data_8V4R
#
_model_server_result.job_id            QgtWAIwGK5DgrePpheyZNw 
_model_server_result.datetime_utc      '2024-11-30 05:57:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8v4r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":703}' 
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_entry.id    8V4R 
#
_exptl.entry_id    8V4R 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8V4R 
_cell.length_a            139.407 
_cell.length_b            139.407 
_cell.length_c            542.252 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 8V4R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 J N N 
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_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 261 n n 
C1 C2 GOL sing 262 n n 
C1 H11 GOL sing 263 n n 
C1 H12 GOL sing 264 n n 
O1 HO1 GOL sing 265 n n 
C2 O2 GOL sing 266 n n 
C2 C3 GOL sing 267 n n 
C2 H2 GOL sing 268 n n 
O2 HO2 GOL sing 269 n n 
C3 O3 GOL sing 270 n n 
C3 H31 GOL sing 271 n n 
C3 H32 GOL sing 272 n n 
O3 HO3 GOL sing 273 n n 
#
_atom_sites.entry_id                     8V4R 
_atom_sites.fract_transf_matrix[1][1]    0.007173 
_atom_sites.fract_transf_matrix[1][2]    0.004141 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008283 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.001844 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 AMP A 1 701 701 AMP AMP . 
E 3 COA A 1 702 702 COA COA . 
F 4 ACY A 1 703 703 ACY ACY . 
G 5 GOL A 1 704 704 GOL GOL . 
H 2 AMP B 1 701 701 AMP AMP . 
I 3 COA B 1 702 702 COA COA . 
J 5 GOL B 1 703 704 GOL GOL . 
K 2 AMP C 1 701 701 AMP AMP . 
L 3 COA C 1 702 702 COA COA . 
M 6 HOH A 1 801 37 HOH HOH . 
M 6 HOH A 2 802 30 HOH HOH . 
M 6 HOH A 3 803 35 HOH HOH . 
M 6 HOH A 4 804 13 HOH HOH . 
M 6 HOH A 5 805 21 HOH HOH . 
M 6 HOH A 6 806 18 HOH HOH . 
M 6 HOH A 7 807 12 HOH HOH . 
M 6 HOH A 8 808 4 HOH HOH . 
M 6 HOH A 9 809 39 HOH HOH . 
M 6 HOH A 10 810 24 HOH HOH . 
M 6 HOH A 11 811 16 HOH HOH . 
M 6 HOH A 12 812 29 HOH HOH . 
M 6 HOH A 13 813 25 HOH HOH . 
M 6 HOH A 14 814 22 HOH HOH . 
M 6 HOH A 15 815 36 HOH HOH . 
M 6 HOH A 16 816 11 HOH HOH . 
M 6 HOH A 17 817 3 HOH HOH . 
M 6 HOH A 18 818 28 HOH HOH . 
M 6 HOH A 19 819 19 HOH HOH . 
M 6 HOH A 20 820 10 HOH HOH . 
M 6 HOH A 21 821 14 HOH HOH . 
M 6 HOH A 22 822 5 HOH HOH . 
M 6 HOH A 23 823 8 HOH HOH . 
M 6 HOH A 24 824 23 HOH HOH . 
M 6 HOH A 25 825 27 HOH HOH . 
M 6 HOH A 26 826 17 HOH HOH . 
M 6 HOH A 27 827 40 HOH HOH . 
M 6 HOH A 28 828 33 HOH HOH . 
N 6 HOH B 1 801 38 HOH HOH . 
N 6 HOH B 2 802 15 HOH HOH . 
N 6 HOH B 3 803 7 HOH HOH . 
N 6 HOH B 4 804 32 HOH HOH . 
N 6 HOH B 5 805 1 HOH HOH . 
N 6 HOH B 6 806 31 HOH HOH . 
N 6 HOH B 7 807 26 HOH HOH . 
N 6 HOH B 8 808 34 HOH HOH . 
N 6 HOH B 9 809 41 HOH HOH . 
N 6 HOH B 10 810 20 HOH HOH . 
N 6 HOH B 11 811 2 HOH HOH . 
N 6 HOH B 12 812 9 HOH HOH . 
O 6 HOH C 1 801 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . J 5 10.686 52.277 6.756 1 88 ? C1 GOL 703 B 1 
HETATM 2 O O1 GOL . . . J 5 10.877 51.608 5.529 1 84.36 ? O1 GOL 703 B 1 
HETATM 3 C C2 GOL . . . J 5 9.788 53.489 6.558 1 92.13 ? C2 GOL 703 B 1 
HETATM 4 O O2 GOL . . . J 5 9.337 53.503 5.217 1 80.22 ? O2 GOL 703 B 1 
HETATM 5 C C3 GOL . . . J 5 8.628 53.472 7.55 1 73.79 ? C3 GOL 703 B 1 
HETATM 6 O O3 GOL . . . J 5 8.196 54.802 7.76 1 70.33 ? O3 GOL 703 B 1 
#
_model_server_stats.io_time_ms              34 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
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