data_8V3N
#
_model_server_result.job_id            qmh0cSsuDFneAN5m-OHWVw 
_model_server_result.datetime_utc      '2024-11-15 02:58:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8v3n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":703}' 
#
_entry.id    8V3N 
#
_exptl.entry_id    8V3N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              134.087 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            D-MALATE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8V3N 
_cell.length_a            65.114 
_cell.length_b            80.414 
_cell.length_c            103.229 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8V3N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 252 A HIS 252 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc2 A OE1 GLU 255 A GLU 255 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc3 A OE2 GLU 255 A GLU 255 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? 
metalc ? metalc4 A ND1 HIS 353 A HIS 434 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc5 B ZN ZN . A ZN 701 1_555 E O03 A1AAG . A A1AAG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? 
#
_chem_comp.formula           'C4 H6 O5' 
_chem_comp.formula_weight    134.087 
_chem_comp.id                MLT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              D-MALATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(2R)-2-HYDROXYBUTANEDIOIC ACID;2-HYDROXY-SUCCINIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 MLT doub 286 n n 
C1 O2 MLT sing 287 n n 
C1 C2 MLT sing 288 n n 
C2 O3 MLT sing 289 n n 
C2 C3 MLT sing 290 n n 
C2 H2 MLT sing 291 n n 
O3 HO3 MLT sing 292 n n 
C3 C4 MLT sing 293 n n 
C3 H31 MLT sing 294 n n 
C3 H32 MLT sing 295 n n 
C4 O4 MLT doub 296 n n 
C4 O5 MLT sing 297 n n 
O5 HO5 MLT sing 298 n n 
O2 H6 MLT sing 299 n n 
#
_atom_sites.entry_id                     8V3N 
_atom_sites.fract_transf_matrix[1][1]    0.015358 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012436 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009687 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 701 1 ZN ZN . 
C 3 MLT A 1 702 701 MLT MLT . 
D 3 MLT A 1 703 702 MLT MLT . 
E 4 A1AAG A 1 704 701 A1AAG I . 
F 5 HOH A 1 801 175 HOH HOH . 
F 5 HOH A 2 802 85 HOH HOH . 
F 5 HOH A 3 803 15 HOH HOH . 
F 5 HOH A 4 804 20 HOH HOH . 
F 5 HOH A 5 805 163 HOH HOH . 
F 5 HOH A 6 806 11 HOH HOH . 
F 5 HOH A 7 807 145 HOH HOH . 
F 5 HOH A 8 808 192 HOH HOH . 
F 5 HOH A 9 809 206 HOH HOH . 
F 5 HOH A 10 810 19 HOH HOH . 
F 5 HOH A 11 811 51 HOH HOH . 
F 5 HOH A 12 812 14 HOH HOH . 
F 5 HOH A 13 813 109 HOH HOH . 
F 5 HOH A 14 814 114 HOH HOH . 
F 5 HOH A 15 815 28 HOH HOH . 
F 5 HOH A 16 816 74 HOH HOH . 
F 5 HOH A 17 817 135 HOH HOH . 
F 5 HOH A 18 818 75 HOH HOH . 
F 5 HOH A 19 819 107 HOH HOH . 
F 5 HOH A 20 820 87 HOH HOH . 
F 5 HOH A 21 821 43 HOH HOH . 
F 5 HOH A 22 822 200 HOH HOH . 
F 5 HOH A 23 823 12 HOH HOH . 
F 5 HOH A 24 824 41 HOH HOH . 
F 5 HOH A 25 825 183 HOH HOH . 
F 5 HOH A 26 826 27 HOH HOH . 
F 5 HOH A 27 827 86 HOH HOH . 
F 5 HOH A 28 828 6 HOH HOH . 
F 5 HOH A 29 829 160 HOH HOH . 
F 5 HOH A 30 830 102 HOH HOH . 
F 5 HOH A 31 831 2 HOH HOH . 
F 5 HOH A 32 832 81 HOH HOH . 
F 5 HOH A 33 833 180 HOH HOH . 
F 5 HOH A 34 834 54 HOH HOH . 
F 5 HOH A 35 835 4 HOH HOH . 
F 5 HOH A 36 836 108 HOH HOH . 
F 5 HOH A 37 837 37 HOH HOH . 
F 5 HOH A 38 838 3 HOH HOH . 
F 5 HOH A 39 839 164 HOH HOH . 
F 5 HOH A 40 840 146 HOH HOH . 
F 5 HOH A 41 841 60 HOH HOH . 
F 5 HOH A 42 842 170 HOH HOH . 
F 5 HOH A 43 843 38 HOH HOH . 
F 5 HOH A 44 844 128 HOH HOH . 
F 5 HOH A 45 845 79 HOH HOH . 
F 5 HOH A 46 846 134 HOH HOH . 
F 5 HOH A 47 847 208 HOH HOH . 
F 5 HOH A 48 848 66 HOH HOH . 
F 5 HOH A 49 849 22 HOH HOH . 
F 5 HOH A 50 850 168 HOH HOH . 
F 5 HOH A 51 851 26 HOH HOH . 
F 5 HOH A 52 852 111 HOH HOH . 
F 5 HOH A 53 853 7 HOH HOH . 
F 5 HOH A 54 854 47 HOH HOH . 
F 5 HOH A 55 855 17 HOH HOH . 
F 5 HOH A 56 856 36 HOH HOH . 
F 5 HOH A 57 857 61 HOH HOH . 
F 5 HOH A 58 858 147 HOH HOH . 
F 5 HOH A 59 859 80 HOH HOH . 
F 5 HOH A 60 860 136 HOH HOH . 
F 5 HOH A 61 861 53 HOH HOH . 
F 5 HOH A 62 862 68 HOH HOH . 
F 5 HOH A 63 863 144 HOH HOH . 
F 5 HOH A 64 864 90 HOH HOH . 
F 5 HOH A 65 865 169 HOH HOH . 
F 5 HOH A 66 866 119 HOH HOH . 
F 5 HOH A 67 867 194 HOH HOH . 
F 5 HOH A 68 868 202 HOH HOH . 
F 5 HOH A 69 869 8 HOH HOH . 
F 5 HOH A 70 870 44 HOH HOH . 
F 5 HOH A 71 871 173 HOH HOH . 
F 5 HOH A 72 872 201 HOH HOH . 
F 5 HOH A 73 873 151 HOH HOH . 
F 5 HOH A 74 874 193 HOH HOH . 
F 5 HOH A 75 875 78 HOH HOH . 
F 5 HOH A 76 876 73 HOH HOH . 
F 5 HOH A 77 877 172 HOH HOH . 
F 5 HOH A 78 878 48 HOH HOH . 
F 5 HOH A 79 879 162 HOH HOH . 
F 5 HOH A 80 880 143 HOH HOH . 
F 5 HOH A 81 881 39 HOH HOH . 
F 5 HOH A 82 882 24 HOH HOH . 
F 5 HOH A 83 883 21 HOH HOH . 
F 5 HOH A 84 884 45 HOH HOH . 
F 5 HOH A 85 885 13 HOH HOH . 
F 5 HOH A 86 886 191 HOH HOH . 
F 5 HOH A 87 887 25 HOH HOH . 
F 5 HOH A 88 888 50 HOH HOH . 
F 5 HOH A 89 889 156 HOH HOH . 
F 5 HOH A 90 890 46 HOH HOH . 
F 5 HOH A 91 891 57 HOH HOH . 
F 5 HOH A 92 892 10 HOH HOH . 
F 5 HOH A 93 893 55 HOH HOH . 
F 5 HOH A 94 894 1 HOH HOH . 
F 5 HOH A 95 895 35 HOH HOH . 
F 5 HOH A 96 896 88 HOH HOH . 
F 5 HOH A 97 897 77 HOH HOH . 
F 5 HOH A 98 898 95 HOH HOH . 
F 5 HOH A 99 899 5 HOH HOH . 
F 5 HOH A 100 900 129 HOH HOH . 
F 5 HOH A 101 901 16 HOH HOH . 
F 5 HOH A 102 902 34 HOH HOH . 
F 5 HOH A 103 903 59 HOH HOH . 
F 5 HOH A 104 904 31 HOH HOH . 
F 5 HOH A 105 905 42 HOH HOH . 
F 5 HOH A 106 906 124 HOH HOH . 
F 5 HOH A 107 907 58 HOH HOH . 
F 5 HOH A 108 908 203 HOH HOH . 
F 5 HOH A 109 909 23 HOH HOH . 
F 5 HOH A 110 910 125 HOH HOH . 
F 5 HOH A 111 911 40 HOH HOH . 
F 5 HOH A 112 912 94 HOH HOH . 
F 5 HOH A 113 913 113 HOH HOH . 
F 5 HOH A 114 914 9 HOH HOH . 
F 5 HOH A 115 915 154 HOH HOH . 
F 5 HOH A 116 916 84 HOH HOH . 
F 5 HOH A 117 917 49 HOH HOH . 
F 5 HOH A 118 918 56 HOH HOH . 
F 5 HOH A 119 919 157 HOH HOH . 
F 5 HOH A 120 920 140 HOH HOH . 
F 5 HOH A 121 921 62 HOH HOH . 
F 5 HOH A 122 922 63 HOH HOH . 
F 5 HOH A 123 923 97 HOH HOH . 
F 5 HOH A 124 924 72 HOH HOH . 
F 5 HOH A 125 925 195 HOH HOH . 
F 5 HOH A 126 926 127 HOH HOH . 
F 5 HOH A 127 927 18 HOH HOH . 
F 5 HOH A 128 928 99 HOH HOH . 
F 5 HOH A 129 929 138 HOH HOH . 
F 5 HOH A 130 930 139 HOH HOH . 
F 5 HOH A 131 931 71 HOH HOH . 
F 5 HOH A 132 932 33 HOH HOH . 
F 5 HOH A 133 933 197 HOH HOH . 
F 5 HOH A 134 934 176 HOH HOH . 
F 5 HOH A 135 935 100 HOH HOH . 
F 5 HOH A 136 936 32 HOH HOH . 
F 5 HOH A 137 937 199 HOH HOH . 
F 5 HOH A 138 938 65 HOH HOH . 
F 5 HOH A 139 939 70 HOH HOH . 
F 5 HOH A 140 940 189 HOH HOH . 
F 5 HOH A 141 941 91 HOH HOH . 
F 5 HOH A 142 942 52 HOH HOH . 
F 5 HOH A 143 943 148 HOH HOH . 
F 5 HOH A 144 944 205 HOH HOH . 
F 5 HOH A 145 945 76 HOH HOH . 
F 5 HOH A 146 946 120 HOH HOH . 
F 5 HOH A 147 947 98 HOH HOH . 
F 5 HOH A 148 948 166 HOH HOH . 
F 5 HOH A 149 949 149 HOH HOH . 
F 5 HOH A 150 950 29 HOH HOH . 
F 5 HOH A 151 951 30 HOH HOH . 
F 5 HOH A 152 952 153 HOH HOH . 
F 5 HOH A 153 953 150 HOH HOH . 
F 5 HOH A 154 954 186 HOH HOH . 
F 5 HOH A 155 955 158 HOH HOH . 
F 5 HOH A 156 956 64 HOH HOH . 
F 5 HOH A 157 957 101 HOH HOH . 
F 5 HOH A 158 958 126 HOH HOH . 
F 5 HOH A 159 959 159 HOH HOH . 
F 5 HOH A 160 960 182 HOH HOH . 
F 5 HOH A 161 961 198 HOH HOH . 
F 5 HOH A 162 962 178 HOH HOH . 
F 5 HOH A 163 963 177 HOH HOH . 
F 5 HOH A 164 964 137 HOH HOH . 
F 5 HOH A 165 965 130 HOH HOH . 
F 5 HOH A 166 966 69 HOH HOH . 
F 5 HOH A 167 967 152 HOH HOH . 
F 5 HOH A 168 968 103 HOH HOH . 
F 5 HOH A 169 969 179 HOH HOH . 
F 5 HOH A 170 970 196 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLT . . . D 3 -6.11 -16.878 35.539 0.76 53 ? C1 MLT 703 A 1 
HETATM 2 O O1 MLT . . . D 3 -6.81 -17.922 35.608 0.76 54.71 -1 O1 MLT 703 A 1 
HETATM 3 O O2 MLT . . . D 3 -5.926 -16.176 36.568 0.76 57.56 ? O2 MLT 703 A 1 
HETATM 4 C C2 MLT . . . D 3 -5.482 -16.467 34.209 0.76 58.39 ? C2 MLT 703 A 1 
HETATM 5 O O3 MLT . . . D 3 -4.214 -15.918 34.443 0.76 52.06 ? O3 MLT 703 A 1 
HETATM 6 C C3 MLT . . . D 3 -6.367 -15.429 33.521 0.76 50.07 ? C3 MLT 703 A 1 
HETATM 7 C C4 MLT . . . D 3 -5.647 -14.886 32.288 0.76 53.48 ? C4 MLT 703 A 1 
HETATM 8 O O4 MLT . . . D 3 -6.28 -14.218 31.428 0.76 46.79 -1 O4 MLT 703 A 1 
HETATM 9 O O5 MLT . . . D 3 -4.416 -15.104 32.135 0.76 61.78 ? O5 MLT 703 A 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           244 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           9 
#