C4 ATP 5002 C 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    468 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           31 
#