data_8UZ2 # _model_server_result.job_id q-9561B_rQr4pcEx53hh1A _model_server_result.datetime_utc '2024-12-03 16:36:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8uz2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":302}' # _entry.id 8UZ2 # _exptl.entry_id 8UZ2 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 809.571 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UZ2 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UZ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 N N N ? 9 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B NZ LYS 43 B LYS 122 1_555 J C11 BTN . B BTN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale2 F NZ LYS 43 F LYS 122 1_555 O C11 BTN . F BTN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? metalc ? metalc1 C OE1 GLU 276 C GLU 276 1_555 L MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc2 C OE2 GLU 288 C GLU 288 1_555 L MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc3 K O3B ADP . C ADP 501 1_555 L MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc4 K O2A ADP . C ADP 501 1_555 L MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc5 D SG CYS 26 D CYS 27 1_555 M ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc6 D SG CYS 29 D CYS 30 1_555 M ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc7 D SG CYS 45 D CYS 46 1_555 M ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc8 D SG CYS 48 D CYS 49 1_555 M ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc9 G OE1 GLU 276 G GLU 276 1_555 Q MG MG . G MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc10 G OE2 GLU 288 G GLU 288 1_555 Q MG MG . G MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc11 P O3B ADP . G ADP 501 1_555 Q MG MG . G MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc12 P O2A ADP . G ADP 501 1_555 Q MG MG . G MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc13 H SG CYS 26 H CYS 27 1_555 R ZN ZN . H ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc14 H SG CYS 29 H CYS 30 1_555 R ZN ZN . H ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc15 H SG CYS 45 H CYS 46 1_555 R ZN ZN . H ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc16 H SG CYS 48 H CYS 49 1_555 R ZN ZN . H ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 8UZ2 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 5 BTN B 1 201 201 BTN BTN . K 6 ADP C 1 501 1000 ADP ADP . L 7 MG C 1 502 1004 MG MG . M 8 ZN D 1 301 305 ZN ZN . N 9 ACO D 1 302 306 ACO ACO . O 5 BTN F 1 201 201 BTN BTN . P 6 ADP G 1 501 1000 ADP ADP . Q 7 MG G 1 502 1004 MG MG . R 8 ZN H 1 301 305 ZN ZN . S 9 ACO H 1 302 306 ACO ACO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . N 9 268.247 226.367 276.995 1 46.51 ? N1A ACO 302 D 1 HETATM 2 C C2A ACO . . . N 9 267.325 226.842 277.837 1 41.54 ? C2A ACO 302 D 1 HETATM 3 N N3A ACO . . . N 9 266.302 227.659 277.583 1 40.41 ? N3A ACO 302 D 1 HETATM 4 C C4A ACO . . . N 9 266.267 228 276.291 1 41.17 ? C4A ACO 302 D 1 HETATM 5 C C5A ACO . . . N 9 267.147 227.592 275.302 1 40.49 ? C5A ACO 302 D 1 HETATM 6 C C6A ACO . . . N 9 268.185 226.728 275.694 1 43.49 ? C6A ACO 302 D 1 HETATM 7 N N6A ACO . . . N 9 269.111 226.25 274.857 1 39.28 ? N6A ACO 302 D 1 HETATM 8 N N7A ACO . . . N 9 266.8 228.144 274.08 1 40.09 ? N7A ACO 302 D 1 HETATM 9 C C8A ACO . . . N 9 265.737 228.861 274.352 1 42.62 ? C8A ACO 302 D 1 HETATM 10 N N9A ACO . . . N 9 265.359 228.821 275.669 1 46.32 ? N9A ACO 302 D 1 HETATM 11 C C1B ACO . . . N 9 264.226 229.508 276.279 1 49.65 ? C1B ACO 302 D 1 HETATM 12 C C2B ACO . . . N 9 264.488 230.976 276.602 1 54.4 ? C2B ACO 302 D 1 HETATM 13 O O2B ACO . . . N 9 265.076 231.105 277.89 1 52.12 ? O2B ACO 302 D 1 HETATM 14 C C3B ACO . . . N 9 263.062 231.526 276.593 1 58.74 ? C3B ACO 302 D 1 HETATM 15 O O3B ACO . . . N 9 262.452 231.344 277.889 1 68.07 ? O3B ACO 302 D 1 HETATM 16 P P3B ACO . . . N 9 261.611 232.491 278.556 1 81.16 ? P3B ACO 302 D 1 HETATM 17 O O7A ACO . . . N 9 262.561 233.453 279.182 1 74.91 ? O7A ACO 302 D 1 HETATM 18 O O8A ACO . . . N 9 260.758 233.129 277.458 1 73.53 -1 O8A ACO 302 D 1 HETATM 19 O O9A ACO . . . N 9 260.667 231.832 279.57 1 66.67 ? O9A ACO 302 D 1 HETATM 20 C C4B ACO . . . N 9 262.33 230.66 275.567 1 53.36 ? C4B ACO 302 D 1 HETATM 21 O O4B ACO . . . N 9 263.158 229.497 275.359 1 50 ? O4B ACO 302 D 1 HETATM 22 C C5B ACO . . . N 9 262.062 231.328 274.243 1 54.42 ? C5B ACO 302 D 1 HETATM 23 O O5B ACO . . . N 9 263.311 231.451 273.53 1 59.23 ? O5B ACO 302 D 1 HETATM 24 P P1A ACO . . . N 9 263.925 232.865 273.191 1 67.14 ? P1A ACO 302 D 1 HETATM 25 O O1A ACO . . . N 9 265.397 232.835 273.283 1 56.34 -1 O1A ACO 302 D 1 HETATM 26 O O2A ACO . . . N 9 263.238 233.911 274.066 1 64.95 ? O2A ACO 302 D 1 HETATM 27 O O3A ACO . . . N 9 263.436 233.109 271.699 1 60.13 ? O3A ACO 302 D 1 HETATM 28 P P2A ACO . . . N 9 263.609 234.237 270.591 1 66.05 ? P2A ACO 302 D 1 HETATM 29 O O4A ACO . . . N 9 262.313 234.594 269.98 1 59.97 -1 O4A ACO 302 D 1 HETATM 30 O O5A ACO . . . N 9 264.354 235.396 271.252 1 61.29 ? O5A ACO 302 D 1 HETATM 31 O O6A ACO . . . N 9 264.565 233.548 269.542 1 60.06 ? O6A ACO 302 D 1 HETATM 32 C CBP ACO . . . N 9 266.946 233.283 269.187 1 54.15 ? CBP ACO 302 D 1 HETATM 33 C CCP ACO . . . N 9 265.825 234.237 269.585 1 58.72 ? CCP ACO 302 D 1 HETATM 34 C CDP ACO . . . N 9 268.144 234.112 268.715 1 44.69 ? CDP ACO 302 D 1 HETATM 35 C CEP ACO . . . N 9 266.447 232.392 268.045 1 52.28 ? CEP ACO 302 D 1 HETATM 36 C CAP ACO . . . N 9 267.334 232.392 270.401 1 55.95 ? CAP ACO 302 D 1 HETATM 37 O OAP ACO . . . N 9 267.243 230.996 270.169 1 52.26 ? OAP ACO 302 D 1 HETATM 38 C C9P ACO . . . N 9 268.645 232.768 271.107 1 57.8 ? C9P ACO 302 D 1 HETATM 39 O O9P ACO . . . N 9 268.593 233.523 272.072 1 65.21 ? O9P ACO 302 D 1 HETATM 40 N N8P ACO . . . N 9 269.803 232.249 270.665 1 51.52 ? N8P ACO 302 D 1 HETATM 41 C C7P ACO . . . N 9 269.946 231.341 269.534 1 45 ? C7P ACO 302 D 1 HETATM 42 C C6P ACO . . . N 9 271.081 230.36 269.748 1 42.25 ? C6P ACO 302 D 1 HETATM 43 C C5P ACO . . . N 9 271.595 230.401 271.166 1 47.08 ? C5P ACO 302 D 1 HETATM 44 O O5P ACO . . . N 9 272.63 230.997 271.45 1 49.13 ? O5P ACO 302 D 1 HETATM 45 N N4P ACO . . . N 9 270.856 229.762 272.069 1 46.55 ? N4P ACO 302 D 1 HETATM 46 C C3P ACO . . . N 9 271.196 229.707 273.486 1 45.85 ? C3P ACO 302 D 1 HETATM 47 C C2P ACO . . . N 9 272.451 228.9 273.765 1 51.02 ? C2P ACO 302 D 1 HETATM 48 S S1P ACO . . . N 9 272.05 227.131 273.91 1 54.29 ? S1P ACO 302 D 1 HETATM 49 C C ACO . . . N 9 273.394 226.404 273.026 1 44.9 ? C ACO 302 D 1 HETATM 50 O O ACO . . . N 9 273.244 225.538 272.21 1 38.26 ? O ACO 302 D 1 HETATM 51 C CH3 ACO . . . N 9 274.724 226.989 273.399 1 38.35 ? CH3 ACO 302 D 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 51 #