data_8V4M
#
_model_server_result.job_id            SGY2J_hLj5grxXQQL-schw 
_model_server_result.datetime_utc      '2025-03-06 22:56:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8v4m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":502}' 
#
_entry.id    8V4M 
#
_exptl.entry_id    8V4M 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8V4M 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8V4M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B CD GLU 448 B GLU 503 1_555 J N GLU . B GLU 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? 
metalc ? metalc1 A OE2 GLU 71 A GLU 71 1_555 F MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.932 ? 
metalc ? metalc2 F MG MG . A MG 501 1_555 G O3G GTP . A GTP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
metalc ? metalc3 F MG MG . A MG 501 1_555 G O2B GTP . A GTP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc4 B OE2 GLU 69 B GLU 69 1_555 H MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.818 ? 
metalc ? metalc5 B OE1 GLU 448 B GLU 503 1_555 O ZN ZN . E ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc6 H MG MG . B MG 601 1_555 I O2G G2P . B G2P 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? 
metalc ? metalc7 C OE2 GLU 71 C GLU 71 1_555 K MG MG . C MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? 
metalc ? metalc8 K MG MG . C MG 501 1_555 L O2B GTP . C GTP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc9 K MG MG . C MG 501 1_555 L O3G GTP . C GTP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.95 ? 
metalc ? metalc10 K MG MG . C MG 501 1_555 L O2G GTP . C GTP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? 
metalc ? metalc11 M MG MG . D MG 501 1_555 N O2B G2P . D G2P 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? 
metalc ? metalc12 M MG MG . D MG 501 1_555 N O2G G2P . D G2P 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? 
metalc ? metalc13 E ND1 HIS 252 E HIS 252 1_555 O ZN ZN . E ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc14 E OE1 GLU 255 E GLU 255 1_555 O ZN ZN . E ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? 
metalc ? metalc15 E OE2 GLU 255 E GLU 255 1_555 O ZN ZN . E ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? 
metalc ? metalc16 E ND1 HIS 434 E HIS 434 1_555 O ZN ZN . E ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 181 n n 
PG O2G GTP sing 182 n n 
PG O3G GTP sing 183 n n 
PG O3B GTP sing 184 n n 
O2G HOG2 GTP sing 185 n n 
O3G HOG3 GTP sing 186 n n 
O3B PB GTP sing 187 n n 
PB O1B GTP doub 188 n n 
PB O2B GTP sing 189 n n 
PB O3A GTP sing 190 n n 
O2B HOB2 GTP sing 191 n n 
O3A PA GTP sing 192 n n 
PA O1A GTP doub 193 n n 
PA O2A GTP sing 194 n n 
PA O5' GTP sing 195 n n 
O2A HOA2 GTP sing 196 n n 
O5' C5' GTP sing 197 n n 
C5' C4' GTP sing 198 n n 
C5' H5' GTP sing 199 n n 
C5' "H5''" GTP sing 200 n n 
C4' O4' GTP sing 201 n n 
C4' C3' GTP sing 202 n n 
C4' H4' GTP sing 203 n n 
O4' C1' GTP sing 204 n n 
C3' O3' GTP sing 205 n n 
C3' C2' GTP sing 206 n n 
C3' H3' GTP sing 207 n n 
O3' HO3' GTP sing 208 n n 
C2' O2' GTP sing 209 n n 
C2' C1' GTP sing 210 n n 
C2' H2' GTP sing 211 n n 
O2' HO2' GTP sing 212 n n 
C1' N9 GTP sing 213 n n 
C1' H1' GTP sing 214 n n 
N9 C8 GTP sing 215 n y 
N9 C4 GTP sing 216 n y 
C8 N7 GTP doub 217 n y 
C8 H8 GTP sing 218 n n 
N7 C5 GTP sing 219 n y 
C5 C6 GTP sing 220 n n 
C5 C4 GTP doub 221 n y 
C6 O6 GTP doub 222 n n 
C6 N1 GTP sing 223 n n 
N1 C2 GTP sing 224 n n 
N1 HN1 GTP sing 225 n n 
C2 N2 GTP sing 226 n n 
C2 N3 GTP doub 227 n n 
N2 HN21 GTP sing 228 n n 
N2 HN22 GTP sing 229 n n 
N3 C4 GTP sing 230 n n 
#
_atom_sites.entry_id                     8V4M 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 MG A 1 501 502 MG MG . 
G 5 GTP A 1 502 503 GTP GTP . 
H 4 MG B 1 601 502 MG MG . 
I 6 G2P B 1 602 503 G2P G2P . 
J 7 GLU B 1 1001 3 GLU GLX . 
K 4 MG C 1 501 502 MG MG . 
L 5 GTP C 1 502 503 GTP GTP . 
M 4 MG D 1 501 502 MG MG . 
N 6 G2P D 1 502 503 G2P G2P . 
O 8 ZN E 1 701 701 ZN ZN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . L 5 347.422 393.571 277.337 1 116.95 ? PG GTP 502 C 1 
HETATM 2 O O1G GTP . . . L 5 348.155 394.805 277.807 1 109.68 ? O1G GTP 502 C 1 
HETATM 3 O O2G GTP . . . L 5 346.053 393.419 277.965 1 109.12 ? O2G GTP 502 C 1 
HETATM 4 O O3G GTP . . . L 5 348.263 392.317 277.457 1 118.18 ? O3G GTP 502 C 1 
HETATM 5 O O3B GTP . . . L 5 347.173 393.789 275.754 1 109.56 ? O3B GTP 502 C 1 
HETATM 6 P PB GTP . . . L 5 346.153 393.099 274.732 1 105.2 ? PB GTP 502 C 1 
HETATM 7 O O1B GTP . . . L 5 346.492 393.523 273.358 1 105.38 ? O1B GTP 502 C 1 
HETATM 8 O O2B GTP . . . L 5 346.051 391.661 275.057 1 99.71 ? O2B GTP 502 C 1 
HETATM 9 O O3A GTP . . . L 5 344.796 393.83 275.162 1 109.3 ? O3A GTP 502 C 1 
HETATM 10 P PA GTP . . . L 5 343.309 393.822 274.581 1 104.71 ? PA GTP 502 C 1 
HETATM 11 O O1A GTP . . . L 5 343.397 393.961 273.106 1 104.44 ? O1A GTP 502 C 1 
HETATM 12 O O2A GTP . . . L 5 342.551 392.684 275.161 1 101.25 ? O2A GTP 502 C 1 
HETATM 13 O O5' GTP . . . L 5 342.791 395.191 275.224 1 107.53 ? O5' GTP 502 C 1 
HETATM 14 C C5' GTP . . . L 5 341.367 395.44 275.181 1 107.46 ? C5' GTP 502 C 1 
HETATM 15 C C4' GTP . . . L 5 341.009 396.176 273.913 1 107.74 ? C4' GTP 502 C 1 
HETATM 16 O O4' GTP . . . L 5 340.869 395.223 272.838 1 105.69 ? O4' GTP 502 C 1 
HETATM 17 C C3' GTP . . . L 5 339.665 396.903 273.947 1 110 ? C3' GTP 502 C 1 
HETATM 18 O O3' GTP . . . L 5 339.624 397.899 272.936 1 113.43 ? O3' GTP 502 C 1 
HETATM 19 C C2' GTP . . . L 5 338.71 395.748 273.637 1 105.76 ? C2' GTP 502 C 1 
HETATM 20 O O2' GTP . . . L 5 337.438 396.161 273.181 1 108.7 ? O2' GTP 502 C 1 
HETATM 21 C C1' GTP . . . L 5 339.49 395.032 272.536 1 103.18 ? C1' GTP 502 C 1 
HETATM 22 N N9 GTP . . . L 5 339.222 393.597 272.489 1 100.65 ? N9 GTP 502 C 1 
HETATM 23 C C8 GTP . . . L 5 339.829 392.623 273.239 1 101.31 ? C8 GTP 502 C 1 
HETATM 24 N N7 GTP . . . L 5 339.392 391.414 272.983 1 100.06 ? N7 GTP 502 C 1 
HETATM 25 C C5 GTP . . . L 5 338.438 391.606 271.991 1 97.92 ? C5 GTP 502 C 1 
HETATM 26 C C6 GTP . . . L 5 337.631 390.658 271.313 1 97.08 ? C6 GTP 502 C 1 
HETATM 27 O O6 GTP . . . L 5 337.601 389.428 271.461 1 99.16 ? O6 GTP 502 C 1 
HETATM 28 N N1 GTP . . . L 5 336.8 391.272 270.379 1 93.58 ? N1 GTP 502 C 1 
HETATM 29 C C2 GTP . . . L 5 336.747 392.621 270.129 1 96.5 ? C2 GTP 502 C 1 
HETATM 30 N N2 GTP . . . L 5 335.878 393.021 269.191 1 96.67 ? N2 GTP 502 C 1 
HETATM 31 N N3 GTP . . . L 5 337.502 393.517 270.76 1 97.96 ? N3 GTP 502 C 1 
HETATM 32 C C4 GTP . . . L 5 338.32 392.94 271.673 1 97.93 ? C4 GTP 502 C 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           32 
#