data_8V33 # _model_server_result.job_id AKOPnvJNq9FtbNvmKFA7dg _model_server_result.datetime_utc '2025-02-05 15:53:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8v33 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8V33 # _exptl.entry_id 8V33 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.088 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SUCCINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8V33 _cell.length_a 69.634 _cell.length_b 69.634 _cell.length_c 66.59 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8V33 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H6 O4' _chem_comp.formula_weight 118.088 _chem_comp.id SIN _chem_comp.mon_nstd_flag . _chem_comp.name 'SUCCINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 SIN doub 290 n n C1 O2 SIN sing 291 n n C1 C2 SIN sing 292 n n O2 HO2 SIN sing 293 n n C2 C3 SIN sing 294 n n C2 H21 SIN sing 295 n n C2 H22 SIN sing 296 n n C3 C4 SIN sing 297 n n C3 H31 SIN sing 298 n n C3 H32 SIN sing 299 n n C4 O3 SIN doub 300 n n C4 O4 SIN sing 301 n n O4 HO4 SIN sing 302 n n # _atom_sites.entry_id 8V33 _atom_sites.fract_transf_matrix[1][1] 0.014361 _atom_sites.fract_transf_matrix[1][2] 0.008291 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016582 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015017 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SIN A 1 201 1 SIN SIN . C 3 HOH A 1 301 17 HOH HOH . C 3 HOH A 2 302 151 HOH HOH . C 3 HOH A 3 303 84 HOH HOH . C 3 HOH A 4 304 99 HOH HOH . C 3 HOH A 5 305 85 HOH HOH . C 3 HOH A 6 306 26 HOH HOH . C 3 HOH A 7 307 129 HOH HOH . C 3 HOH A 8 308 37 HOH HOH . C 3 HOH A 9 309 15 HOH HOH . C 3 HOH A 10 310 11 HOH HOH . C 3 HOH A 11 311 12 HOH HOH . C 3 HOH A 12 312 98 HOH HOH . C 3 HOH A 13 313 45 HOH HOH . C 3 HOH A 14 314 53 HOH HOH . C 3 HOH A 15 315 78 HOH HOH . C 3 HOH A 16 316 13 HOH HOH . C 3 HOH A 17 317 56 HOH HOH . C 3 HOH A 18 318 97 HOH HOH . C 3 HOH A 19 319 125 HOH HOH . C 3 HOH A 20 320 74 HOH HOH . C 3 HOH A 21 321 59 HOH HOH . C 3 HOH A 22 322 73 HOH HOH . C 3 HOH A 23 323 34 HOH HOH . C 3 HOH A 24 324 110 HOH HOH . C 3 HOH A 25 325 141 HOH HOH . C 3 HOH A 26 326 133 HOH HOH . C 3 HOH A 27 327 153 HOH HOH . C 3 HOH A 28 328 50 HOH HOH . C 3 HOH A 29 329 3 HOH HOH . C 3 HOH A 30 330 139 HOH HOH . C 3 HOH A 31 331 58 HOH HOH . C 3 HOH A 32 332 104 HOH HOH . C 3 HOH A 33 333 2 HOH HOH . C 3 HOH A 34 334 80 HOH HOH . C 3 HOH A 35 335 49 HOH HOH . C 3 HOH A 36 336 16 HOH HOH . C 3 HOH A 37 337 140 HOH HOH . C 3 HOH A 38 338 160 HOH HOH . C 3 HOH A 39 339 93 HOH HOH . C 3 HOH A 40 340 55 HOH HOH . C 3 HOH A 41 341 67 HOH HOH . C 3 HOH A 42 342 69 HOH HOH . C 3 HOH A 43 343 27 HOH HOH . C 3 HOH A 44 344 29 HOH HOH . C 3 HOH A 45 345 23 HOH HOH . C 3 HOH A 46 346 5 HOH HOH . C 3 HOH A 47 347 25 HOH HOH . C 3 HOH A 48 348 22 HOH HOH . C 3 HOH A 49 349 8 HOH HOH . C 3 HOH A 50 350 43 HOH HOH . C 3 HOH A 51 351 21 HOH HOH . C 3 HOH A 52 352 82 HOH HOH . C 3 HOH A 53 353 33 HOH HOH . C 3 HOH A 54 354 102 HOH HOH . C 3 HOH A 55 355 68 HOH HOH . C 3 HOH A 56 356 14 HOH HOH . C 3 HOH A 57 357 70 HOH HOH . C 3 HOH A 58 358 137 HOH HOH . C 3 HOH A 59 359 9 HOH HOH . C 3 HOH A 60 360 76 HOH HOH . C 3 HOH A 61 361 1 HOH HOH . C 3 HOH A 62 362 101 HOH HOH . C 3 HOH A 63 363 136 HOH HOH . C 3 HOH A 64 364 95 HOH HOH . C 3 HOH A 65 365 75 HOH HOH . C 3 HOH A 66 366 44 HOH HOH . C 3 HOH A 67 367 107 HOH HOH . C 3 HOH A 68 368 79 HOH HOH . C 3 HOH A 69 369 88 HOH HOH . C 3 HOH A 70 370 94 HOH HOH . C 3 HOH A 71 371 40 HOH HOH . C 3 HOH A 72 372 4 HOH HOH . C 3 HOH A 73 373 35 HOH HOH . C 3 HOH A 74 374 147 HOH HOH . C 3 HOH A 75 375 120 HOH HOH . C 3 HOH A 76 376 10 HOH HOH . C 3 HOH A 77 377 30 HOH HOH . C 3 HOH A 78 378 7 HOH HOH . C 3 HOH A 79 379 77 HOH HOH . C 3 HOH A 80 380 47 HOH HOH . C 3 HOH A 81 381 42 HOH HOH . C 3 HOH A 82 382 18 HOH HOH . C 3 HOH A 83 383 54 HOH HOH . C 3 HOH A 84 384 113 HOH HOH . C 3 HOH A 85 385 31 HOH HOH . C 3 HOH A 86 386 39 HOH HOH . C 3 HOH A 87 387 52 HOH HOH . C 3 HOH A 88 388 19 HOH HOH . C 3 HOH A 89 389 6 HOH HOH . C 3 HOH A 90 390 105 HOH HOH . C 3 HOH A 91 391 124 HOH HOH . C 3 HOH A 92 392 132 HOH HOH . C 3 HOH A 93 393 143 HOH HOH . C 3 HOH A 94 394 103 HOH HOH . C 3 HOH A 95 395 152 HOH HOH . C 3 HOH A 96 396 130 HOH HOH . C 3 HOH A 97 397 87 HOH HOH . C 3 HOH A 98 398 36 HOH HOH . C 3 HOH A 99 399 46 HOH HOH . C 3 HOH A 100 400 126 HOH HOH . C 3 HOH A 101 401 62 HOH HOH . C 3 HOH A 102 402 92 HOH HOH . C 3 HOH A 103 403 51 HOH HOH . C 3 HOH A 104 404 114 HOH HOH . C 3 HOH A 105 405 138 HOH HOH . C 3 HOH A 106 406 127 HOH HOH . C 3 HOH A 107 407 100 HOH HOH . C 3 HOH A 108 408 20 HOH HOH . C 3 HOH A 109 409 28 HOH HOH . C 3 HOH A 110 410 83 HOH HOH . C 3 HOH A 111 411 57 HOH HOH . C 3 HOH A 112 412 38 HOH HOH . C 3 HOH A 113 413 64 HOH HOH . C 3 HOH A 114 414 116 HOH HOH . C 3 HOH A 115 415 109 HOH HOH . C 3 HOH A 116 416 48 HOH HOH . C 3 HOH A 117 417 108 HOH HOH . C 3 HOH A 118 418 128 HOH HOH . C 3 HOH A 119 419 115 HOH HOH . C 3 HOH A 120 420 24 HOH HOH . C 3 HOH A 121 421 156 HOH HOH . C 3 HOH A 122 422 112 HOH HOH . C 3 HOH A 123 423 91 HOH HOH . C 3 HOH A 124 424 81 HOH HOH . C 3 HOH A 125 425 65 HOH HOH . C 3 HOH A 126 426 155 HOH HOH . C 3 HOH A 127 427 134 HOH HOH . C 3 HOH A 128 428 72 HOH HOH . C 3 HOH A 129 429 131 HOH HOH . C 3 HOH A 130 430 60 HOH HOH . C 3 HOH A 131 431 117 HOH HOH . C 3 HOH A 132 432 111 HOH HOH . C 3 HOH A 133 433 145 HOH HOH . C 3 HOH A 134 434 61 HOH HOH . C 3 HOH A 135 435 90 HOH HOH . C 3 HOH A 136 436 63 HOH HOH . C 3 HOH A 137 437 86 HOH HOH . C 3 HOH A 138 438 142 HOH HOH . C 3 HOH A 139 439 148 HOH HOH . C 3 HOH A 140 440 41 HOH HOH . C 3 HOH A 141 441 32 HOH HOH . C 3 HOH A 142 442 66 HOH HOH . C 3 HOH A 143 443 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SIN . . . B 2 38.481 -7.722 34.296 1 43.35 ? C1 SIN 201 A 1 HETATM 2 O O1 SIN . . . B 2 37.889 -8.816 34.44 1 36.98 ? O1 SIN 201 A 1 HETATM 3 O O2 SIN . . . B 2 38.785 -7.037 35.312 1 37.32 ? O2 SIN 201 A 1 HETATM 4 C C2 SIN . . . B 2 38.82 -7.242 32.903 1 33.65 ? C2 SIN 201 A 1 HETATM 5 C C3 SIN . . . B 2 39.83 -6.098 32.988 1 29.89 ? C3 SIN 201 A 1 HETATM 6 C C4 SIN . . . B 2 40.161 -5.697 31.573 1 33.8 ? C4 SIN 201 A 1 HETATM 7 O O3 SIN . . . B 2 39.225 -5.442 30.775 1 32.56 ? O3 SIN 201 A 1 HETATM 8 O O4 SIN . . . B 2 41.361 -5.654 31.202 1 33.69 ? O4 SIN 201 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #