data_8V1O # _model_server_result.job_id qZTQhmPRwnpm1yz31X002Q _model_server_result.datetime_utc '2024-11-22 12:00:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8v1o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 8V1O # _exptl.entry_id 8V1O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 450.454 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[2-(3-hydroxy-3-methylbutyl)-6-(2-hydroxypropan-2-yl)-2H-indazol-5-yl]-6-(trifluoromethyl)pyridine-2-carboxamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 123.73 _cell.angle_gamma 90 _cell.entry_id 8V1O _cell.length_a 142.85 _cell.length_b 140.49 _cell.length_c 87.94 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8V1O _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,M 1 1 B,I,N 2 1 C,J,O 3 1 D,K,L,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 I N N ? 2 J N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TPO 209 A TPO 342 1_555 A N VAL 210 A VAL 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 A C MET 211 A MET 344 1_555 A N TPO 212 A TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale3 A C TPO 212 A TPO 345 1_555 A N SEP 213 A SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale4 A C SEP 213 A SEP 346 1_555 A N ARG 214 A ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale5 B C TPO 209 B TPO 342 1_555 B N VAL 210 B VAL 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale6 B C MET 211 B MET 344 1_555 B N TPO 212 B TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale7 B C TPO 212 B TPO 345 1_555 B N SEP 213 B SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale8 B C SEP 213 B SEP 346 1_555 B N ARG 214 B ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale9 C C GLN 208 C GLN 341 1_555 C N TPO 209 C TPO 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale10 C C TPO 209 C TPO 342 1_555 C N VAL 210 C VAL 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale11 C C MET 211 C MET 344 1_555 C N TPO 212 C TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale12 C C TPO 212 C TPO 345 1_555 C N SEP 213 C SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale13 C C SEP 213 C SEP 346 1_555 C N ARG 214 C ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale14 D C TPO 209 D TPO 342 1_555 D N VAL 210 D VAL 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale15 D C MET 211 D MET 344 1_555 D N TPO 212 D TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale16 D C TPO 212 D TPO 345 1_555 D N SEP 213 D SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale17 D C SEP 213 D SEP 346 1_555 D N ARG 214 D ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? # _chem_comp.formula 'C22 H25 F3 N4 O3' _chem_comp.formula_weight 450.454 _chem_comp.id Y9T _chem_comp.mon_nstd_flag . _chem_comp.name N-[2-(3-hydroxy-3-methylbutyl)-6-(2-hydroxypropan-2-yl)-2H-indazol-5-yl]-6-(trifluoromethyl)pyridine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C1 Y9T doub 432 n y C6 C5 Y9T sing 433 n y F10 C7 Y9T sing 434 n n C1 C2 Y9T sing 435 n y C5 C4 Y9T doub 436 n y C2 C7 Y9T sing 437 n n C2 N3 Y9T doub 438 n y C7 F9 Y9T sing 439 n n C7 F8 Y9T sing 440 n n N3 C4 Y9T sing 441 n y C4 C11 Y9T sing 442 n n C11 O12 Y9T doub 443 n n C11 N13 Y9T sing 444 n n N13 C14 Y9T sing 445 n n C30 C29 Y9T sing 446 n n C31 C29 Y9T sing 447 n n C14 C19 Y9T doub 448 n y C14 C15 Y9T sing 449 n y C29 C15 Y9T sing 450 n n C29 O32 Y9T sing 451 n n C19 C18 Y9T sing 452 n y C15 C16 Y9T doub 453 n y C18 C17 Y9T sing 454 n y C18 C22 Y9T doub 455 n y C16 C17 Y9T sing 456 n y C17 N20 Y9T doub 457 n y C22 N21 Y9T sing 458 n y N20 N21 Y9T sing 459 n y N21 C23 Y9T sing 460 n n C24 C23 Y9T sing 461 n n C24 C25 Y9T sing 462 n n C26 C25 Y9T sing 463 n n C25 O28 Y9T sing 464 n n C25 C27 Y9T sing 465 n n C5 H1 Y9T sing 466 n n C6 H2 Y9T sing 467 n n C22 H3 Y9T sing 468 n n C24 H4 Y9T sing 469 n n C24 H5 Y9T sing 470 n n C26 H6 Y9T sing 471 n n C26 H7 Y9T sing 472 n n C26 H8 Y9T sing 473 n n C1 H9 Y9T sing 474 n n N13 H10 Y9T sing 475 n n C16 H11 Y9T sing 476 n n C19 H12 Y9T sing 477 n n C23 H13 Y9T sing 478 n n C23 H14 Y9T sing 479 n n C27 H15 Y9T sing 480 n n C27 H16 Y9T sing 481 n n C27 H17 Y9T sing 482 n n O28 H18 Y9T sing 483 n n C30 H19 Y9T sing 484 n n C30 H20 Y9T sing 485 n n C30 H21 Y9T sing 486 n n C31 H22 Y9T sing 487 n n C31 H23 Y9T sing 488 n n C31 H24 Y9T sing 489 n n O32 H25 Y9T sing 490 n n # _atom_sites.entry_id 8V1O _atom_sites.fract_transf_matrix[1][1] 0.007 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004674 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007118 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013674 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 Y9T A 1 501 1 Y9T LIG . F 3 GOL A 1 502 1 GOL GOL . G 3 GOL A 1 503 2 GOL GOL . H 4 SO4 A 1 504 1 SO4 SO4 . I 2 Y9T B 1 501 2 Y9T LIG . J 2 Y9T C 1 501 3 Y9T LIG . K 2 Y9T D 1 501 4 Y9T LIG . L 5 CL D 1 502 1 CL CL . M 6 HOH A 1 601 102 HOH HOH . M 6 HOH A 2 602 81 HOH HOH . M 6 HOH A 3 603 112 HOH HOH . M 6 HOH A 4 604 101 HOH HOH . M 6 HOH A 5 605 35 HOH HOH . M 6 HOH A 6 606 4 HOH HOH . M 6 HOH A 7 607 9 HOH HOH . M 6 HOH A 8 608 99 HOH HOH . M 6 HOH A 9 609 22 HOH HOH . M 6 HOH A 10 610 98 HOH HOH . M 6 HOH A 11 611 46 HOH HOH . M 6 HOH A 12 612 109 HOH HOH . M 6 HOH A 13 613 85 HOH HOH . M 6 HOH A 14 614 82 HOH HOH . M 6 HOH A 15 615 11 HOH HOH . M 6 HOH A 16 616 30 HOH HOH . M 6 HOH A 17 617 32 HOH HOH . M 6 HOH A 18 618 10 HOH HOH . M 6 HOH A 19 619 65 HOH HOH . M 6 HOH A 20 620 106 HOH HOH . M 6 HOH A 21 621 110 HOH HOH . M 6 HOH A 22 622 97 HOH HOH . M 6 HOH A 23 623 105 HOH HOH . M 6 HOH A 24 624 91 HOH HOH . M 6 HOH A 25 625 62 HOH HOH . M 6 HOH A 26 626 28 HOH HOH . M 6 HOH A 27 627 104 HOH HOH . M 6 HOH A 28 628 16 HOH HOH . M 6 HOH A 29 629 26 HOH HOH . M 6 HOH A 30 630 100 HOH HOH . M 6 HOH A 31 631 84 HOH HOH . M 6 HOH A 32 632 107 HOH HOH . M 6 HOH A 33 633 63 HOH HOH . M 6 HOH A 34 634 90 HOH HOH . N 6 HOH B 1 601 95 HOH HOH . N 6 HOH B 2 602 61 HOH HOH . N 6 HOH B 3 603 47 HOH HOH . N 6 HOH B 4 604 24 HOH HOH . N 6 HOH B 5 605 74 HOH HOH . N 6 HOH B 6 606 1 HOH HOH . N 6 HOH B 7 607 60 HOH HOH . N 6 HOH B 8 608 14 HOH HOH . N 6 HOH B 9 609 59 HOH HOH . N 6 HOH B 10 610 43 HOH HOH . N 6 HOH B 11 611 7 HOH HOH . N 6 HOH B 12 612 96 HOH HOH . N 6 HOH B 13 613 27 HOH HOH . N 6 HOH B 14 614 21 HOH HOH . N 6 HOH B 15 615 92 HOH HOH . N 6 HOH B 16 616 64 HOH HOH . N 6 HOH B 17 617 58 HOH HOH . N 6 HOH B 18 618 17 HOH HOH . N 6 HOH B 19 619 75 HOH HOH . N 6 HOH B 20 620 94 HOH HOH . N 6 HOH B 21 621 5 HOH HOH . N 6 HOH B 22 622 37 HOH HOH . N 6 HOH B 23 623 12 HOH HOH . N 6 HOH B 24 624 18 HOH HOH . N 6 HOH B 25 625 76 HOH HOH . N 6 HOH B 26 626 87 HOH HOH . N 6 HOH B 27 627 77 HOH HOH . N 6 HOH B 28 628 88 HOH HOH . N 6 HOH B 29 629 79 HOH HOH . O 6 HOH C 1 601 2 HOH HOH . O 6 HOH C 2 602 56 HOH HOH . O 6 HOH C 3 603 31 HOH HOH . O 6 HOH C 4 604 33 HOH HOH . O 6 HOH C 5 605 116 HOH HOH . O 6 HOH C 6 606 66 HOH HOH . O 6 HOH C 7 607 3 HOH HOH . O 6 HOH C 8 608 117 HOH HOH . O 6 HOH C 9 609 68 HOH HOH . O 6 HOH C 10 610 41 HOH HOH . O 6 HOH C 11 611 55 HOH HOH . O 6 HOH C 12 612 93 HOH HOH . O 6 HOH C 13 613 36 HOH HOH . O 6 HOH C 14 614 44 HOH HOH . O 6 HOH C 15 615 50 HOH HOH . O 6 HOH C 16 616 51 HOH HOH . O 6 HOH C 17 617 54 HOH HOH . O 6 HOH C 18 618 70 HOH HOH . O 6 HOH C 19 619 114 HOH HOH . O 6 HOH C 20 620 48 HOH HOH . O 6 HOH C 21 621 111 HOH HOH . O 6 HOH C 22 622 72 HOH HOH . O 6 HOH C 23 623 20 HOH HOH . O 6 HOH C 24 624 38 HOH HOH . O 6 HOH C 25 625 115 HOH HOH . O 6 HOH C 26 626 67 HOH HOH . O 6 HOH C 27 627 108 HOH HOH . O 6 HOH C 28 628 52 HOH HOH . O 6 HOH C 29 629 78 HOH HOH . O 6 HOH C 30 630 45 HOH HOH . O 6 HOH C 31 631 69 HOH HOH . O 6 HOH C 32 632 23 HOH HOH . O 6 HOH C 33 633 71 HOH HOH . O 6 HOH C 34 634 118 HOH HOH . O 6 HOH C 35 635 73 HOH HOH . O 6 HOH C 36 636 80 HOH HOH . P 6 HOH D 1 601 53 HOH HOH . P 6 HOH D 2 602 113 HOH HOH . P 6 HOH D 3 603 42 HOH HOH . P 6 HOH D 4 604 19 HOH HOH . P 6 HOH D 5 605 49 HOH HOH . P 6 HOH D 6 606 57 HOH HOH . P 6 HOH D 7 607 8 HOH HOH . P 6 HOH D 8 608 89 HOH HOH . P 6 HOH D 9 609 83 HOH HOH . P 6 HOH D 10 610 40 HOH HOH . P 6 HOH D 11 611 6 HOH HOH . P 6 HOH D 12 612 103 HOH HOH . P 6 HOH D 13 613 29 HOH HOH . P 6 HOH D 14 614 13 HOH HOH . P 6 HOH D 15 615 25 HOH HOH . P 6 HOH D 16 616 15 HOH HOH . P 6 HOH D 17 617 86 HOH HOH . P 6 HOH D 18 618 34 HOH HOH . P 6 HOH D 19 619 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 Y9T . . . E 2 -31.276 5.776 16.397 1 43.11 ? N3 Y9T 501 A 1 HETATM 2 C C4 Y9T . . . E 2 -31.678 7.051 16.411 1 43.03 ? C4 Y9T 501 A 1 HETATM 3 C C5 Y9T . . . E 2 -31.367 7.896 15.354 1 41.69 ? C5 Y9T 501 A 1 HETATM 4 C C6 Y9T . . . E 2 -30.657 7.402 14.276 1 40.11 ? C6 Y9T 501 A 1 HETATM 5 C C7 Y9T . . . E 2 -30.115 3.839 15.44 1 48.26 ? C7 Y9T 501 A 1 HETATM 6 C C15 Y9T . . . E 2 -34.377 5.597 19.989 1 41.95 ? C15 Y9T 501 A 1 HETATM 7 C C17 Y9T . . . E 2 -35.764 6.694 21.562 1 43.54 ? C17 Y9T 501 A 1 HETATM 8 C C22 Y9T . . . E 2 -36.037 8.943 21.668 1 43.48 ? C22 Y9T 501 A 1 HETATM 9 C C24 Y9T . . . E 2 -38.714 9.78 22.982 1 51.96 ? C24 Y9T 501 A 1 HETATM 10 C C26 Y9T . . . E 2 -41.041 10.491 23.279 1 46.06 ? C26 Y9T 501 A 1 HETATM 11 C C1 Y9T . . . E 2 -30.257 6.082 14.308 1 40.85 ? C1 Y9T 501 A 1 HETATM 12 C C2 Y9T . . . E 2 -30.585 5.278 15.39 1 44.28 ? C2 Y9T 501 A 1 HETATM 13 F F8 Y9T . . . E 2 -29.241 3.782 16.529 1 51.08 ? F8 Y9T 501 A 1 HETATM 14 F F9 Y9T . . . E 2 -31.134 2.88 15.632 1 54.93 ? F9 Y9T 501 A 1 HETATM 15 F F10 Y9T . . . E 2 -29.369 3.537 14.298 1 48.83 ? F10 Y9T 501 A 1 HETATM 16 C C11 Y9T . . . E 2 -32.433 7.572 17.58 1 44.46 ? C11 Y9T 501 A 1 HETATM 17 O O12 Y9T . . . E 2 -32.356 8.737 17.888 1 53.09 ? O12 Y9T 501 A 1 HETATM 18 N N13 Y9T . . . E 2 -33.128 6.674 18.272 1 42 ? N13 Y9T 501 A 1 HETATM 19 C C14 Y9T . . . E 2 -33.966 6.799 19.391 1 41.16 ? C14 Y9T 501 A 1 HETATM 20 C C16 Y9T . . . E 2 -35.236 5.534 21.024 1 42.2 ? C16 Y9T 501 A 1 HETATM 21 C C18 Y9T . . . E 2 -35.36 7.972 20.953 1 43.8 ? C18 Y9T 501 A 1 HETATM 22 C C19 Y9T . . . E 2 -34.461 7.972 19.853 1 43.09 ? C19 Y9T 501 A 1 HETATM 23 N N20 Y9T . . . E 2 -36.605 6.927 22.553 1 44.7 ? N20 Y9T 501 A 1 HETATM 24 N N21 Y9T . . . E 2 -36.776 8.313 22.6 1 45.31 ? N21 Y9T 501 A 1 HETATM 25 C C23 Y9T . . . E 2 -37.587 8.959 23.61 1 48.58 ? C23 Y9T 501 A 1 HETATM 26 C C25 Y9T . . . E 2 -39.783 10.044 24.058 1 51.95 ? C25 Y9T 501 A 1 HETATM 27 C C27 Y9T . . . E 2 -39.262 11.118 25.029 1 51.3 ? C27 Y9T 501 A 1 HETATM 28 O O28 Y9T . . . E 2 -40.018 8.864 24.882 1 57.77 ? O28 Y9T 501 A 1 HETATM 29 C C29 Y9T . . . E 2 -33.876 4.272 19.504 1 43.26 ? C29 Y9T 501 A 1 HETATM 30 C C30 Y9T . . . E 2 -34.672 3.804 18.277 1 44.45 ? C30 Y9T 501 A 1 HETATM 31 C C31 Y9T . . . E 2 -32.366 4.213 19.314 1 42.1 ? C31 Y9T 501 A 1 HETATM 32 O O32 Y9T . . . E 2 -34.065 3.394 20.597 1 45.18 ? O32 Y9T 501 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #