data_8V3N # _model_server_result.job_id W5BQX1zSNmzS4o1nvscsOg _model_server_result.datetime_utc '2024-11-15 03:01:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8v3n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":704}' # _entry.id 8V3N # _exptl.entry_id 8V3N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 380.331 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-{[(S)-[(3S)-3-acetamido-4-(ethylamino)-4-oxobutyl](hydroxy)phosphoryl]methyl}pentanedioic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8V3N _cell.length_a 65.114 _cell.length_b 80.414 _cell.length_c 103.229 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8V3N _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 252 A HIS 252 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc2 A OE1 GLU 255 A GLU 255 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc3 A OE2 GLU 255 A GLU 255 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc4 A ND1 HIS 353 A HIS 434 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc5 B ZN ZN . A ZN 701 1_555 E O03 A1AAG . A A1AAG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? # _chem_comp.formula 'C14 H25 N2 O8 P' _chem_comp.formula_weight 380.331 _chem_comp.id A1AAG _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-{[(S)-[(3S)-3-acetamido-4-(ethylamino)-4-oxobutyl](hydroxy)phosphoryl]methyl}pentanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C13 A1AAG sing 1 n n O08 C13 A1AAG doub 2 n n C13 N02 A1AAG sing 3 n n O04 C11 A1AAG doub 4 n n N02 C04 A1AAG sing 5 n n C11 O05 A1AAG sing 6 n n C11 C10 A1AAG sing 7 n n C04 C05 A1AAG sing 8 n n C04 C03 A1AAG sing 9 n n C09 C10 A1AAG sing 10 n n C09 C08 A1AAG sing 11 n n C05 C06 A1AAG sing 12 n n C07 C08 A1AAG sing 13 n n C07 P01 A1AAG sing 14 n n C06 P01 A1AAG sing 15 n n C03 O01 A1AAG doub 16 n n C03 N01 A1AAG sing 17 n n C08 C12 A1AAG sing 18 n n P01 O03 A1AAG doub 19 n n P01 O02 A1AAG sing 20 n n N01 C02 A1AAG sing 21 n n O06 C12 A1AAG doub 22 n n C12 O07 A1AAG sing 23 n n C01 C02 A1AAG sing 24 n n C01 H1 A1AAG sing 25 n n C01 H2 A1AAG sing 26 n n C01 H3 A1AAG sing 27 n n C02 H4 A1AAG sing 28 n n C02 H5 A1AAG sing 29 n n C04 H6 A1AAG sing 30 n n C05 H7 A1AAG sing 31 n n C05 H8 A1AAG sing 32 n n C06 H9 A1AAG sing 33 n n C06 H10 A1AAG sing 34 n n C07 H11 A1AAG sing 35 n n C07 H12 A1AAG sing 36 n n C08 H13 A1AAG sing 37 n n C09 H14 A1AAG sing 38 n n C09 H15 A1AAG sing 39 n n C10 H16 A1AAG sing 40 n n C10 H17 A1AAG sing 41 n n C14 H18 A1AAG sing 42 n n C14 H19 A1AAG sing 43 n n C14 H20 A1AAG sing 44 n n N01 H21 A1AAG sing 45 n n N02 H22 A1AAG sing 46 n n O02 H23 A1AAG sing 47 n n O05 H24 A1AAG sing 48 n n O07 H25 A1AAG sing 49 n n # _atom_sites.entry_id 8V3N _atom_sites.fract_transf_matrix[1][1] 0.015358 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012436 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009687 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 701 1 ZN ZN . C 3 MLT A 1 702 701 MLT MLT . D 3 MLT A 1 703 702 MLT MLT . E 4 A1AAG A 1 704 701 A1AAG I . F 5 HOH A 1 801 175 HOH HOH . F 5 HOH A 2 802 85 HOH HOH . F 5 HOH A 3 803 15 HOH HOH . F 5 HOH A 4 804 20 HOH HOH . F 5 HOH A 5 805 163 HOH HOH . F 5 HOH A 6 806 11 HOH HOH . F 5 HOH A 7 807 145 HOH HOH . F 5 HOH A 8 808 192 HOH HOH . F 5 HOH A 9 809 206 HOH HOH . F 5 HOH A 10 810 19 HOH HOH . F 5 HOH A 11 811 51 HOH HOH . F 5 HOH A 12 812 14 HOH HOH . F 5 HOH A 13 813 109 HOH HOH . F 5 HOH A 14 814 114 HOH HOH . F 5 HOH A 15 815 28 HOH HOH . F 5 HOH A 16 816 74 HOH HOH . F 5 HOH A 17 817 135 HOH HOH . F 5 HOH A 18 818 75 HOH HOH . F 5 HOH A 19 819 107 HOH HOH . F 5 HOH A 20 820 87 HOH HOH . F 5 HOH A 21 821 43 HOH HOH . F 5 HOH A 22 822 200 HOH HOH . F 5 HOH A 23 823 12 HOH HOH . F 5 HOH A 24 824 41 HOH HOH . F 5 HOH A 25 825 183 HOH HOH . F 5 HOH A 26 826 27 HOH HOH . F 5 HOH A 27 827 86 HOH HOH . F 5 HOH A 28 828 6 HOH HOH . F 5 HOH A 29 829 160 HOH HOH . F 5 HOH A 30 830 102 HOH HOH . F 5 HOH A 31 831 2 HOH HOH . F 5 HOH A 32 832 81 HOH HOH . F 5 HOH A 33 833 180 HOH HOH . F 5 HOH A 34 834 54 HOH HOH . F 5 HOH A 35 835 4 HOH HOH . F 5 HOH A 36 836 108 HOH HOH . F 5 HOH A 37 837 37 HOH HOH . F 5 HOH A 38 838 3 HOH HOH . F 5 HOH A 39 839 164 HOH HOH . F 5 HOH A 40 840 146 HOH HOH . F 5 HOH A 41 841 60 HOH HOH . F 5 HOH A 42 842 170 HOH HOH . F 5 HOH A 43 843 38 HOH HOH . F 5 HOH A 44 844 128 HOH HOH . F 5 HOH A 45 845 79 HOH HOH . F 5 HOH A 46 846 134 HOH HOH . F 5 HOH A 47 847 208 HOH HOH . F 5 HOH A 48 848 66 HOH HOH . F 5 HOH A 49 849 22 HOH HOH . F 5 HOH A 50 850 168 HOH HOH . F 5 HOH A 51 851 26 HOH HOH . F 5 HOH A 52 852 111 HOH HOH . F 5 HOH A 53 853 7 HOH HOH . F 5 HOH A 54 854 47 HOH HOH . F 5 HOH A 55 855 17 HOH HOH . F 5 HOH A 56 856 36 HOH HOH . F 5 HOH A 57 857 61 HOH HOH . F 5 HOH A 58 858 147 HOH HOH . F 5 HOH A 59 859 80 HOH HOH . F 5 HOH A 60 860 136 HOH HOH . F 5 HOH A 61 861 53 HOH HOH . F 5 HOH A 62 862 68 HOH HOH . F 5 HOH A 63 863 144 HOH HOH . F 5 HOH A 64 864 90 HOH HOH . F 5 HOH A 65 865 169 HOH HOH . F 5 HOH A 66 866 119 HOH HOH . F 5 HOH A 67 867 194 HOH HOH . F 5 HOH A 68 868 202 HOH HOH . F 5 HOH A 69 869 8 HOH HOH . F 5 HOH A 70 870 44 HOH HOH . F 5 HOH A 71 871 173 HOH HOH . F 5 HOH A 72 872 201 HOH HOH . F 5 HOH A 73 873 151 HOH HOH . F 5 HOH A 74 874 193 HOH HOH . F 5 HOH A 75 875 78 HOH HOH . F 5 HOH A 76 876 73 HOH HOH . F 5 HOH A 77 877 172 HOH HOH . F 5 HOH A 78 878 48 HOH HOH . F 5 HOH A 79 879 162 HOH HOH . F 5 HOH A 80 880 143 HOH HOH . F 5 HOH A 81 881 39 HOH HOH . F 5 HOH A 82 882 24 HOH HOH . F 5 HOH A 83 883 21 HOH HOH . F 5 HOH A 84 884 45 HOH HOH . F 5 HOH A 85 885 13 HOH HOH . F 5 HOH A 86 886 191 HOH HOH . F 5 HOH A 87 887 25 HOH HOH . F 5 HOH A 88 888 50 HOH HOH . F 5 HOH A 89 889 156 HOH HOH . F 5 HOH A 90 890 46 HOH HOH . F 5 HOH A 91 891 57 HOH HOH . F 5 HOH A 92 892 10 HOH HOH . F 5 HOH A 93 893 55 HOH HOH . F 5 HOH A 94 894 1 HOH HOH . F 5 HOH A 95 895 35 HOH HOH . F 5 HOH A 96 896 88 HOH HOH . F 5 HOH A 97 897 77 HOH HOH . F 5 HOH A 98 898 95 HOH HOH . F 5 HOH A 99 899 5 HOH HOH . F 5 HOH A 100 900 129 HOH HOH . F 5 HOH A 101 901 16 HOH HOH . F 5 HOH A 102 902 34 HOH HOH . F 5 HOH A 103 903 59 HOH HOH . F 5 HOH A 104 904 31 HOH HOH . F 5 HOH A 105 905 42 HOH HOH . F 5 HOH A 106 906 124 HOH HOH . F 5 HOH A 107 907 58 HOH HOH . F 5 HOH A 108 908 203 HOH HOH . F 5 HOH A 109 909 23 HOH HOH . F 5 HOH A 110 910 125 HOH HOH . F 5 HOH A 111 911 40 HOH HOH . F 5 HOH A 112 912 94 HOH HOH . F 5 HOH A 113 913 113 HOH HOH . F 5 HOH A 114 914 9 HOH HOH . F 5 HOH A 115 915 154 HOH HOH . F 5 HOH A 116 916 84 HOH HOH . F 5 HOH A 117 917 49 HOH HOH . F 5 HOH A 118 918 56 HOH HOH . F 5 HOH A 119 919 157 HOH HOH . F 5 HOH A 120 920 140 HOH HOH . F 5 HOH A 121 921 62 HOH HOH . F 5 HOH A 122 922 63 HOH HOH . F 5 HOH A 123 923 97 HOH HOH . F 5 HOH A 124 924 72 HOH HOH . F 5 HOH A 125 925 195 HOH HOH . F 5 HOH A 126 926 127 HOH HOH . F 5 HOH A 127 927 18 HOH HOH . F 5 HOH A 128 928 99 HOH HOH . F 5 HOH A 129 929 138 HOH HOH . F 5 HOH A 130 930 139 HOH HOH . F 5 HOH A 131 931 71 HOH HOH . F 5 HOH A 132 932 33 HOH HOH . F 5 HOH A 133 933 197 HOH HOH . F 5 HOH A 134 934 176 HOH HOH . F 5 HOH A 135 935 100 HOH HOH . F 5 HOH A 136 936 32 HOH HOH . F 5 HOH A 137 937 199 HOH HOH . F 5 HOH A 138 938 65 HOH HOH . F 5 HOH A 139 939 70 HOH HOH . F 5 HOH A 140 940 189 HOH HOH . F 5 HOH A 141 941 91 HOH HOH . F 5 HOH A 142 942 52 HOH HOH . F 5 HOH A 143 943 148 HOH HOH . F 5 HOH A 144 944 205 HOH HOH . F 5 HOH A 145 945 76 HOH HOH . F 5 HOH A 146 946 120 HOH HOH . F 5 HOH A 147 947 98 HOH HOH . F 5 HOH A 148 948 166 HOH HOH . F 5 HOH A 149 949 149 HOH HOH . F 5 HOH A 150 950 29 HOH HOH . F 5 HOH A 151 951 30 HOH HOH . F 5 HOH A 152 952 153 HOH HOH . F 5 HOH A 153 953 150 HOH HOH . F 5 HOH A 154 954 186 HOH HOH . F 5 HOH A 155 955 158 HOH HOH . F 5 HOH A 156 956 64 HOH HOH . F 5 HOH A 157 957 101 HOH HOH . F 5 HOH A 158 958 126 HOH HOH . F 5 HOH A 159 959 159 HOH HOH . F 5 HOH A 160 960 182 HOH HOH . F 5 HOH A 161 961 198 HOH HOH . F 5 HOH A 162 962 178 HOH HOH . F 5 HOH A 163 963 177 HOH HOH . F 5 HOH A 164 964 137 HOH HOH . F 5 HOH A 165 965 130 HOH HOH . F 5 HOH A 166 966 69 HOH HOH . F 5 HOH A 167 967 152 HOH HOH . F 5 HOH A 168 968 103 HOH HOH . F 5 HOH A 169 969 179 HOH HOH . F 5 HOH A 170 970 196 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 A1AAG . . . E 4 -13.418 -12.706 29.948 1 46.33 ? C01 A1AAG 704 A 1 HETATM 2 C C02 A1AAG . . . E 4 -14.909 -12.971 30.137 1 60.97 ? C02 A1AAG 704 A 1 HETATM 3 C C03 A1AAG . . . E 4 -16.424 -13.426 28.187 1 53.43 ? C03 A1AAG 704 A 1 HETATM 4 C C04 A1AAG . . . E 4 -16.906 -14.366 27.084 1 51.27 ? C04 A1AAG 704 A 1 HETATM 5 C C05 A1AAG . . . E 4 -18.037 -15.262 27.569 1 49.01 ? C05 A1AAG 704 A 1 HETATM 6 C C06 A1AAG . . . E 4 -19.179 -14.385 28.056 1 42.74 ? C06 A1AAG 704 A 1 HETATM 7 C C07 A1AAG . . . E 4 -21.211 -16.657 27.757 1 46.31 ? C07 A1AAG 704 A 1 HETATM 8 C C08 A1AAG . . . E 4 -22.371 -17.368 28.444 1 42.43 ? C08 A1AAG 704 A 1 HETATM 9 C C09 A1AAG . . . E 4 -23.011 -18.305 27.431 1 44.13 ? C09 A1AAG 704 A 1 HETATM 10 C C10 A1AAG . . . E 4 -24.098 -19.117 28.122 1 37.97 ? C10 A1AAG 704 A 1 HETATM 11 C C11 A1AAG . . . E 4 -24.857 -19.886 27.052 1 41.68 ? C11 A1AAG 704 A 1 HETATM 12 C C12 A1AAG . . . E 4 -21.84 -18.214 29.595 1 41.37 ? C12 A1AAG 704 A 1 HETATM 13 C C13 A1AAG . . . E 4 -14.636 -14.602 26.062 1 56.63 ? C13 A1AAG 704 A 1 HETATM 14 C C14 A1AAG . . . E 4 -13.48 -15.489 25.609 1 56.22 ? C14 A1AAG 704 A 1 HETATM 15 N N01 A1AAG . . . E 4 -15.378 -13.86 29.092 1 53.56 ? N01 A1AAG 704 A 1 HETATM 16 N N02 A1AAG . . . E 4 -15.81 -15.206 26.653 1 50.42 ? N02 A1AAG 704 A 1 HETATM 17 O O01 A1AAG . . . E 4 -16.885 -12.341 28.292 1 50.63 ? O01 A1AAG 704 A 1 HETATM 18 O O02 A1AAG . . . E 4 -20.004 -16.014 30.127 1 44.01 ? O02 A1AAG 704 A 1 HETATM 19 O O03 A1AAG . . . E 4 -21.443 -14.512 29.496 1 44.31 ? O03 A1AAG 704 A 1 HETATM 20 O O04 A1AAG . . . E 4 -24.237 -20.381 26.08 1 45.67 ? O04 A1AAG 704 A 1 HETATM 21 O O05 A1AAG . . . E 4 -26.099 -20.017 27.139 1 37.47 ? O05 A1AAG 704 A 1 HETATM 22 O O06 A1AAG . . . E 4 -20.904 -19.021 29.389 1 48.11 ? O06 A1AAG 704 A 1 HETATM 23 O O07 A1AAG . . . E 4 -22.334 -18.107 30.744 1 39.56 ? O07 A1AAG 704 A 1 HETATM 24 O O08 A1AAG . . . E 4 -14.576 -13.427 25.933 1 59.05 ? O08 A1AAG 704 A 1 HETATM 25 P P01 A1AAG . . . E 4 -20.452 -15.422 28.916 1 50.11 ? P01 A1AAG 704 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 649 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 25 #