data_8V4R
#
_model_server_result.job_id            dNcUYxCOlnNsyvqGlXWPVA 
_model_server_result.datetime_utc      '2024-11-30 05:54:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8v4r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":701}' 
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_entry.id    8V4R 
#
_exptl.entry_id    8V4R 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8V4R 
_cell.length_a            139.407 
_cell.length_b            139.407 
_cell.length_c            542.252 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8V4R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 H N N 
? 2 K N N 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 20 n n 
P O2P AMP sing 21 n n 
P O3P AMP sing 22 n n 
P O5' AMP sing 23 n n 
O2P HOP2 AMP sing 24 n n 
O3P HOP3 AMP sing 25 n n 
O5' C5' AMP sing 26 n n 
C5' C4' AMP sing 27 n n 
C5' "H5'1" AMP sing 28 n n 
C5' "H5'2" AMP sing 29 n n 
C4' O4' AMP sing 30 n n 
C4' C3' AMP sing 31 n n 
C4' H4' AMP sing 32 n n 
O4' C1' AMP sing 33 n n 
C3' O3' AMP sing 34 n n 
C3' C2' AMP sing 35 n n 
C3' H3' AMP sing 36 n n 
O3' HO3' AMP sing 37 n n 
C2' O2' AMP sing 38 n n 
C2' C1' AMP sing 39 n n 
C2' H2' AMP sing 40 n n 
O2' HO2' AMP sing 41 n n 
C1' N9 AMP sing 42 n n 
C1' H1' AMP sing 43 n n 
N9 C8 AMP sing 44 n y 
N9 C4 AMP sing 45 n y 
C8 N7 AMP doub 46 n y 
C8 H8 AMP sing 47 n n 
N7 C5 AMP sing 48 n y 
C5 C6 AMP sing 49 n y 
C5 C4 AMP doub 50 n y 
C6 N6 AMP sing 51 n n 
C6 N1 AMP doub 52 n y 
N6 HN61 AMP sing 53 n n 
N6 HN62 AMP sing 54 n n 
N1 C2 AMP sing 55 n y 
C2 N3 AMP doub 56 n y 
C2 H2 AMP sing 57 n n 
N3 C4 AMP sing 58 n y 
#
_atom_sites.entry_id                     8V4R 
_atom_sites.fract_transf_matrix[1][1]    0.007173 
_atom_sites.fract_transf_matrix[1][2]    0.004141 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008283 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.001844 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 AMP A 1 701 701 AMP AMP . 
E 3 COA A 1 702 702 COA COA . 
F 4 ACY A 1 703 703 ACY ACY . 
G 5 GOL A 1 704 704 GOL GOL . 
H 2 AMP B 1 701 701 AMP AMP . 
I 3 COA B 1 702 702 COA COA . 
J 5 GOL B 1 703 704 GOL GOL . 
K 2 AMP C 1 701 701 AMP AMP . 
L 3 COA C 1 702 702 COA COA . 
M 6 HOH A 1 801 37 HOH HOH . 
M 6 HOH A 2 802 30 HOH HOH . 
M 6 HOH A 3 803 35 HOH HOH . 
M 6 HOH A 4 804 13 HOH HOH . 
M 6 HOH A 5 805 21 HOH HOH . 
M 6 HOH A 6 806 18 HOH HOH . 
M 6 HOH A 7 807 12 HOH HOH . 
M 6 HOH A 8 808 4 HOH HOH . 
M 6 HOH A 9 809 39 HOH HOH . 
M 6 HOH A 10 810 24 HOH HOH . 
M 6 HOH A 11 811 16 HOH HOH . 
M 6 HOH A 12 812 29 HOH HOH . 
M 6 HOH A 13 813 25 HOH HOH . 
M 6 HOH A 14 814 22 HOH HOH . 
M 6 HOH A 15 815 36 HOH HOH . 
M 6 HOH A 16 816 11 HOH HOH . 
M 6 HOH A 17 817 3 HOH HOH . 
M 6 HOH A 18 818 28 HOH HOH . 
M 6 HOH A 19 819 19 HOH HOH . 
M 6 HOH A 20 820 10 HOH HOH . 
M 6 HOH A 21 821 14 HOH HOH . 
M 6 HOH A 22 822 5 HOH HOH . 
M 6 HOH A 23 823 8 HOH HOH . 
M 6 HOH A 24 824 23 HOH HOH . 
M 6 HOH A 25 825 27 HOH HOH . 
M 6 HOH A 26 826 17 HOH HOH . 
M 6 HOH A 27 827 40 HOH HOH . 
M 6 HOH A 28 828 33 HOH HOH . 
N 6 HOH B 1 801 38 HOH HOH . 
N 6 HOH B 2 802 15 HOH HOH . 
N 6 HOH B 3 803 7 HOH HOH . 
N 6 HOH B 4 804 32 HOH HOH . 
N 6 HOH B 5 805 1 HOH HOH . 
N 6 HOH B 6 806 31 HOH HOH . 
N 6 HOH B 7 807 26 HOH HOH . 
N 6 HOH B 8 808 34 HOH HOH . 
N 6 HOH B 9 809 41 HOH HOH . 
N 6 HOH B 10 810 20 HOH HOH . 
N 6 HOH B 11 811 2 HOH HOH . 
N 6 HOH B 12 812 9 HOH HOH . 
O 6 HOH C 1 801 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . D 2 16.61 18.44 -18.315 1 67.02 ? P AMP 701 A 1 
HETATM 2 O O1P AMP . . . D 2 17.24 18.58 -19.679 1 74.87 ? O1P AMP 701 A 1 
HETATM 3 O O2P AMP . . . D 2 15.441 17.488 -18.274 1 66.92 ? O2P AMP 701 A 1 
HETATM 4 O O3P AMP . . . D 2 16.358 19.73 -17.574 1 56.72 ? O3P AMP 701 A 1 
HETATM 5 O O5' AMP . . . D 2 17.748 17.714 -17.47 1 53.79 ? O5' AMP 701 A 1 
HETATM 6 C C5' AMP . . . D 2 18.85 18.448 -16.958 1 57.49 ? C5' AMP 701 A 1 
HETATM 7 C C4' AMP . . . D 2 20.08 17.587 -16.84 1 58.8 ? C4' AMP 701 A 1 
HETATM 8 O O4' AMP . . . D 2 20.733 17.475 -18.128 1 65.32 ? O4' AMP 701 A 1 
HETATM 9 C C3' AMP . . . D 2 21.176 18.122 -15.933 1 62.47 ? C3' AMP 701 A 1 
HETATM 10 O O3' AMP . . . D 2 20.908 17.923 -14.555 1 61.37 ? O3' AMP 701 A 1 
HETATM 11 C C2' AMP . . . D 2 22.415 17.389 -16.441 1 61.03 ? C2' AMP 701 A 1 
HETATM 12 O O2' AMP . . . D 2 22.525 16.094 -15.867 1 63.97 ? O2' AMP 701 A 1 
HETATM 13 C C1' AMP . . . D 2 22.114 17.249 -17.94 1 56.43 ? C1' AMP 701 A 1 
HETATM 14 N N9 AMP . . . D 2 22.88 18.222 -18.741 1 52.45 ? N9 AMP 701 A 1 
HETATM 15 C C8 AMP . . . D 2 22.401 19.331 -19.338 1 57.7 ? C8 AMP 701 A 1 
HETATM 16 N N7 AMP . . . D 2 23.396 19.996 -19.986 1 57.53 ? N7 AMP 701 A 1 
HETATM 17 C C5 AMP . . . D 2 24.536 19.306 -19.803 1 57.26 ? C5 AMP 701 A 1 
HETATM 18 C C6 AMP . . . D 2 25.955 19.44 -20.207 1 53.46 ? C6 AMP 701 A 1 
HETATM 19 N N6 AMP . . . D 2 26.374 20.478 -20.956 1 53.98 ? N6 AMP 701 A 1 
HETATM 20 N N1 AMP . . . D 2 26.829 18.497 -19.801 1 59 ? N1 AMP 701 A 1 
HETATM 21 C C2 AMP . . . D 2 26.441 17.452 -19.047 1 59.81 ? C2 AMP 701 A 1 
HETATM 22 N N3 AMP . . . D 2 25.168 17.271 -18.648 1 58.98 ? N3 AMP 701 A 1 
HETATM 23 C C4 AMP . . . D 2 24.188 18.141 -18.983 1 53.87 ? C4 AMP 701 A 1 
#
_model_server_stats.io_time_ms              106 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    170 
_model_server_stats.query_time_ms           404 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           23 
#