data_8V2N # _model_server_result.job_id LHWHMPvFXUb8JWakVstmtQ _model_server_result.datetime_utc '2024-12-12 13:41:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8v2n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8V2N # _exptl.entry_id 8V2N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 662.46 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.75 _cell.angle_gamma 90 _cell.entry_id 8V2N _cell.length_a 34.339 _cell.length_b 53.178 _cell.length_c 68.539 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8V2N _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C LYS 3 B LYS 3 1_555 B N FDL 4 B FDL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 A SG CYS 139 A CYS 256 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc2 A SG CYS 142 A CYS 259 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc3 A SG CYS 163 A CYS 280 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc4 A SG CYS 166 A CYS 283 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? # _chem_comp.formula 'C22 H30 N7 O13 P2 1' _chem_comp.formula_weight 662.46 _chem_comp.id CNA _chem_comp.mon_nstd_flag . _chem_comp.name CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3B C3B CNA sing 70 n n O2B C2B CNA sing 71 n n C3B C2B CNA sing 72 n n C3B C4B CNA sing 73 n n C2B C1B CNA sing 74 n n N3A C2A CNA doub 75 n y N3A C4A CNA sing 76 n y C2A N1A CNA sing 77 n y C1B N9A CNA sing 78 n n C1B O4B CNA sing 79 n n C4B O4B CNA sing 80 n n C4B C5B CNA sing 81 n n C4A N9A CNA sing 82 n y C4A C5A CNA doub 83 n y N9A C8A CNA sing 84 n y N1A C6A CNA doub 85 n y O2A PA CNA doub 86 n n O5B C5B CNA sing 87 n n O5B PA CNA sing 88 n n C5A C6A CNA sing 89 n y C5A N7A CNA sing 90 n y C6A N6A CNA sing 91 n n C8A N7A CNA doub 92 n y PA O3 CNA sing 93 n n PA O1A CNA sing 94 n n O3 PN CNA sing 95 n n O1N PN CNA doub 96 n n PN O2N CNA sing 97 n n PN O5D CNA sing 98 n n C5D O5D CNA sing 99 n n C5D C4D CNA sing 100 n n C3D O3D CNA sing 101 n n C3D C4D CNA sing 102 n n C3D C2D CNA sing 103 n n C4D C4' CNA sing 104 n n O2D C2D CNA sing 105 n n C2D C1D CNA sing 106 n n C4' C1D CNA sing 107 n n C1D N1N CNA sing 108 n n N1N C6N CNA doub 109 n y N1N C2N CNA sing 110 n y C6N C5N CNA sing 111 n y C2N C3N CNA doub 112 n y C5N C4N CNA doub 113 n y C3N C4N CNA sing 114 n y C3N C7N CNA sing 115 n n N7N C7N CNA sing 116 n n C7N O7N CNA doub 117 n n O1A H1 CNA sing 118 n n C5B H2 CNA sing 119 n n C5B H3 CNA sing 120 n n C4B H4 CNA sing 121 n n C3B H5 CNA sing 122 n n O3B H6 CNA sing 123 n n C2B H7 CNA sing 124 n n O2B H8 CNA sing 125 n n C1B H9 CNA sing 126 n n C8A H10 CNA sing 127 n n N6A H11 CNA sing 128 n n N6A H12 CNA sing 129 n n C2A H13 CNA sing 130 n n O2N H14 CNA sing 131 n n C5D H15 CNA sing 132 n n C5D H16 CNA sing 133 n n C4D H17 CNA sing 134 n n C4' H18 CNA sing 135 n n C4' H19 CNA sing 136 n n C3D H20 CNA sing 137 n n O3D H21 CNA sing 138 n n C2D H22 CNA sing 139 n n O2D H23 CNA sing 140 n n C1D H24 CNA sing 141 n n C2N H25 CNA sing 142 n n N7N H26 CNA sing 143 n n N7N H27 CNA sing 144 n n C4N H28 CNA sing 145 n n C5N H29 CNA sing 146 n n C6N H30 CNA sing 147 n n # _atom_sites.entry_id 8V2N _atom_sites.fract_transf_matrix[1][1] 0.029121 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000888 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018805 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014597 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CNA A 1 401 401 CNA CNA . D 4 ZN A 1 402 1395 ZN ZN . E 5 HOH A 1 501 28 HOH HOH . E 5 HOH A 2 502 35 HOH HOH . E 5 HOH A 3 503 12 HOH HOH . E 5 HOH A 4 504 58 HOH HOH . E 5 HOH A 5 505 17 HOH HOH . E 5 HOH A 6 506 59 HOH HOH . E 5 HOH A 7 507 37 HOH HOH . E 5 HOH A 8 508 48 HOH HOH . E 5 HOH A 9 509 3 HOH HOH . E 5 HOH A 10 510 29 HOH HOH . E 5 HOH A 11 511 34 HOH HOH . E 5 HOH A 12 512 18 HOH HOH . E 5 HOH A 13 513 14 HOH HOH . E 5 HOH A 14 514 41 HOH HOH . E 5 HOH A 15 515 1 HOH HOH . E 5 HOH A 16 516 10 HOH HOH . E 5 HOH A 17 517 60 HOH HOH . E 5 HOH A 18 518 32 HOH HOH . E 5 HOH A 19 519 2 HOH HOH . E 5 HOH A 20 520 26 HOH HOH . E 5 HOH A 21 521 33 HOH HOH . E 5 HOH A 22 522 11 HOH HOH . E 5 HOH A 23 523 13 HOH HOH . E 5 HOH A 24 524 23 HOH HOH . E 5 HOH A 25 525 4 HOH HOH . E 5 HOH A 26 526 8 HOH HOH . E 5 HOH A 27 527 30 HOH HOH . E 5 HOH A 28 528 40 HOH HOH . E 5 HOH A 29 529 46 HOH HOH . E 5 HOH A 30 530 5 HOH HOH . E 5 HOH A 31 531 39 HOH HOH . E 5 HOH A 32 532 38 HOH HOH . E 5 HOH A 33 533 21 HOH HOH . E 5 HOH A 34 534 9 HOH HOH . E 5 HOH A 35 535 57 HOH HOH . E 5 HOH A 36 536 24 HOH HOH . E 5 HOH A 37 537 7 HOH HOH . E 5 HOH A 38 538 15 HOH HOH . E 5 HOH A 39 539 20 HOH HOH . E 5 HOH A 40 540 54 HOH HOH . E 5 HOH A 41 541 50 HOH HOH . E 5 HOH A 42 542 45 HOH HOH . E 5 HOH A 43 543 49 HOH HOH . E 5 HOH A 44 544 22 HOH HOH . E 5 HOH A 45 545 44 HOH HOH . E 5 HOH A 46 546 55 HOH HOH . E 5 HOH A 47 547 43 HOH HOH . E 5 HOH A 48 548 36 HOH HOH . E 5 HOH A 49 549 31 HOH HOH . E 5 HOH A 50 550 25 HOH HOH . E 5 HOH A 51 551 56 HOH HOH . E 5 HOH A 52 552 42 HOH HOH . E 5 HOH A 53 553 47 HOH HOH . E 5 HOH A 54 554 52 HOH HOH . E 5 HOH A 55 555 27 HOH HOH . E 5 HOH A 56 556 6 HOH HOH . E 5 HOH A 57 557 51 HOH HOH . E 5 HOH A 58 558 16 HOH HOH . E 5 HOH A 59 559 19 HOH HOH . F 5 HOH B 1 101 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA CNA . . . C 3 6.787 5.728 25.055 1 25.81 ? PA CNA 401 A 1 HETATM 2 O O1A CNA . . . C 3 5.658 5.607 26.031 1 34.52 ? O1A CNA 401 A 1 HETATM 3 O O2A CNA . . . C 3 8.126 6.153 25.564 1 29.06 ? O2A CNA 401 A 1 HETATM 4 O O5B CNA . . . C 3 6.919 4.348 24.246 1 23.85 ? O5B CNA 401 A 1 HETATM 5 C C5B CNA . . . C 3 7.863 4.244 23.157 1 23.66 ? C5B CNA 401 A 1 HETATM 6 C C4B CNA . . . C 3 7.872 2.82 22.651 1 23.96 ? C4B CNA 401 A 1 HETATM 7 O O4B CNA . . . C 3 8.929 2.67 21.672 1 22.48 ? O4B CNA 401 A 1 HETATM 8 C C3B CNA . . . C 3 8.141 1.734 23.707 1 24.71 ? C3B CNA 401 A 1 HETATM 9 O O3B CNA . . . C 3 7.409 0.554 23.413 1 23.03 ? O3B CNA 401 A 1 HETATM 10 C C2B CNA . . . C 3 9.64 1.483 23.537 1 26.17 ? C2B CNA 401 A 1 HETATM 11 O O2B CNA . . . C 3 10.049 0.192 23.938 1 31.57 ? O2B CNA 401 A 1 HETATM 12 C C1B CNA . . . C 3 9.76 1.598 22.033 1 23.25 ? C1B CNA 401 A 1 HETATM 13 N N9A CNA . . . C 3 11.106 1.867 21.562 1 23.27 ? N9A CNA 401 A 1 HETATM 14 C C8A CNA . . . C 3 11.95 2.858 21.995 1 22.91 ? C8A CNA 401 A 1 HETATM 15 N N7A CNA . . . C 3 13.084 2.894 21.342 1 24.51 ? N7A CNA 401 A 1 HETATM 16 C C5A CNA . . . C 3 12.986 1.865 20.422 1 23.29 ? C5A CNA 401 A 1 HETATM 17 C C6A CNA . . . C 3 13.87 1.392 19.436 1 24.33 ? C6A CNA 401 A 1 HETATM 18 N N6A CNA . . . C 3 15.051 1.95 19.173 1 24.95 ? N6A CNA 401 A 1 HETATM 19 N N1A CNA . . . C 3 13.468 0.329 18.694 1 23.4 ? N1A CNA 401 A 1 HETATM 20 C C2A CNA . . . C 3 12.257 -0.197 18.935 1 24.11 ? C2A CNA 401 A 1 HETATM 21 N N3A CNA . . . C 3 11.338 0.174 19.823 1 21.69 ? N3A CNA 401 A 1 HETATM 22 C C4A CNA . . . C 3 11.765 1.224 20.544 1 23.8 ? C4A CNA 401 A 1 HETATM 23 O O3 CNA . . . C 3 6.356 6.725 23.882 1 25.37 ? O3 CNA 401 A 1 HETATM 24 P PN CNA . . . C 3 4.967 6.883 23.093 1 23.13 ? PN CNA 401 A 1 HETATM 25 O O1N CNA . . . C 3 5.222 7.708 21.869 1 22.23 ? O1N CNA 401 A 1 HETATM 26 O O2N CNA . . . C 3 4.367 5.53 22.937 1 25.11 ? O2N CNA 401 A 1 HETATM 27 O O5D CNA . . . C 3 4.088 7.722 24.154 1 25.73 ? O5D CNA 401 A 1 HETATM 28 C C5D CNA . . . C 3 3.717 9.08 23.877 1 26.4 ? C5D CNA 401 A 1 HETATM 29 C C4D CNA . . . C 3 4.285 9.882 25.016 1 27.8 ? C4D CNA 401 A 1 HETATM 30 C C4' CNA . . . C 3 5.832 9.816 25.036 1 24.88 ? C4' CNA 401 A 1 HETATM 31 C C3D CNA . . . C 3 3.953 11.385 24.963 1 25.52 ? C3D CNA 401 A 1 HETATM 32 O O3D CNA . . . C 3 3.831 11.869 26.292 1 28.71 ? O3D CNA 401 A 1 HETATM 33 C C2D CNA . . . C 3 5.189 11.991 24.3 1 25.55 ? C2D CNA 401 A 1 HETATM 34 O O2D CNA . . . C 3 5.26 13.402 24.442 1 27.47 ? O2D CNA 401 A 1 HETATM 35 C C1D CNA . . . C 3 6.266 11.294 25.088 1 24.6 ? C1D CNA 401 A 1 HETATM 36 N N1N CNA . . . C 3 7.642 11.515 24.55 1 24.95 ? N1N CNA 401 A 1 HETATM 37 C C2N CNA . . . C 3 7.877 12.083 23.305 1 23.18 ? C2N CNA 401 A 1 HETATM 38 C C3N CNA . . . C 3 9.207 12.239 22.865 1 21.66 ? C3N CNA 401 A 1 HETATM 39 C C7N CNA . . . C 3 9.48 12.746 21.475 1 21.56 ? C7N CNA 401 A 1 HETATM 40 O O7N CNA . . . C 3 8.775 13.627 21.01 1 20.18 ? O7N CNA 401 A 1 HETATM 41 N N7N CNA . . . C 3 10.525 12.241 20.832 1 21.01 ? N7N CNA 401 A 1 HETATM 42 C C4N CNA . . . C 3 10.236 11.94 23.725 1 23.03 ? C4N CNA 401 A 1 HETATM 43 C C5N CNA . . . C 3 9.976 11.226 24.869 1 25.29 ? C5N CNA 401 A 1 HETATM 44 C C6N CNA . . . C 3 8.692 11.169 25.337 1 24.36 ? C6N CNA 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 373 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 44 #