data_8V3O # _model_server_result.job_id yCS7CafseWYNNgB24fE7Zg _model_server_result.datetime_utc '2025-03-06 23:27:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8v3o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 8V3O # _exptl.entry_id 8V3O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 134.087 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MALATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8V3O _cell.length_a 65.429 _cell.length_b 81.372 _cell.length_c 104 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8V3O _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 361 A CYS 442 1_555 A SG CYS 436 A CYS 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 B C GLU 9 I GLU 9 1_555 B N BIX 10 I BIX 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 B C3 BIX 10 I BIX 10 1_555 B N GLY 11 I GLY 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A ND1 HIS 252 A HIS 252 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc2 A OE1 GLU 255 A GLU 255 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc3 A OE2 GLU 255 A GLU 255 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc4 A ND1 HIS 353 A HIS 434 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc5 C ZN ZN . A ZN 701 1_555 B O6 BIX 10 I BIX 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? # _chem_comp.formula 'C4 H6 O5' _chem_comp.formula_weight 134.087 _chem_comp.id MLT _chem_comp.mon_nstd_flag . _chem_comp.name D-MALATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R)-2-HYDROXYBUTANEDIOIC ACID;2-HYDROXY-SUCCINIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MLT doub 274 n n C1 O2 MLT sing 275 n n C1 C2 MLT sing 276 n n C2 O3 MLT sing 277 n n C2 C3 MLT sing 278 n n C2 H2 MLT sing 279 n n O3 HO3 MLT sing 280 n n C3 C4 MLT sing 281 n n C3 H31 MLT sing 282 n n C3 H32 MLT sing 283 n n C4 O4 MLT doub 284 n n C4 O5 MLT sing 285 n n O5 HO5 MLT sing 286 n n O2 H6 MLT sing 287 n n # _atom_sites.entry_id 8V3O _atom_sites.fract_transf_matrix[1][1] 0.015284 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012289 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009615 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 701 1 ZN ZN . D 4 MLT A 1 702 1 MLT MLT . E 4 MLT A 1 703 2 MLT MLT . F 5 K A 1 704 1 K K . G 6 HOH A 1 801 107 HOH HOH . G 6 HOH A 2 802 161 HOH HOH . G 6 HOH A 3 803 28 HOH HOH . G 6 HOH A 4 804 106 HOH HOH . G 6 HOH A 5 805 52 HOH HOH . G 6 HOH A 6 806 71 HOH HOH . G 6 HOH A 7 807 56 HOH HOH . G 6 HOH A 8 808 8 HOH HOH . G 6 HOH A 9 809 65 HOH HOH . G 6 HOH A 10 810 33 HOH HOH . G 6 HOH A 11 811 18 HOH HOH . G 6 HOH A 12 812 132 HOH HOH . G 6 HOH A 13 813 136 HOH HOH . G 6 HOH A 14 814 30 HOH HOH . G 6 HOH A 15 815 4 HOH HOH . G 6 HOH A 16 816 167 HOH HOH . G 6 HOH A 17 817 3 HOH HOH . G 6 HOH A 18 818 5 HOH HOH . G 6 HOH A 19 819 142 HOH HOH . G 6 HOH A 20 820 58 HOH HOH . G 6 HOH A 21 821 72 HOH HOH . G 6 HOH A 22 822 85 HOH HOH . G 6 HOH A 23 823 6 HOH HOH . G 6 HOH A 24 824 35 HOH HOH . G 6 HOH A 25 825 98 HOH HOH . G 6 HOH A 26 826 38 HOH HOH . G 6 HOH A 27 827 57 HOH HOH . G 6 HOH A 28 828 99 HOH HOH . G 6 HOH A 29 829 43 HOH HOH . G 6 HOH A 30 830 122 HOH HOH . G 6 HOH A 31 831 53 HOH HOH . G 6 HOH A 32 832 61 HOH HOH . G 6 HOH A 33 833 12 HOH HOH . G 6 HOH A 34 834 21 HOH HOH . G 6 HOH A 35 835 15 HOH HOH . G 6 HOH A 36 836 91 HOH HOH . G 6 HOH A 37 837 37 HOH HOH . G 6 HOH A 38 838 164 HOH HOH . G 6 HOH A 39 839 9 HOH HOH . G 6 HOH A 40 840 160 HOH HOH . G 6 HOH A 41 841 55 HOH HOH . G 6 HOH A 42 842 77 HOH HOH . G 6 HOH A 43 843 114 HOH HOH . G 6 HOH A 44 844 68 HOH HOH . G 6 HOH A 45 845 26 HOH HOH . G 6 HOH A 46 846 166 HOH HOH . G 6 HOH A 47 847 54 HOH HOH . G 6 HOH A 48 848 100 HOH HOH . G 6 HOH A 49 849 44 HOH HOH . G 6 HOH A 50 850 13 HOH HOH . G 6 HOH A 51 851 24 HOH HOH . G 6 HOH A 52 852 31 HOH HOH . G 6 HOH A 53 853 14 HOH HOH . G 6 HOH A 54 854 69 HOH HOH . G 6 HOH A 55 855 36 HOH HOH . G 6 HOH A 56 856 47 HOH HOH . G 6 HOH A 57 857 17 HOH HOH . G 6 HOH A 58 858 25 HOH HOH . G 6 HOH A 59 859 94 HOH HOH . G 6 HOH A 60 860 60 HOH HOH . G 6 HOH A 61 861 111 HOH HOH . G 6 HOH A 62 862 63 HOH HOH . G 6 HOH A 63 863 89 HOH HOH . G 6 HOH A 64 864 141 HOH HOH . G 6 HOH A 65 865 59 HOH HOH . G 6 HOH A 66 866 32 HOH HOH . G 6 HOH A 67 867 66 HOH HOH . G 6 HOH A 68 868 101 HOH HOH . G 6 HOH A 69 869 117 HOH HOH . G 6 HOH A 70 870 7 HOH HOH . G 6 HOH A 71 871 83 HOH HOH . G 6 HOH A 72 872 126 HOH HOH . G 6 HOH A 73 873 112 HOH HOH . G 6 HOH A 74 874 62 HOH HOH . G 6 HOH A 75 875 84 HOH HOH . G 6 HOH A 76 876 51 HOH HOH . G 6 HOH A 77 877 80 HOH HOH . G 6 HOH A 78 878 45 HOH HOH . G 6 HOH A 79 879 16 HOH HOH . G 6 HOH A 80 880 2 HOH HOH . G 6 HOH A 81 881 120 HOH HOH . G 6 HOH A 82 882 156 HOH HOH . G 6 HOH A 83 883 159 HOH HOH . G 6 HOH A 84 884 79 HOH HOH . G 6 HOH A 85 885 113 HOH HOH . G 6 HOH A 86 886 23 HOH HOH . G 6 HOH A 87 887 146 HOH HOH . G 6 HOH A 88 888 139 HOH HOH . G 6 HOH A 89 889 78 HOH HOH . G 6 HOH A 90 890 76 HOH HOH . G 6 HOH A 91 891 157 HOH HOH . G 6 HOH A 92 892 40 HOH HOH . G 6 HOH A 93 893 87 HOH HOH . G 6 HOH A 94 894 133 HOH HOH . G 6 HOH A 95 895 151 HOH HOH . G 6 HOH A 96 896 67 HOH HOH . G 6 HOH A 97 897 19 HOH HOH . G 6 HOH A 98 898 92 HOH HOH . G 6 HOH A 99 899 41 HOH HOH . G 6 HOH A 100 900 134 HOH HOH . G 6 HOH A 101 901 116 HOH HOH . G 6 HOH A 102 902 82 HOH HOH . G 6 HOH A 103 903 140 HOH HOH . G 6 HOH A 104 904 64 HOH HOH . G 6 HOH A 105 905 42 HOH HOH . G 6 HOH A 106 906 121 HOH HOH . G 6 HOH A 107 907 165 HOH HOH . G 6 HOH A 108 908 11 HOH HOH . G 6 HOH A 109 909 118 HOH HOH . G 6 HOH A 110 910 96 HOH HOH . G 6 HOH A 111 911 147 HOH HOH . G 6 HOH A 112 912 81 HOH HOH . G 6 HOH A 113 913 93 HOH HOH . G 6 HOH A 114 914 10 HOH HOH . G 6 HOH A 115 915 49 HOH HOH . G 6 HOH A 116 916 20 HOH HOH . G 6 HOH A 117 917 145 HOH HOH . G 6 HOH A 118 918 74 HOH HOH . G 6 HOH A 119 919 104 HOH HOH . G 6 HOH A 120 920 46 HOH HOH . G 6 HOH A 121 921 27 HOH HOH . G 6 HOH A 122 922 102 HOH HOH . G 6 HOH A 123 923 135 HOH HOH . G 6 HOH A 124 924 129 HOH HOH . G 6 HOH A 125 925 88 HOH HOH . G 6 HOH A 126 926 34 HOH HOH . G 6 HOH A 127 927 125 HOH HOH . G 6 HOH A 128 928 149 HOH HOH . G 6 HOH A 129 929 90 HOH HOH . G 6 HOH A 130 930 103 HOH HOH . G 6 HOH A 131 931 131 HOH HOH . G 6 HOH A 132 932 150 HOH HOH . G 6 HOH A 133 933 127 HOH HOH . H 6 HOH I 1 101 1 HOH HOH . H 6 HOH I 2 102 144 HOH HOH . H 6 HOH I 3 103 22 HOH HOH . H 6 HOH I 4 104 162 HOH HOH . H 6 HOH I 5 105 143 HOH HOH . H 6 HOH I 6 106 154 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLT . . . D 4 36.566 -0.96 18.361 0.81 58.77 ? C1 MLT 702 A 1 HETATM 2 O O1 MLT . . . D 4 36.172 0.124 17.879 0.81 55.85 ? O1 MLT 702 A 1 HETATM 3 O O2 MLT . . . D 4 35.751 -1.714 18.933 0.81 60.59 -1 O2 MLT 702 A 1 HETATM 4 C C2 MLT . . . D 4 38.009 -1.352 18.258 0.81 59.21 ? C2 MLT 702 A 1 HETATM 5 O O3 MLT . . . D 4 38.594 -0.755 17.122 0.81 59.23 ? O3 MLT 702 A 1 HETATM 6 C C3 MLT . . . D 4 38.162 -2.865 18.165 0.81 60.03 ? C3 MLT 702 A 1 HETATM 7 C C4 MLT . . . D 4 38.915 -3.36 19.378 0.81 59.84 ? C4 MLT 702 A 1 HETATM 8 O O4 MLT . . . D 4 40.155 -3.503 19.337 0.81 57.12 ? O4 MLT 702 A 1 HETATM 9 O O5 MLT . . . D 4 38.311 -3.635 20.437 0.81 59.41 -1 O5 MLT 702 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #