data_8UZ2
#
_model_server_result.job_id            Id4KcwkrEfCEL-BJcfoo4Q 
_model_server_result.datetime_utc      '2024-11-21 09:29:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8uz2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":501}' 
#
_entry.id    8UZ2 
#
_exptl.entry_id    8UZ2 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8UZ2 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8UZ2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    nonameric 
_pdbx_struct_assembly.oligomeric_count      9 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 K N N 
? 6 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B NZ LYS 43 B LYS 122 1_555 J C11 BTN . B BTN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
covale ? covale2 F NZ LYS 43 F LYS 122 1_555 O C11 BTN . F BTN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
metalc ? metalc1 C OE1 GLU 276 C GLU 276 1_555 L MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
metalc ? metalc2 C OE2 GLU 288 C GLU 288 1_555 L MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc3 K O3B ADP . C ADP 501 1_555 L MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc4 K O2A ADP . C ADP 501 1_555 L MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc5 D SG CYS 26 D CYS 27 1_555 M ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc6 D SG CYS 29 D CYS 30 1_555 M ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc7 D SG CYS 45 D CYS 46 1_555 M ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc8 D SG CYS 48 D CYS 49 1_555 M ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc9 G OE1 GLU 276 G GLU 276 1_555 Q MG MG . G MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? 
metalc ? metalc10 G OE2 GLU 288 G GLU 288 1_555 Q MG MG . G MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc11 P O3B ADP . G ADP 501 1_555 Q MG MG . G MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc12 P O2A ADP . G ADP 501 1_555 Q MG MG . G MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
metalc ? metalc13 H SG CYS 26 H CYS 27 1_555 R ZN ZN . H ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc14 H SG CYS 29 H CYS 30 1_555 R ZN ZN . H ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc15 H SG CYS 45 H CYS 46 1_555 R ZN ZN . H ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc16 H SG CYS 48 H CYS 49 1_555 R ZN ZN . H ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 92 n n 
PB O2B ADP sing 93 n n 
PB O3B ADP sing 94 n n 
PB O3A ADP sing 95 n n 
O2B HOB2 ADP sing 96 n n 
O3B HOB3 ADP sing 97 n n 
PA O1A ADP doub 98 n n 
PA O2A ADP sing 99 n n 
PA O3A ADP sing 100 n n 
PA O5' ADP sing 101 n n 
O2A HOA2 ADP sing 102 n n 
O5' C5' ADP sing 103 n n 
C5' C4' ADP sing 104 n n 
C5' "H5'1" ADP sing 105 n n 
C5' "H5'2" ADP sing 106 n n 
C4' O4' ADP sing 107 n n 
C4' C3' ADP sing 108 n n 
C4' H4' ADP sing 109 n n 
O4' C1' ADP sing 110 n n 
C3' O3' ADP sing 111 n n 
C3' C2' ADP sing 112 n n 
C3' H3' ADP sing 113 n n 
O3' HO3' ADP sing 114 n n 
C2' O2' ADP sing 115 n n 
C2' C1' ADP sing 116 n n 
C2' H2' ADP sing 117 n n 
O2' HO2' ADP sing 118 n n 
C1' N9 ADP sing 119 n n 
C1' H1' ADP sing 120 n n 
N9 C8 ADP sing 121 n y 
N9 C4 ADP sing 122 n y 
C8 N7 ADP doub 123 n y 
C8 H8 ADP sing 124 n n 
N7 C5 ADP sing 125 n y 
C5 C6 ADP sing 126 n y 
C5 C4 ADP doub 127 n y 
C6 N6 ADP sing 128 n n 
C6 N1 ADP doub 129 n y 
N6 HN61 ADP sing 130 n n 
N6 HN62 ADP sing 131 n n 
N1 C2 ADP sing 132 n y 
C2 N3 ADP doub 133 n y 
C2 H2 ADP sing 134 n n 
N3 C4 ADP sing 135 n y 
#
_atom_sites.entry_id                     8UZ2 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 5 BTN B 1 201 201 BTN BTN . 
K 6 ADP C 1 501 1000 ADP ADP . 
L 7 MG C 1 502 1004 MG MG . 
M 8 ZN D 1 301 305 ZN ZN . 
N 9 ACO D 1 302 306 ACO ACO . 
O 5 BTN F 1 201 201 BTN BTN . 
P 6 ADP G 1 501 1000 ADP ADP . 
Q 7 MG G 1 502 1004 MG MG . 
R 8 ZN H 1 301 305 ZN ZN . 
S 9 ACO H 1 302 306 ACO ACO . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . K 6 229.782 239.128 235.422 1 18.35 ? PB ADP 501 C 1 
HETATM 2 O O1B ADP . . . K 6 231.022 239.79 234.916 1 18.56 ? O1B ADP 501 C 1 
HETATM 3 O O2B ADP . . . K 6 230.038 238.296 236.647 1 19.49 -1 O2B ADP 501 C 1 
HETATM 4 O O3B ADP . . . K 6 228.573 240.047 235.428 1 17.86 ? O3B ADP 501 C 1 
HETATM 5 P PA ADP . . . K 6 228.097 237.304 233.935 1 15.22 ? PA ADP 501 C 1 
HETATM 6 O O1A ADP . . . K 6 228.351 235.82 234.002 1 12.95 -1 O1A ADP 501 C 1 
HETATM 7 O O2A ADP . . . K 6 226.915 237.855 234.691 1 16.63 ? O2A ADP 501 C 1 
HETATM 8 O O3A ADP . . . K 6 229.492 238.007 234.298 1 16.67 ? O3A ADP 501 C 1 
HETATM 9 O O5' ADP . . . K 6 227.945 237.73 232.398 1 15 ? O5' ADP 501 C 1 
HETATM 10 C C5' ADP . . . K 6 227.847 239.114 232.077 1 13.68 ? C5' ADP 501 C 1 
HETATM 11 C C4' ADP . . . K 6 227.349 239.275 230.656 1 12.92 ? C4' ADP 501 C 1 
HETATM 12 O O4' ADP . . . K 6 228.233 238.59 229.764 1 12.99 ? O4' ADP 501 C 1 
HETATM 13 C C3' ADP . . . K 6 225.979 238.654 230.425 1 11.72 ? C3' ADP 501 C 1 
HETATM 14 O O3' ADP . . . K 6 224.93 239.57 230.729 1 11.79 ? O3' ADP 501 C 1 
HETATM 15 C C2' ADP . . . K 6 226.032 238.336 228.951 1 12.49 ? C2' ADP 501 C 1 
HETATM 16 O O2' ADP . . . K 6 225.701 239.498 228.157 1 14.25 ? O2' ADP 501 C 1 
HETATM 17 C C1' ADP . . . K 6 227.487 237.962 228.717 1 12.55 ? C1' ADP 501 C 1 
HETATM 18 N N9 ADP . . . K 6 227.537 236.48 228.829 1 12.57 ? N9 ADP 501 C 1 
HETATM 19 C C8 ADP . . . K 6 227.863 235.768 229.919 1 12.75 ? C8 ADP 501 C 1 
HETATM 20 N N7 ADP . . . K 6 227.781 234.441 229.697 1 11.56 ? N7 ADP 501 C 1 
HETATM 21 C C5 ADP . . . K 6 227.364 234.288 228.434 1 11.07 ? C5 ADP 501 C 1 
HETATM 22 C C6 ADP . . . K 6 227.06 233.137 227.563 1 12.04 ? C6 ADP 501 C 1 
HETATM 23 N N6 ADP . . . K 6 227.17 231.862 228.03 1 11.17 ? N6 ADP 501 C 1 
HETATM 24 N N1 ADP . . . K 6 226.654 233.404 226.3 1 12.45 ? N1 ADP 501 C 1 
HETATM 25 C C2 ADP . . . K 6 226.536 234.668 225.837 1 12.08 ? C2 ADP 501 C 1 
HETATM 26 N N3 ADP . . . K 6 226.797 235.759 226.582 1 11.77 ? N3 ADP 501 C 1 
HETATM 27 C C4 ADP . . . K 6 227.199 235.632 227.868 1 12.56 ? C4 ADP 501 C 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#