data_8V4R # _model_server_result.job_id flfmnUn-hzv8hoa6Zd0Bvw _model_server_result.datetime_utc '2024-10-19 17:31:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8v4r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":702}' # _entry.id 8V4R # _exptl.entry_id 8V4R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8V4R _cell.length_a 139.407 _cell.length_b 139.407 _cell.length_c 542.252 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8V4R _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N ? 3 L N N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 116 n y N1A C6A COA doub 117 n y C2A N3A COA doub 118 n y C2A H2A COA sing 119 n n N3A C4A COA sing 120 n y C4A C5A COA doub 121 n y C4A N9A COA sing 122 n y C5A C6A COA sing 123 n y C5A N7A COA sing 124 n y C6A N6A COA sing 125 n n N6A H61A COA sing 126 n n N6A H62A COA sing 127 n n N7A C8A COA doub 128 n y C8A N9A COA sing 129 n y C8A H8A COA sing 130 n n N9A C1B COA sing 131 n n C1B C2B COA sing 132 n n C1B O4B COA sing 133 n n C1B H1B COA sing 134 n n C2B O2B COA sing 135 n n C2B C3B COA sing 136 n n C2B H2B COA sing 137 n n O2B HO2A COA sing 138 n n C3B O3B COA sing 139 n n C3B C4B COA sing 140 n n C3B H3B COA sing 141 n n O3B P3B COA sing 142 n n P3B O7A COA doub 143 n n P3B O8A COA sing 144 n n P3B O9A COA sing 145 n n O8A HOA8 COA sing 146 n n O9A HOA9 COA sing 147 n n C4B O4B COA sing 148 n n C4B C5B COA sing 149 n n C4B H4B COA sing 150 n n C5B O5B COA sing 151 n n C5B H51A COA sing 152 n n C5B H52A COA sing 153 n n O5B P1A COA sing 154 n n P1A O1A COA doub 155 n n P1A O2A COA sing 156 n n P1A O3A COA sing 157 n n O2A HOA2 COA sing 158 n n O3A P2A COA sing 159 n n P2A O4A COA doub 160 n n P2A O5A COA sing 161 n n P2A O6A COA sing 162 n n O5A HOA5 COA sing 163 n n O6A CCP COA sing 164 n n CBP CCP COA sing 165 n n CBP CDP COA sing 166 n n CBP CEP COA sing 167 n n CBP CAP COA sing 168 n n CCP H121 COA sing 169 n n CCP H122 COA sing 170 n n CDP H131 COA sing 171 n n CDP H132 COA sing 172 n n CDP H133 COA sing 173 n n CEP H141 COA sing 174 n n CEP H142 COA sing 175 n n CEP H143 COA sing 176 n n CAP OAP COA sing 177 n n CAP C9P COA sing 178 n n CAP H10 COA sing 179 n n OAP HO1 COA sing 180 n n C9P O9P COA doub 181 n n C9P N8P COA sing 182 n n N8P C7P COA sing 183 n n N8P HN8 COA sing 184 n n C7P C6P COA sing 185 n n C7P H71 COA sing 186 n n C7P H72 COA sing 187 n n C6P C5P COA sing 188 n n C6P H61 COA sing 189 n n C6P H62 COA sing 190 n n C5P O5P COA doub 191 n n C5P N4P COA sing 192 n n N4P C3P COA sing 193 n n N4P HN4 COA sing 194 n n C3P C2P COA sing 195 n n C3P H31 COA sing 196 n n C3P H32 COA sing 197 n n C2P S1P COA sing 198 n n C2P H21 COA sing 199 n n C2P H22 COA sing 200 n n S1P HS1 COA sing 201 n n # _atom_sites.entry_id 8V4R _atom_sites.fract_transf_matrix[1][1] 0.007173 _atom_sites.fract_transf_matrix[1][2] 0.004141 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008283 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001844 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 AMP A 1 701 701 AMP AMP . E 3 COA A 1 702 702 COA COA . F 4 ACY A 1 703 703 ACY ACY . G 5 GOL A 1 704 704 GOL GOL . H 2 AMP B 1 701 701 AMP AMP . I 3 COA B 1 702 702 COA COA . J 5 GOL B 1 703 704 GOL GOL . K 2 AMP C 1 701 701 AMP AMP . L 3 COA C 1 702 702 COA COA . M 6 HOH A 1 801 37 HOH HOH . M 6 HOH A 2 802 30 HOH HOH . M 6 HOH A 3 803 35 HOH HOH . M 6 HOH A 4 804 13 HOH HOH . M 6 HOH A 5 805 21 HOH HOH . M 6 HOH A 6 806 18 HOH HOH . M 6 HOH A 7 807 12 HOH HOH . M 6 HOH A 8 808 4 HOH HOH . M 6 HOH A 9 809 39 HOH HOH . M 6 HOH A 10 810 24 HOH HOH . M 6 HOH A 11 811 16 HOH HOH . M 6 HOH A 12 812 29 HOH HOH . M 6 HOH A 13 813 25 HOH HOH . M 6 HOH A 14 814 22 HOH HOH . M 6 HOH A 15 815 36 HOH HOH . M 6 HOH A 16 816 11 HOH HOH . M 6 HOH A 17 817 3 HOH HOH . M 6 HOH A 18 818 28 HOH HOH . M 6 HOH A 19 819 19 HOH HOH . M 6 HOH A 20 820 10 HOH HOH . M 6 HOH A 21 821 14 HOH HOH . M 6 HOH A 22 822 5 HOH HOH . M 6 HOH A 23 823 8 HOH HOH . M 6 HOH A 24 824 23 HOH HOH . M 6 HOH A 25 825 27 HOH HOH . M 6 HOH A 26 826 17 HOH HOH . M 6 HOH A 27 827 40 HOH HOH . M 6 HOH A 28 828 33 HOH HOH . N 6 HOH B 1 801 38 HOH HOH . N 6 HOH B 2 802 15 HOH HOH . N 6 HOH B 3 803 7 HOH HOH . N 6 HOH B 4 804 32 HOH HOH . N 6 HOH B 5 805 1 HOH HOH . N 6 HOH B 6 806 31 HOH HOH . N 6 HOH B 7 807 26 HOH HOH . N 6 HOH B 8 808 34 HOH HOH . N 6 HOH B 9 809 41 HOH HOH . N 6 HOH B 10 810 20 HOH HOH . N 6 HOH B 11 811 2 HOH HOH . N 6 HOH B 12 812 9 HOH HOH . O 6 HOH C 1 801 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . E 3 6.581 14.18 -32.029 1 82.67 ? N1A COA 702 A 1 HETATM 2 C C2A COA . . . E 3 6.197 12.908 -32.202 1 82.24 ? C2A COA 702 A 1 HETATM 3 N N3A COA . . . E 3 6.899 11.788 -32.046 1 84.4 ? N3A COA 702 A 1 HETATM 4 C C4A COA . . . E 3 8.156 12.066 -31.662 1 88.81 ? C4A COA 702 A 1 HETATM 5 C C5A COA . . . E 3 8.699 13.314 -31.444 1 88.77 ? C5A COA 702 A 1 HETATM 6 C C6A COA . . . E 3 7.857 14.427 -31.641 1 85.17 ? C6A COA 702 A 1 HETATM 7 N N6A COA . . . E 3 8.242 15.688 -31.468 1 75.38 ? N6A COA 702 A 1 HETATM 8 N N7A COA . . . E 3 10.029 13.196 -31.057 1 89.33 ? N7A COA 702 A 1 HETATM 9 C C8A COA . . . E 3 10.263 11.904 -31.046 1 92.43 ? C8A COA 702 A 1 HETATM 10 N N9A COA . . . E 3 9.156 11.167 -31.392 1 89.72 ? N9A COA 702 A 1 HETATM 11 C C1B COA . . . E 3 9.049 9.726 -31.52 1 94.62 ? C1B COA 702 A 1 HETATM 12 C C2B COA . . . E 3 9.549 9.204 -32.869 1 98.85 ? C2B COA 702 A 1 HETATM 13 O O2B COA . . . E 3 8.659 9.442 -33.934 1 95.64 ? O2B COA 702 A 1 HETATM 14 C C3B COA . . . E 3 9.74 7.72 -32.539 1 99.22 ? C3B COA 702 A 1 HETATM 15 O O3B COA . . . E 3 8.479 7.066 -32.704 1 95.64 ? O3B COA 702 A 1 HETATM 16 P P3B COA . . . E 3 8.693 5.532 -33.156 1 109.4 ? P3B COA 702 A 1 HETATM 17 O O7A COA . . . E 3 9.502 4.846 -32.07 1 94.03 ? O7A COA 702 A 1 HETATM 18 O O8A COA . . . E 3 9.43 5.568 -34.483 1 108.27 ? O8A COA 702 A 1 HETATM 19 O O9A COA . . . E 3 7.302 4.941 -33.292 1 104.2 ? O9A COA 702 A 1 HETATM 20 C C4B COA . . . E 3 10.173 7.741 -31.075 1 99.93 ? C4B COA 702 A 1 HETATM 21 O O4B COA . . . E 3 9.876 9.077 -30.586 1 97.47 ? O4B COA 702 A 1 HETATM 22 C C5B COA . . . E 3 11.638 7.45 -30.84 1 101.91 ? C5B COA 702 A 1 HETATM 23 O O5B COA . . . E 3 12.352 8.695 -30.62 1 99.68 ? O5B COA 702 A 1 HETATM 24 P P1A COA . . . E 3 13.842 8.876 -31.19 1 104.69 ? P1A COA 702 A 1 HETATM 25 O O1A COA . . . E 3 14.473 7.533 -31.361 1 103.96 ? O1A COA 702 A 1 HETATM 26 O O2A COA . . . E 3 14.568 9.889 -30.366 1 98.26 ? O2A COA 702 A 1 HETATM 27 O O3A COA . . . E 3 13.531 9.52 -32.626 1 105.38 ? O3A COA 702 A 1 HETATM 28 P P2A COA . . . E 3 14.382 10.273 -33.76 1 102.13 ? P2A COA 702 A 1 HETATM 29 O O4A COA . . . E 3 15.441 9.354 -34.275 1 89.48 ? O4A COA 702 A 1 HETATM 30 O O5A COA . . . E 3 13.427 10.912 -34.713 1 97.75 ? O5A COA 702 A 1 HETATM 31 O O6A COA . . . E 3 15.092 11.447 -32.926 1 110.07 ? O6A COA 702 A 1 HETATM 32 C CBP COA . . . E 3 16.246 13.582 -32.632 1 104.97 ? CBP COA 702 A 1 HETATM 33 C CCP COA . . . E 3 15.753 12.538 -33.636 1 97.18 ? CCP COA 702 A 1 HETATM 34 C CDP COA . . . E 3 17.774 13.572 -32.62 1 89.36 ? CDP COA 702 A 1 HETATM 35 C CEP COA . . . E 3 15.764 14.967 -33.074 1 95.62 ? CEP COA 702 A 1 HETATM 36 C CAP COA . . . E 3 15.694 13.288 -31.236 1 102.82 ? CAP COA 702 A 1 HETATM 37 O OAP COA . . . E 3 16.412 12.149 -30.716 1 94.56 ? OAP COA 702 A 1 HETATM 38 C C9P COA . . . E 3 15.699 14.393 -30.2 1 103.78 ? C9P COA 702 A 1 HETATM 39 O O9P COA . . . E 3 14.614 14.805 -29.794 1 102.11 ? O9P COA 702 A 1 HETATM 40 N N8P COA . . . E 3 16.875 14.831 -29.768 1 103.02 ? N8P COA 702 A 1 HETATM 41 C C7P COA . . . E 3 17.114 15.904 -28.802 1 94.34 ? C7P COA 702 A 1 HETATM 42 C C6P COA . . . E 3 15.879 16.468 -28.104 1 91.58 ? C6P COA 702 A 1 HETATM 43 C C5P COA . . . E 3 15.099 17.495 -28.903 1 97.55 ? C5P COA 702 A 1 HETATM 44 O O5P COA . . . E 3 14.466 17.146 -29.896 1 97.32 ? O5P COA 702 A 1 HETATM 45 N N4P COA . . . E 3 15.094 18.788 -28.525 1 91.45 ? N4P COA 702 A 1 HETATM 46 C C3P COA . . . E 3 15.758 19.374 -27.366 1 84.54 ? C3P COA 702 A 1 HETATM 47 C C2P COA . . . E 3 17.268 19.252 -27.397 1 83.69 ? C2P COA 702 A 1 HETATM 48 S S1P COA . . . E 3 18.027 19.504 -25.77 1 104.59 ? S1P COA 702 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 359 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #