data_8V2E
#
_model_server_result.job_id            hIY7Rc4cI93ks0hrItsHVw 
_model_server_result.datetime_utc      '2024-10-10 23:36:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8v2e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":201}' 
#
_entry.id    8V2E 
#
_exptl.entry_id    8V2E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8V2E 
_cell.length_a            78.032 
_cell.length_b            84.941 
_cell.length_c            205.969 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8V2E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,I,J,K 1 1 
D,E,F,H,L,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 98 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf2 A SG CYS 158 A CYS 140 1_555 A SG CYS 214 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 B SG CYS 22 B CYS 23 1_555 B SG CYS 87 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
disulf ? disulf4 B SG CYS 137 B CYS 134 1_555 B SG CYS 196 B CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf5 D SG CYS 22 D CYS 22 1_555 D SG CYS 98 D CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf6 D SG CYS 158 D CYS 140 1_555 D SG CYS 214 D CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf7 E SG CYS 22 E CYS 23 1_555 E SG CYS 87 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
disulf ? disulf8 E SG CYS 137 E CYS 134 1_555 E SG CYS 196 E CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
covale ? covale1 C ND2 ASN 75 C ASN 75 1_555 G C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale2 F ND2 ASN 75 F ASN 75 1_555 H C1 NAG . F NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8V2E 
_atom_sites.fract_transf_matrix[1][1]    0.012815 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011773 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004855 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 NAG C 1 201 1 NAG NAG . 
H 4 NAG F 1 201 2 NAG NAG . 
I 5 HOH A 1 301 16 HOH HOH . 
I 5 HOH A 2 302 24 HOH HOH . 
I 5 HOH A 3 303 8 HOH HOH . 
I 5 HOH A 4 304 33 HOH HOH . 
I 5 HOH A 5 305 18 HOH HOH . 
I 5 HOH A 6 306 17 HOH HOH . 
I 5 HOH A 7 307 35 HOH HOH . 
I 5 HOH A 8 308 15 HOH HOH . 
I 5 HOH A 9 309 14 HOH HOH . 
I 5 HOH A 10 310 40 HOH HOH . 
J 5 HOH B 1 301 4 HOH HOH . 
J 5 HOH B 2 302 21 HOH HOH . 
J 5 HOH B 3 303 28 HOH HOH . 
J 5 HOH B 4 304 22 HOH HOH . 
J 5 HOH B 5 305 5 HOH HOH . 
J 5 HOH B 6 306 34 HOH HOH . 
J 5 HOH B 7 307 26 HOH HOH . 
J 5 HOH B 8 308 32 HOH HOH . 
J 5 HOH B 9 309 23 HOH HOH . 
J 5 HOH B 10 310 19 HOH HOH . 
J 5 HOH B 11 311 20 HOH HOH . 
K 5 HOH C 1 301 45 HOH HOH . 
L 5 HOH D 1 301 38 HOH HOH . 
L 5 HOH D 2 302 3 HOH HOH . 
L 5 HOH D 3 303 42 HOH HOH . 
L 5 HOH D 4 304 9 HOH HOH . 
L 5 HOH D 5 305 6 HOH HOH . 
L 5 HOH D 6 306 2 HOH HOH . 
L 5 HOH D 7 307 37 HOH HOH . 
L 5 HOH D 8 308 12 HOH HOH . 
L 5 HOH D 9 309 10 HOH HOH . 
L 5 HOH D 10 310 29 HOH HOH . 
L 5 HOH D 11 311 41 HOH HOH . 
M 5 HOH E 1 301 7 HOH HOH . 
M 5 HOH E 2 302 25 HOH HOH . 
M 5 HOH E 3 303 11 HOH HOH . 
M 5 HOH E 4 304 39 HOH HOH . 
M 5 HOH E 5 305 27 HOH HOH . 
M 5 HOH E 6 306 13 HOH HOH . 
M 5 HOH E 7 307 36 HOH HOH . 
M 5 HOH E 8 308 30 HOH HOH . 
N 5 HOH F 1 301 1 HOH HOH . 
N 5 HOH F 2 302 31 HOH HOH . 
N 5 HOH F 3 303 43 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . H 4 -75.476 -12.073 57.565 1 122.04 ? C1 NAG 201 F 1 
HETATM 2 C C2 NAG . . . H 4 -76.169 -12.526 58.861 1 120.44 ? C2 NAG 201 F 1 
HETATM 3 C C3 NAG . . . H 4 -77.269 -13.553 58.563 1 122.65 ? C3 NAG 201 F 1 
HETATM 4 C C4 NAG . . . H 4 -78.22 -13.054 57.48 1 124.03 ? C4 NAG 201 F 1 
HETATM 5 C C5 NAG . . . H 4 -77.443 -12.626 56.239 1 122.49 ? C5 NAG 201 F 1 
HETATM 6 C C6 NAG . . . H 4 -78.323 -12.011 55.171 1 124.46 ? C6 NAG 201 F 1 
HETATM 7 C C7 NAG . . . H 4 -74.533 -12.318 60.691 1 118.22 ? C7 NAG 201 F 1 
HETATM 8 C C8 NAG . . . H 4 -73.595 -13.054 61.602 1 110.1 ? C8 NAG 201 F 1 
HETATM 9 N N2 NAG . . . H 4 -75.21 -13.069 59.814 1 119.2 ? N2 NAG 201 F 1 
HETATM 10 O O3 NAG . . . H 4 -78.016 -13.791 59.751 1 117.71 ? O3 NAG 201 F 1 
HETATM 11 O O4 NAG . . . H 4 -79.155 -14.073 57.14 1 121.06 ? O4 NAG 201 F 1 
HETATM 12 O O5 NAG . . . H 4 -76.474 -11.632 56.603 1 124.53 ? O5 NAG 201 F 1 
HETATM 13 O O6 NAG . . . H 4 -77.689 -12.001 53.898 1 125.22 ? O6 NAG 201 F 1 
HETATM 14 O O7 NAG . . . H 4 -74.666 -11.097 60.744 1 119.02 ? O7 NAG 201 F 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#