data_8V0I
#
_model_server_result.job_id            lhv4t8I_QUTJtXHVvYqNRQ 
_model_server_result.datetime_utc      '2024-11-26 12:15:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8v0i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":401}' 
#
_entry.id    8V0I 
#
_exptl.entry_id    8V0I 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 H N N 
? 6 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLN 139 A GLN 137 1_555 I MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? 
metalc ? metalc2 H O1B ADP . A ADP 401 1_555 I MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? 
metalc ? metalc3 B OE1 GLN 139 B GLN 137 1_555 K MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? 
metalc ? metalc4 J O1B ADP . B ADP 401 1_555 K MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? 
metalc ? metalc5 C OD1 ASP 65 C ASP 65 1_555 L CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? 
metalc ? metalc6 C OD2 ASP 65 C ASP 65 1_555 L CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.994 ? 
metalc ? metalc7 C OD1 ASP 67 C ASP 67 1_555 L CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? 
metalc ? metalc8 C OD2 ASP 67 C ASP 67 1_555 L CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? 
metalc ? metalc9 C OG SER 69 C SER 69 1_555 L CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.161 ? 
metalc ? metalc10 C O THR 71 C THR 71 1_555 L CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.828 ? 
metalc ? metalc11 C OD1 ASP 105 C ASP 105 1_555 N CA CA . C CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? 
metalc ? metalc12 C OD1 ASN 107 C ASN 107 1_555 N CA CA . C CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
metalc ? metalc13 C OD2 ASP 109 C ASP 109 1_555 N CA CA . C CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? 
metalc ? metalc14 C O TYR 111 C TYR 111 1_555 N CA CA . C CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc15 C OE1 GLU 116 C GLU 116 1_555 N CA CA . C CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? 
metalc ? metalc16 C OE2 GLU 116 C GLU 116 1_555 N CA CA . C CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc17 C O GLY 140 C GLY 140 1_555 M CA CA . C CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.161 ? 
metalc ? metalc18 C OD1 ASP 141 C ASP 141 1_555 M CA CA . C CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? 
metalc ? metalc19 C OD1 ASN 143 C ASN 143 1_555 M CA CA . C CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.013 ? 
metalc ? metalc20 C OD1 ASP 145 C ASP 145 1_555 M CA CA . C CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.131 ? 
metalc ? metalc21 C O ARG 147 C ARG 147 1_555 M CA CA . C CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc22 C OE1 GLU 152 C GLU 152 1_555 M CA CA . C CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.171 ? 
metalc ? metalc23 C OE2 GLU 152 C GLU 152 1_555 M CA CA . C CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     8V0I 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 6 ADP A 1 401 401 ADP ADP . 
I 7 MG A 1 402 402 MG MG . 
J 6 ADP B 1 401 401 ADP ADP . 
K 7 MG B 1 402 402 MG MG . 
L 8 CA C 1 201 201 CA CA . 
M 8 CA C 1 202 202 CA CA . 
N 8 CA C 1 203 203 CA CA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . H 6 233.799 208.847 243.64 1 11.99 ? PB ADP 401 A 1 
HETATM 2 O O1B ADP . . . H 6 233.378 208.809 242.196 1 11.99 ? O1B ADP 401 A 1 
HETATM 3 O O2B ADP . . . H 6 234.888 207.873 243.993 1 11.99 ? O2B ADP 401 A 1 
HETATM 4 O O3B ADP . . . H 6 233.977 210.225 244.219 1 11.99 ? O3B ADP 401 A 1 
HETATM 5 P PA ADP . . . H 6 232.446 206.736 244.829 1 11.99 ? PA ADP 401 A 1 
HETATM 6 O O1A ADP . . . H 6 232.331 205.903 243.587 1 11.99 ? O1A ADP 401 A 1 
HETATM 7 O O2A ADP . . . H 6 233.501 206.461 245.854 1 11.99 ? O2A ADP 401 A 1 
HETATM 8 O O3A ADP . . . H 6 232.535 208.282 244.437 1 11.99 ? O3A ADP 401 A 1 
HETATM 9 O O5' ADP . . . H 6 231.041 206.721 245.579 1 11.99 ? O5' ADP 401 A 1 
HETATM 10 C C5' ADP . . . H 6 230.968 206.505 246.979 1 11.99 ? C5' ADP 401 A 1 
HETATM 11 C C4' ADP . . . H 6 229.543 206.824 247.376 1 11.99 ? C4' ADP 401 A 1 
HETATM 12 O O4' ADP . . . H 6 228.688 205.817 246.846 1 11.99 ? O4' ADP 401 A 1 
HETATM 13 C C3' ADP . . . H 6 229.347 206.835 248.868 1 11.99 ? C3' ADP 401 A 1 
HETATM 14 O O3' ADP . . . H 6 229.214 208.187 249.302 1 11.99 ? O3' ADP 401 A 1 
HETATM 15 C C2' ADP . . . H 6 228.049 206.101 249.094 1 11.99 ? C2' ADP 401 A 1 
HETATM 16 O O2' ADP . . . H 6 227.019 207.056 249.332 1 11.99 ? O2' ADP 401 A 1 
HETATM 17 C C1' ADP . . . H 6 227.74 205.381 247.806 1 11.99 ? C1' ADP 401 A 1 
HETATM 18 N N9 ADP . . . H 6 227.965 203.941 248.025 1 11.99 ? N9 ADP 401 A 1 
HETATM 19 C C8 ADP . . . H 6 229.165 203.369 248.169 1 11.99 ? C8 ADP 401 A 1 
HETATM 20 N N7 ADP . . . H 6 229.054 202.036 248.364 1 11.99 ? N7 ADP 401 A 1 
HETATM 21 C C5 ADP . . . H 6 227.752 201.745 248.349 1 11.99 ? C5 ADP 401 A 1 
HETATM 22 C C6 ADP . . . H 6 226.947 200.523 248.504 1 11.99 ? C6 ADP 401 A 1 
HETATM 23 N N6 ADP . . . H 6 227.531 199.322 248.713 1 11.99 ? N6 ADP 401 A 1 
HETATM 24 N N1 ADP . . . H 6 225.613 200.647 248.431 1 11.99 ? N1 ADP 401 A 1 
HETATM 25 C C2 ADP . . . H 6 225.032 201.834 248.227 1 11.99 ? C2 ADP 401 A 1 
HETATM 26 N N3 ADP . . . H 6 225.698 202.987 248.076 1 11.99 ? N3 ADP 401 A 1 
HETATM 27 C C4 ADP . . . H 6 227.035 203.001 248.131 1 11.99 ? C4 ADP 401 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           27 
#