data_8V36 # _model_server_result.job_id cN7BtpXR3tCWLJsN5Qr9GQ _model_server_result.datetime_utc '2024-11-07 22:43:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8v36 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 8V36 # _exptl.entry_id 8V36 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8V36 _cell.length_a 77.307 _cell.length_b 87.556 _cell.length_c 134.197 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8V36 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 127 A HIS 126 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc2 A OE1 GLN 249 A GLN 248 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc3 A NE2 HIS 252 A HIS 251 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc4 A NE2 HIS 412 A HIS 411 1_555 F ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc5 C ZN ZN . A ZN 501 1_555 G O HOH . A HOH 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc6 C ZN ZN . A ZN 501 1_555 B NE2 HIS 412 B HIS 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc7 C ZN ZN . A ZN 501 1_555 H O HOH . B HOH 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc8 B NE2 HIS 127 B HIS 126 1_555 F ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc9 B OE1 GLN 249 B GLN 248 1_555 F ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc10 B NE2 HIS 252 B HIS 251 1_555 F ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc11 F ZN ZN . B ZN 502 1_555 H O HOH . B HOH 632 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc12 F ZN ZN . B ZN 502 1_555 H O HOH . B HOH 636 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 237 n n PA O2A NAI sing 238 n n PA O5B NAI sing 239 n n PA O3 NAI sing 240 n n O2A HOA2 NAI sing 241 n n O5B C5B NAI sing 242 n n C5B C4B NAI sing 243 n n C5B H51A NAI sing 244 n n C5B H52A NAI sing 245 n n C4B O4B NAI sing 246 n n C4B C3B NAI sing 247 n n C4B H4B NAI sing 248 n n O4B C1B NAI sing 249 n n C3B O3B NAI sing 250 n n C3B C2B NAI sing 251 n n C3B H3B NAI sing 252 n n O3B HO3A NAI sing 253 n n C2B O2B NAI sing 254 n n C2B C1B NAI sing 255 n n C2B H2B NAI sing 256 n n O2B HO2A NAI sing 257 n n C1B N9A NAI sing 258 n n C1B H1B NAI sing 259 n n N9A C8A NAI sing 260 n y N9A C4A NAI sing 261 n y C8A N7A NAI doub 262 n y C8A H8A NAI sing 263 n n N7A C5A NAI sing 264 n y C5A C6A NAI sing 265 n y C5A C4A NAI doub 266 n y C6A N6A NAI sing 267 n n C6A N1A NAI doub 268 n y N6A H61A NAI sing 269 n n N6A H62A NAI sing 270 n n N1A C2A NAI sing 271 n y C2A N3A NAI doub 272 n y C2A H2A NAI sing 273 n n N3A C4A NAI sing 274 n y O3 PN NAI sing 275 n n PN O1N NAI sing 276 n n PN O2N NAI doub 277 n n PN O5D NAI sing 278 n n O1N HO1N NAI sing 279 n n O5D C5D NAI sing 280 n n C5D C4D NAI sing 281 n n C5D H51N NAI sing 282 n n C5D H52N NAI sing 283 n n C4D O4D NAI sing 284 n n C4D C3D NAI sing 285 n n C4D H4D NAI sing 286 n n O4D C1D NAI sing 287 n n C3D O3D NAI sing 288 n n C3D C2D NAI sing 289 n n C3D H3D NAI sing 290 n n O3D HO3N NAI sing 291 n n C2D O2D NAI sing 292 n n C2D C1D NAI sing 293 n n C2D H2D NAI sing 294 n n O2D HO2N NAI sing 295 n n C1D N1N NAI sing 296 n n C1D H1D NAI sing 297 n n N1N C2N NAI sing 298 n n N1N C6N NAI sing 299 n n C2N C3N NAI doub 300 n n C2N H2N NAI sing 301 n n C3N C7N NAI sing 302 n n C3N C4N NAI sing 303 n n C7N O7N NAI doub 304 n n C7N N7N NAI sing 305 n n N7N H71N NAI sing 306 n n N7N H72N NAI sing 307 n n C4N C5N NAI sing 308 n n C4N H4N NAI sing 309 n n C4N H42N NAI sing 310 n n C5N C6N NAI doub 311 n n C5N H5N NAI sing 312 n n C6N H6N NAI sing 313 n n # _atom_sites.entry_id 8V36 _atom_sites.fract_transf_matrix[1][1] 0.012935 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011421 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007452 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 501 501 ZN ZN . D 3 NAI A 1 502 502 NAI NAI . E 3 NAI B 1 501 502 NAI NAI . F 2 ZN B 1 502 501 ZN ZN . G 4 HOH A 1 601 39 HOH HOH . G 4 HOH A 2 602 14 HOH HOH . G 4 HOH A 3 603 10 HOH HOH . G 4 HOH A 4 604 1 HOH HOH . G 4 HOH A 5 605 27 HOH HOH . G 4 HOH A 6 606 65 HOH HOH . G 4 HOH A 7 607 3 HOH HOH . G 4 HOH A 8 608 4 HOH HOH . G 4 HOH A 9 609 30 HOH HOH . G 4 HOH A 10 610 47 HOH HOH . G 4 HOH A 11 611 38 HOH HOH . G 4 HOH A 12 612 60 HOH HOH . G 4 HOH A 13 613 9 HOH HOH . G 4 HOH A 14 614 29 HOH HOH . G 4 HOH A 15 615 15 HOH HOH . G 4 HOH A 16 616 66 HOH HOH . G 4 HOH A 17 617 44 HOH HOH . G 4 HOH A 18 618 79 HOH HOH . G 4 HOH A 19 619 26 HOH HOH . G 4 HOH A 20 620 59 HOH HOH . G 4 HOH A 21 621 25 HOH HOH . G 4 HOH A 22 622 8 HOH HOH . G 4 HOH A 23 623 2 HOH HOH . G 4 HOH A 24 624 13 HOH HOH . G 4 HOH A 25 625 49 HOH HOH . G 4 HOH A 26 626 24 HOH HOH . G 4 HOH A 27 627 68 HOH HOH . G 4 HOH A 28 628 18 HOH HOH . G 4 HOH A 29 629 78 HOH HOH . G 4 HOH A 30 630 19 HOH HOH . G 4 HOH A 31 631 45 HOH HOH . G 4 HOH A 32 632 73 HOH HOH . G 4 HOH A 33 633 67 HOH HOH . G 4 HOH A 34 634 28 HOH HOH . G 4 HOH A 35 635 75 HOH HOH . G 4 HOH A 36 636 58 HOH HOH . H 4 HOH B 1 601 34 HOH HOH . H 4 HOH B 2 602 76 HOH HOH . H 4 HOH B 3 603 22 HOH HOH . H 4 HOH B 4 604 23 HOH HOH . H 4 HOH B 5 605 64 HOH HOH . H 4 HOH B 6 606 12 HOH HOH . H 4 HOH B 7 607 35 HOH HOH . H 4 HOH B 8 608 21 HOH HOH . H 4 HOH B 9 609 41 HOH HOH . H 4 HOH B 10 610 31 HOH HOH . H 4 HOH B 11 611 43 HOH HOH . H 4 HOH B 12 612 40 HOH HOH . H 4 HOH B 13 613 16 HOH HOH . H 4 HOH B 14 614 50 HOH HOH . H 4 HOH B 15 615 32 HOH HOH . H 4 HOH B 16 616 7 HOH HOH . H 4 HOH B 17 617 5 HOH HOH . H 4 HOH B 18 618 20 HOH HOH . H 4 HOH B 19 619 51 HOH HOH . H 4 HOH B 20 620 42 HOH HOH . H 4 HOH B 21 621 53 HOH HOH . H 4 HOH B 22 622 37 HOH HOH . H 4 HOH B 23 623 70 HOH HOH . H 4 HOH B 24 624 61 HOH HOH . H 4 HOH B 25 625 62 HOH HOH . H 4 HOH B 26 626 11 HOH HOH . H 4 HOH B 27 627 71 HOH HOH . H 4 HOH B 28 628 52 HOH HOH . H 4 HOH B 29 629 6 HOH HOH . H 4 HOH B 30 630 33 HOH HOH . H 4 HOH B 31 631 17 HOH HOH . H 4 HOH B 32 632 82 HOH HOH . H 4 HOH B 33 633 55 HOH HOH . H 4 HOH B 34 634 46 HOH HOH . H 4 HOH B 35 635 80 HOH HOH . H 4 HOH B 36 636 81 HOH HOH . H 4 HOH B 37 637 36 HOH HOH . H 4 HOH B 38 638 48 HOH HOH . H 4 HOH B 39 639 57 HOH HOH . H 4 HOH B 40 640 69 HOH HOH . H 4 HOH B 41 641 72 HOH HOH . H 4 HOH B 42 642 56 HOH HOH . H 4 HOH B 43 643 77 HOH HOH . H 4 HOH B 44 644 74 HOH HOH . H 4 HOH B 45 645 63 HOH HOH . H 4 HOH B 46 646 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . D 3 22.484 -13.85 -7.916 1 60.86 0 PA NAI 502 A 1 HETATM 2 O O1A NAI . . . D 3 21.172 -13.288 -7.48 1 61.15 0 O1A NAI 502 A 1 HETATM 3 O O2A NAI . . . D 3 22.502 -15.151 -8.645 1 65.22 0 O2A NAI 502 A 1 HETATM 4 O O5B NAI . . . D 3 23.485 -13.968 -6.677 1 64.69 0 O5B NAI 502 A 1 HETATM 5 C C5B NAI . . . D 3 23.621 -12.9 -5.715 1 62.39 0 C5B NAI 502 A 1 HETATM 6 C C4B NAI . . . D 3 23.755 -13.532 -4.354 1 65.4 0 C4B NAI 502 A 1 HETATM 7 O O4B NAI . . . D 3 24.959 -14.341 -4.34 1 62.07 0 O4B NAI 502 A 1 HETATM 8 C C3B NAI . . . D 3 23.865 -12.565 -3.164 1 65.85 0 C3B NAI 502 A 1 HETATM 9 O O3B NAI . . . D 3 22.954 -12.885 -2.122 1 65.53 0 O3B NAI 502 A 1 HETATM 10 C C2B NAI . . . D 3 25.289 -12.779 -2.65 1 68.6 0 C2B NAI 502 A 1 HETATM 11 O O2B NAI . . . D 3 25.364 -12.638 -1.25 1 73.77 0 O2B NAI 502 A 1 HETATM 12 C C1B NAI . . . D 3 25.568 -14.213 -3.082 1 67.17 0 C1B NAI 502 A 1 HETATM 13 N N9A NAI . . . D 3 26.992 -14.491 -3.206 1 68.32 0 N9A NAI 502 A 1 HETATM 14 C C8A NAI . . . D 3 27.867 -13.894 -4.079 1 67.74 0 C8A NAI 502 A 1 HETATM 15 N N7A NAI . . . D 3 29.099 -14.319 -3.95 1 68.35 0 N7A NAI 502 A 1 HETATM 16 C C5A NAI . . . D 3 29.037 -15.239 -2.913 1 63.78 0 C5A NAI 502 A 1 HETATM 17 C C6A NAI . . . D 3 30.021 -16.021 -2.285 1 62.86 0 C6A NAI 502 A 1 HETATM 18 N N6A NAI . . . D 3 31.303 -16.008 -2.635 1 67.46 0 N6A NAI 502 A 1 HETATM 19 N N1A NAI . . . D 3 29.626 -16.836 -1.278 1 60.91 0 N1A NAI 502 A 1 HETATM 20 C C2A NAI . . . D 3 28.333 -16.842 -0.93 1 57.9 0 C2A NAI 502 A 1 HETATM 21 N N3A NAI . . . D 3 27.324 -16.143 -1.439 1 59 0 N3A NAI 502 A 1 HETATM 22 C C4A NAI . . . D 3 27.743 -15.352 -2.441 1 64.1 0 C4A NAI 502 A 1 HETATM 23 O O3 NAI . . . D 3 23.217 -12.715 -8.774 1 66.93 0 O3 NAI 502 A 1 HETATM 24 P PN NAI . . . D 3 24.678 -12.552 -9.417 1 69.1 0 PN NAI 502 A 1 HETATM 25 O O1N NAI . . . D 3 25.716 -12.959 -8.419 1 56.97 0 O1N NAI 502 A 1 HETATM 26 O O2N NAI . . . D 3 24.733 -11.197 -10.04 1 70.33 0 O2N NAI 502 A 1 HETATM 27 O O5D NAI . . . D 3 24.622 -13.655 -10.58 1 80.26 0 O5D NAI 502 A 1 HETATM 28 C C5D NAI . . . D 3 23.709 -13.51 -11.696 1 80.91 0 C5D NAI 502 A 1 HETATM 29 C C4D NAI . . . D 3 23.981 -14.619 -12.682 1 88.65 0 C4D NAI 502 A 1 HETATM 30 O O4D NAI . . . D 3 22.725 -15.135 -13.183 1 93.2 0 O4D NAI 502 A 1 HETATM 31 C C3D NAI . . . D 3 24.79 -14.23 -13.926 1 90.98 0 C3D NAI 502 A 1 HETATM 32 O O3D NAI . . . D 3 26.179 -14.437 -13.701 1 91.76 0 O3D NAI 502 A 1 HETATM 33 C C2D NAI . . . D 3 24.22 -15.156 -15.005 1 93.04 0 C2D NAI 502 A 1 HETATM 34 O O2D NAI . . . D 3 25.163 -16.162 -15.342 1 99.02 0 O2D NAI 502 A 1 HETATM 35 C C1D NAI . . . D 3 22.946 -15.771 -14.416 1 92.04 0 C1D NAI 502 A 1 HETATM 36 N N1N NAI . . . D 3 21.745 -15.551 -15.275 0.5 84.88 0 N1N NAI 502 A 1 HETATM 37 C C2N NAI . . . D 3 21.82 -15.761 -16.533 0 60 0 C2N NAI 502 A 1 HETATM 38 C C3N NAI . . . D 3 21.298 -14.918 -17.464 0 60 0 C3N NAI 502 A 1 HETATM 39 C C7N NAI . . . D 3 21.802 -15.029 -18.849 0 60 0 C7N NAI 502 A 1 HETATM 40 O O7N NAI . . . D 3 21.416 -15.952 -19.572 0 60 0 O7N NAI 502 A 1 HETATM 41 N N7N NAI . . . D 3 22.665 -14.116 -19.27 0 60 0 N7N NAI 502 A 1 HETATM 42 C C4N NAI . . . D 3 20.268 -13.94 -17.012 0 60 0 C4N NAI 502 A 1 HETATM 43 C C5N NAI . . . D 3 20.101 -13.872 -15.543 0 60 0 C5N NAI 502 A 1 HETATM 44 C C6N NAI . . . D 3 20.767 -14.675 -14.742 0 60 0 C6N NAI 502 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 44 #