data_8V2J # _model_server_result.job_id RxejHvncuXdJQ3kbQ9Uijg _model_server_result.datetime_utc '2024-12-26 19:17:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8v2j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 8V2J # _exptl.entry_id 8V2J _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8V2J _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8V2J _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C OE2 GLU 71 A GLU 71 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc2 G O1G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc3 G O2B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc4 D OE2 GLU 71 D GLU 71 1_555 J MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc5 I O1G GTP . D GTP 501 1_555 J MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc6 I O2G GTP . D GTP 501 1_555 J MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? metalc ? metalc7 I O3B GTP . D GTP 501 1_555 J MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? metalc ? metalc8 I O2B GTP . D GTP 501 1_555 J MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 174 n n PG O2G GTP sing 175 n n PG O3G GTP sing 176 n n PG O3B GTP sing 177 n n O2G HOG2 GTP sing 178 n n O3G HOG3 GTP sing 179 n n O3B PB GTP sing 180 n n PB O1B GTP doub 181 n n PB O2B GTP sing 182 n n PB O3A GTP sing 183 n n O2B HOB2 GTP sing 184 n n O3A PA GTP sing 185 n n PA O1A GTP doub 186 n n PA O2A GTP sing 187 n n PA O5' GTP sing 188 n n O2A HOA2 GTP sing 189 n n O5' C5' GTP sing 190 n n C5' C4' GTP sing 191 n n C5' H5' GTP sing 192 n n C5' "H5''" GTP sing 193 n n C4' O4' GTP sing 194 n n C4' C3' GTP sing 195 n n C4' H4' GTP sing 196 n n O4' C1' GTP sing 197 n n C3' O3' GTP sing 198 n n C3' C2' GTP sing 199 n n C3' H3' GTP sing 200 n n O3' HO3' GTP sing 201 n n C2' O2' GTP sing 202 n n C2' C1' GTP sing 203 n n C2' H2' GTP sing 204 n n O2' HO2' GTP sing 205 n n C1' N9 GTP sing 206 n n C1' H1' GTP sing 207 n n N9 C8 GTP sing 208 n y N9 C4 GTP sing 209 n y C8 N7 GTP doub 210 n y C8 H8 GTP sing 211 n n N7 C5 GTP sing 212 n y C5 C6 GTP sing 213 n n C5 C4 GTP doub 214 n y C6 O6 GTP doub 215 n n C6 N1 GTP sing 216 n n N1 C2 GTP sing 217 n n N1 HN1 GTP sing 218 n n C2 N2 GTP sing 219 n n C2 N3 GTP doub 220 n n N2 HN21 GTP sing 221 n n N2 HN22 GTP sing 222 n n N3 C4 GTP sing 223 n n # _atom_sites.entry_id 8V2J _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GDP B 1 501 501 GDP GDP . F 3 GDP E 1 501 501 GDP GDP . G 4 GTP A 1 501 501 GTP GTP . H 5 MG A 1 502 502 MG MG . I 4 GTP D 1 501 501 GTP GTP . J 5 MG D 1 502 502 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . G 4 396.674 368.978 295.946 1 112.64 ? PG GTP 501 A 1 HETATM 2 O O1G GTP . . . G 4 396.06 367.637 296.268 1 101.32 ? O1G GTP 501 A 1 HETATM 3 O O2G GTP . . . G 4 398.065 369.061 296.522 1 102.53 ? O2G GTP 501 A 1 HETATM 4 O O3G GTP . . . G 4 395.808 370.082 296.496 1 115.45 ? O3G GTP 501 A 1 HETATM 5 O O3B GTP . . . G 4 396.735 369.134 294.351 1 101.09 ? O3B GTP 501 A 1 HETATM 6 P PB GTP . . . G 4 395.357 369.097 293.534 1 108.16 ? PB GTP 501 A 1 HETATM 7 O O1B GTP . . . G 4 395.673 369.245 292.068 1 104.41 ? O1B GTP 501 A 1 HETATM 8 O O2B GTP . . . G 4 394.584 367.836 293.825 1 100.72 ? O2B GTP 501 A 1 HETATM 9 O O3A GTP . . . G 4 394.586 370.397 294.083 1 106.37 ? O3A GTP 501 A 1 HETATM 10 P PA GTP . . . G 4 393.386 371.094 293.272 1 119.95 ? PA GTP 501 A 1 HETATM 11 O O1A GTP . . . G 4 393.449 370.74 291.809 1 109.81 ? O1A GTP 501 A 1 HETATM 12 O O2A GTP . . . G 4 392.056 370.705 293.866 1 109.1 ? O2A GTP 501 A 1 HETATM 13 O O5' GTP . . . G 4 393.645 372.67 293.459 1 116.54 ? O5' GTP 501 A 1 HETATM 14 C C5' GTP . . . G 4 392.592 373.537 293.817 1 108.65 ? C5' GTP 501 A 1 HETATM 15 C C4' GTP . . . G 4 391.892 374.076 292.577 1 99.39 ? C4' GTP 501 A 1 HETATM 16 O O4' GTP . . . G 4 391.444 373.014 291.764 1 103.46 ? O4' GTP 501 A 1 HETATM 17 C C3' GTP . . . G 4 390.656 374.875 292.941 1 104.64 ? C3' GTP 501 A 1 HETATM 18 O O3' GTP . . . G 4 390.923 376.252 292.83 1 108.08 ? O3' GTP 501 A 1 HETATM 19 C C2' GTP . . . G 4 389.603 374.468 291.933 1 101.01 ? C2' GTP 501 A 1 HETATM 20 O O2' GTP . . . G 4 389.277 375.557 291.104 1 105.4 ? O2' GTP 501 A 1 HETATM 21 C C1' GTP . . . G 4 390.241 373.363 291.111 1 104.45 ? C1' GTP 501 A 1 HETATM 22 N N9 GTP . . . G 4 389.35 372.194 291.023 1 101.55 ? N9 GTP 501 A 1 HETATM 23 C C8 GTP . . . G 4 389.375 371.084 291.823 1 102.25 ? C8 GTP 501 A 1 HETATM 24 N N7 GTP . . . G 4 388.409 370.235 291.405 1 107.2 ? N7 GTP 501 A 1 HETATM 25 C C5 GTP . . . G 4 387.781 370.775 290.34 1 103.13 ? C5 GTP 501 A 1 HETATM 26 C C6 GTP . . . G 4 386.736 370.332 289.538 1 103.93 ? C6 GTP 501 A 1 HETATM 27 O O6 GTP . . . G 4 386.205 369.246 289.756 1 105.72 ? O6 GTP 501 A 1 HETATM 28 N N1 GTP . . . G 4 386.286 371.123 288.504 1 101.86 ? N1 GTP 501 A 1 HETATM 29 C C2 GTP . . . G 4 386.881 372.343 288.268 1 100.78 ? C2 GTP 501 A 1 HETATM 30 N N2 GTP . . . G 4 386.454 373.105 287.268 1 103.91 ? N2 GTP 501 A 1 HETATM 31 N N3 GTP . . . G 4 387.917 372.776 289.068 1 98.52 ? N3 GTP 501 A 1 HETATM 32 C C4 GTP . . . G 4 388.362 372.008 290.09 1 100.22 ? C4 GTP 501 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #