data_8V15 # _model_server_result.job_id 2kSwFvfmdQAumiTTEggKvA _model_server_result.datetime_utc '2024-11-20 05:22:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8v15 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":402}' # _entry.id 8V15 # _exptl.entry_id 8V15 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.334 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(1P)-3',5-di(prop-2-en-1-yl)[1,1'-biphenyl]-2,4'-diol" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.61 _cell.angle_gamma 90 _cell.entry_id 8V15 _cell.length_a 34.683 _cell.length_b 159.432 _cell.length_c 53.047 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8V15 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,J,K 1 1 C,D,G,H,I,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C LYS 3 B LYS 3 1_555 B N FDL 4 B FDL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale2 D C LYS 3 D LYS 3 1_555 D N FDL 4 D FDL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 A SG CYS 139 A CYS 256 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc2 A SG CYS 142 A CYS 259 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc3 A SG CYS 163 A CYS 280 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc4 A SG CYS 166 A CYS 283 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc5 C SG CYS 139 C CYS 256 1_555 G ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc6 C SG CYS 142 C CYS 259 1_555 G ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc7 C SG CYS 163 C CYS 280 1_555 G ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc8 C SG CYS 166 C CYS 283 1_555 G ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? # _chem_comp.formula 'C18 H18 O2' _chem_comp.formula_weight 266.334 _chem_comp.id Y4T _chem_comp.mon_nstd_flag . _chem_comp.name "(1P)-3',5-di(prop-2-en-1-yl)[1,1'-biphenyl]-2,4'-diol" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Honokiol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C15 Y4T doub 503 n n C15 C14 Y4T sing 504 n n C14 C13 Y4T sing 505 n n C3 C4 Y4T sing 506 n n C3 C2 Y4T sing 507 n n C13 C17 Y4T doub 508 n y C13 C12 Y4T sing 509 n y C17 C9 Y4T sing 510 n y C1 C2 Y4T doub 511 n n C4 C18 Y4T doub 512 n y C4 C5 Y4T sing 513 n y C18 C8 Y4T sing 514 n y O2 C12 Y4T sing 515 n n C12 C11 Y4T doub 516 n y C5 C6 Y4T doub 517 n y C9 C8 Y4T sing 518 n n C9 C10 Y4T doub 519 n y C8 C7 Y4T doub 520 n y C6 C7 Y4T sing 521 n y C7 O1 Y4T sing 522 n n C11 C10 Y4T sing 523 n y C1 H1 Y4T sing 524 n n C1 H2 Y4T sing 525 n n O1 H3 Y4T sing 526 n n C2 H4 Y4T sing 527 n n C3 H5 Y4T sing 528 n n C3 H6 Y4T sing 529 n n C5 H7 Y4T sing 530 n n C6 H8 Y4T sing 531 n n C10 H9 Y4T sing 532 n n C11 H10 Y4T sing 533 n n C14 H11 Y4T sing 534 n n C14 H12 Y4T sing 535 n n C15 H13 Y4T sing 536 n n C16 H14 Y4T sing 537 n n C16 H15 Y4T sing 538 n n C17 H16 Y4T sing 539 n n C18 H17 Y4T sing 540 n n O2 H18 Y4T sing 541 n n # _atom_sites.entry_id 8V15 _atom_sites.fract_transf_matrix[1][1] 0.028833 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000305 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006272 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018852 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 401 5 ZN ZN . F 4 CNA A 1 402 6 CNA CNA . G 3 ZN C 1 401 5 ZN ZN . H 5 Y4T C 1 402 0 Y4T HON . I 4 CNA C 1 403 6 CNA CNA . J 6 HOH A 1 501 21 HOH HOH . J 6 HOH A 2 502 19 HOH HOH . J 6 HOH A 3 503 11 HOH HOH . J 6 HOH A 4 504 5 HOH HOH . J 6 HOH A 5 505 23 HOH HOH . J 6 HOH A 6 506 24 HOH HOH . J 6 HOH A 7 507 6 HOH HOH . J 6 HOH A 8 508 17 HOH HOH . J 6 HOH A 9 509 22 HOH HOH . J 6 HOH A 10 510 10 HOH HOH . J 6 HOH A 11 511 30 HOH HOH . J 6 HOH A 12 512 9 HOH HOH . J 6 HOH A 13 513 14 HOH HOH . J 6 HOH A 14 514 27 HOH HOH . J 6 HOH A 15 515 15 HOH HOH . J 6 HOH A 16 516 31 HOH HOH . K 6 HOH B 1 101 25 HOH HOH . L 6 HOH C 1 501 13 HOH HOH . L 6 HOH C 2 502 29 HOH HOH . L 6 HOH C 3 503 1 HOH HOH . L 6 HOH C 4 504 4 HOH HOH . L 6 HOH C 5 505 16 HOH HOH . L 6 HOH C 6 506 2 HOH HOH . L 6 HOH C 7 507 26 HOH HOH . L 6 HOH C 8 508 12 HOH HOH . L 6 HOH C 9 509 18 HOH HOH . L 6 HOH C 10 510 3 HOH HOH . L 6 HOH C 11 511 8 HOH HOH . L 6 HOH C 12 512 7 HOH HOH . L 6 HOH C 13 513 28 HOH HOH . L 6 HOH C 14 514 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 Y4T . . . H 5 17.436 -34.666 14.163 0.9 124.8 ? C1 Y4T 402 C 1 HETATM 2 O O1 Y4T . . . H 5 11.236 -38.352 15.953 0.9 120.88 ? O1 Y4T 402 C 1 HETATM 3 C C2 Y4T . . . H 5 16.299 -35.196 14.473 0.9 113.04 ? C2 Y4T 402 C 1 HETATM 4 C C7 Y4T . . . H 5 12.287 -37.73 15.315 0.9 133.87 ? C7 Y4T 402 C 1 HETATM 5 C C8 Y4T . . . H 5 13.175 -38.478 14.524 0.9 127.34 ? C8 Y4T 402 C 1 HETATM 6 C C3 Y4T . . . H 5 15.428 -35.71 13.411 0.9 119.13 ? C3 Y4T 402 C 1 HETATM 7 C C4 Y4T . . . H 5 14.364 -36.412 14.056 0.9 87.22 ? C4 Y4T 402 C 1 HETATM 8 C C5 Y4T . . . H 5 13.526 -35.69 14.802 0.9 60.88 ? C5 Y4T 402 C 1 HETATM 9 C C6 Y4T . . . H 5 12.454 -36.317 15.415 0.9 117.37 ? C6 Y4T 402 C 1 HETATM 10 C C9 Y4T . . . H 5 13.17 -39.965 14.43 0.9 131.16 ? C9 Y4T 402 C 1 HETATM 11 C C10 Y4T . . . H 5 13.536 -40.72 15.549 0.9 111.67 ? C10 Y4T 402 C 1 HETATM 12 C C11 Y4T . . . H 5 13.582 -42.103 15.522 0.9 111.81 ? C11 Y4T 402 C 1 HETATM 13 C C12 Y4T . . . H 5 13.3 -42.764 14.332 0.9 136.77 ? C12 Y4T 402 C 1 HETATM 14 C C13 Y4T . . . H 5 12.951 -42.048 13.166 0.9 147.71 ? C13 Y4T 402 C 1 HETATM 15 C C14 Y4T . . . H 5 12.632 -42.777 11.84 0.9 134.92 ? C14 Y4T 402 C 1 HETATM 16 C C15 Y4T . . . H 5 13.682 -42.602 10.744 0.9 125.56 ? C15 Y4T 402 C 1 HETATM 17 C C16 Y4T . . . H 5 14.911 -43.104 10.61 0.9 94.49 ? C16 Y4T 402 C 1 HETATM 18 C C17 Y4T . . . H 5 12.904 -40.653 13.238 0.9 147.18 ? C17 Y4T 402 C 1 HETATM 19 C C18 Y4T . . . H 5 14.225 -37.776 13.94 0.9 117.64 ? C18 Y4T 402 C 1 HETATM 20 O O2 Y4T . . . H 5 13.361 -44.125 14.371 0.9 122.39 ? O2 Y4T 402 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #