data_8V1O
#
_model_server_result.job_id            HzHKYH78w7AfVYWjQoeUDg 
_model_server_result.datetime_utc      '2024-11-22 12:15:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8v1o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":503}' 
#
_entry.id    8V1O 
#
_exptl.entry_id    8V1O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          123.73 
_cell.angle_gamma         90 
_cell.entry_id            8V1O 
_cell.length_a            142.85 
_cell.length_b            140.49 
_cell.length_c            87.94 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8V1O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,M 1 1 
B,I,N 2 1 
C,J,O 3 1 
D,K,L,P 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C TPO 209 A TPO 342 1_555 A N VAL 210 A VAL 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale2 A C MET 211 A MET 344 1_555 A N TPO 212 A TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale3 A C TPO 212 A TPO 345 1_555 A N SEP 213 A SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale4 A C SEP 213 A SEP 346 1_555 A N ARG 214 A ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale5 B C TPO 209 B TPO 342 1_555 B N VAL 210 B VAL 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale6 B C MET 211 B MET 344 1_555 B N TPO 212 B TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale7 B C TPO 212 B TPO 345 1_555 B N SEP 213 B SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale8 B C SEP 213 B SEP 346 1_555 B N ARG 214 B ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale9 C C GLN 208 C GLN 341 1_555 C N TPO 209 C TPO 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? 
covale ? covale10 C C TPO 209 C TPO 342 1_555 C N VAL 210 C VAL 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale11 C C MET 211 C MET 344 1_555 C N TPO 212 C TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale12 C C TPO 212 C TPO 345 1_555 C N SEP 213 C SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale13 C C SEP 213 C SEP 346 1_555 C N ARG 214 C ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale14 D C TPO 209 D TPO 342 1_555 D N VAL 210 D VAL 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale15 D C MET 211 D MET 344 1_555 D N TPO 212 D TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale16 D C TPO 212 D TPO 345 1_555 D N SEP 213 D SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale17 D C SEP 213 D SEP 346 1_555 D N ARG 214 D ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8V1O 
_atom_sites.fract_transf_matrix[1][1]    0.007 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004674 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007118 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013674 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 Y9T A 1 501 1 Y9T LIG . 
F 3 GOL A 1 502 1 GOL GOL . 
G 3 GOL A 1 503 2 GOL GOL . 
H 4 SO4 A 1 504 1 SO4 SO4 . 
I 2 Y9T B 1 501 2 Y9T LIG . 
J 2 Y9T C 1 501 3 Y9T LIG . 
K 2 Y9T D 1 501 4 Y9T LIG . 
L 5 CL D 1 502 1 CL CL . 
M 6 HOH A 1 601 102 HOH HOH . 
M 6 HOH A 2 602 81 HOH HOH . 
M 6 HOH A 3 603 112 HOH HOH . 
M 6 HOH A 4 604 101 HOH HOH . 
M 6 HOH A 5 605 35 HOH HOH . 
M 6 HOH A 6 606 4 HOH HOH . 
M 6 HOH A 7 607 9 HOH HOH . 
M 6 HOH A 8 608 99 HOH HOH . 
M 6 HOH A 9 609 22 HOH HOH . 
M 6 HOH A 10 610 98 HOH HOH . 
M 6 HOH A 11 611 46 HOH HOH . 
M 6 HOH A 12 612 109 HOH HOH . 
M 6 HOH A 13 613 85 HOH HOH . 
M 6 HOH A 14 614 82 HOH HOH . 
M 6 HOH A 15 615 11 HOH HOH . 
M 6 HOH A 16 616 30 HOH HOH . 
M 6 HOH A 17 617 32 HOH HOH . 
M 6 HOH A 18 618 10 HOH HOH . 
M 6 HOH A 19 619 65 HOH HOH . 
M 6 HOH A 20 620 106 HOH HOH . 
M 6 HOH A 21 621 110 HOH HOH . 
M 6 HOH A 22 622 97 HOH HOH . 
M 6 HOH A 23 623 105 HOH HOH . 
M 6 HOH A 24 624 91 HOH HOH . 
M 6 HOH A 25 625 62 HOH HOH . 
M 6 HOH A 26 626 28 HOH HOH . 
M 6 HOH A 27 627 104 HOH HOH . 
M 6 HOH A 28 628 16 HOH HOH . 
M 6 HOH A 29 629 26 HOH HOH . 
M 6 HOH A 30 630 100 HOH HOH . 
M 6 HOH A 31 631 84 HOH HOH . 
M 6 HOH A 32 632 107 HOH HOH . 
M 6 HOH A 33 633 63 HOH HOH . 
M 6 HOH A 34 634 90 HOH HOH . 
N 6 HOH B 1 601 95 HOH HOH . 
N 6 HOH B 2 602 61 HOH HOH . 
N 6 HOH B 3 603 47 HOH HOH . 
N 6 HOH B 4 604 24 HOH HOH . 
N 6 HOH B 5 605 74 HOH HOH . 
N 6 HOH B 6 606 1 HOH HOH . 
N 6 HOH B 7 607 60 HOH HOH . 
N 6 HOH B 8 608 14 HOH HOH . 
N 6 HOH B 9 609 59 HOH HOH . 
N 6 HOH B 10 610 43 HOH HOH . 
N 6 HOH B 11 611 7 HOH HOH . 
N 6 HOH B 12 612 96 HOH HOH . 
N 6 HOH B 13 613 27 HOH HOH . 
N 6 HOH B 14 614 21 HOH HOH . 
N 6 HOH B 15 615 92 HOH HOH . 
N 6 HOH B 16 616 64 HOH HOH . 
N 6 HOH B 17 617 58 HOH HOH . 
N 6 HOH B 18 618 17 HOH HOH . 
N 6 HOH B 19 619 75 HOH HOH . 
N 6 HOH B 20 620 94 HOH HOH . 
N 6 HOH B 21 621 5 HOH HOH . 
N 6 HOH B 22 622 37 HOH HOH . 
N 6 HOH B 23 623 12 HOH HOH . 
N 6 HOH B 24 624 18 HOH HOH . 
N 6 HOH B 25 625 76 HOH HOH . 
N 6 HOH B 26 626 87 HOH HOH . 
N 6 HOH B 27 627 77 HOH HOH . 
N 6 HOH B 28 628 88 HOH HOH . 
N 6 HOH B 29 629 79 HOH HOH . 
O 6 HOH C 1 601 2 HOH HOH . 
O 6 HOH C 2 602 56 HOH HOH . 
O 6 HOH C 3 603 31 HOH HOH . 
O 6 HOH C 4 604 33 HOH HOH . 
O 6 HOH C 5 605 116 HOH HOH . 
O 6 HOH C 6 606 66 HOH HOH . 
O 6 HOH C 7 607 3 HOH HOH . 
O 6 HOH C 8 608 117 HOH HOH . 
O 6 HOH C 9 609 68 HOH HOH . 
O 6 HOH C 10 610 41 HOH HOH . 
O 6 HOH C 11 611 55 HOH HOH . 
O 6 HOH C 12 612 93 HOH HOH . 
O 6 HOH C 13 613 36 HOH HOH . 
O 6 HOH C 14 614 44 HOH HOH . 
O 6 HOH C 15 615 50 HOH HOH . 
O 6 HOH C 16 616 51 HOH HOH . 
O 6 HOH C 17 617 54 HOH HOH . 
O 6 HOH C 18 618 70 HOH HOH . 
O 6 HOH C 19 619 114 HOH HOH . 
O 6 HOH C 20 620 48 HOH HOH . 
O 6 HOH C 21 621 111 HOH HOH . 
O 6 HOH C 22 622 72 HOH HOH . 
O 6 HOH C 23 623 20 HOH HOH . 
O 6 HOH C 24 624 38 HOH HOH . 
O 6 HOH C 25 625 115 HOH HOH . 
O 6 HOH C 26 626 67 HOH HOH . 
O 6 HOH C 27 627 108 HOH HOH . 
O 6 HOH C 28 628 52 HOH HOH . 
O 6 HOH C 29 629 78 HOH HOH . 
O 6 HOH C 30 630 45 HOH HOH . 
O 6 HOH C 31 631 69 HOH HOH . 
O 6 HOH C 32 632 23 HOH HOH . 
O 6 HOH C 33 633 71 HOH HOH . 
O 6 HOH C 34 634 118 HOH HOH . 
O 6 HOH C 35 635 73 HOH HOH . 
O 6 HOH C 36 636 80 HOH HOH . 
P 6 HOH D 1 601 53 HOH HOH . 
P 6 HOH D 2 602 113 HOH HOH . 
P 6 HOH D 3 603 42 HOH HOH . 
P 6 HOH D 4 604 19 HOH HOH . 
P 6 HOH D 5 605 49 HOH HOH . 
P 6 HOH D 6 606 57 HOH HOH . 
P 6 HOH D 7 607 8 HOH HOH . 
P 6 HOH D 8 608 89 HOH HOH . 
P 6 HOH D 9 609 83 HOH HOH . 
P 6 HOH D 10 610 40 HOH HOH . 
P 6 HOH D 11 611 6 HOH HOH . 
P 6 HOH D 12 612 103 HOH HOH . 
P 6 HOH D 13 613 29 HOH HOH . 
P 6 HOH D 14 614 13 HOH HOH . 
P 6 HOH D 15 615 25 HOH HOH . 
P 6 HOH D 16 616 15 HOH HOH . 
P 6 HOH D 17 617 86 HOH HOH . 
P 6 HOH D 18 618 34 HOH HOH . 
P 6 HOH D 19 619 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 3 -43.145 12.276 2.877 1 61.85 ? C1 GOL 503 A 1 
HETATM 2 O O1 GOL . . . G 3 -42.2 11.449 2.201 1 54.45 ? O1 GOL 503 A 1 
HETATM 3 C C2 GOL . . . G 3 -43.694 11.618 4.132 1 64.09 ? C2 GOL 503 A 1 
HETATM 4 O O2 GOL . . . G 3 -45.04 12.044 4.373 1 66.05 ? O2 GOL 503 A 1 
HETATM 5 C C3 GOL . . . G 3 -42.849 11.854 5.37 1 60.5 ? C3 GOL 503 A 1 
HETATM 6 O O3 GOL . . . G 3 -42.863 13.219 5.78 1 63.61 ? O3 GOL 503 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           40 
_model_server_stats.create_model_time_ms    61 
_model_server_stats.query_time_ms           412 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#