data_8V5G # _model_server_result.job_id eWEEjqXc8EAdrRdxf14C1g _model_server_result.datetime_utc '2025-07-05 03:44:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8v5g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":701}' # _entry.id 8V5G # _exptl.entry_id 8V5G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 373.388 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-deoxy-5'-(ethylsulfamamido)adenosine" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.4 _cell.angle_gamma 90 _cell.entry_id 8V5G _cell.length_a 72.01 _cell.length_b 183.85 _cell.length_c 84.725 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8V5G _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N # _chem_comp.formula 'C12 H19 N7 O5 S' _chem_comp.formula_weight 373.388 _chem_comp.id YDO _chem_comp.mon_nstd_flag . _chem_comp.name "5'-deoxy-5'-(ethylsulfamamido)adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 YDO sing 376 n n N7 C1 YDO doub 377 n y N7 C12 YDO sing 378 n y C1 C2 YDO sing 379 n y C12 N6 YDO doub 380 n y C2 N5 YDO sing 381 n y C2 C3 YDO doub 382 n y N5 C11 YDO doub 383 n y N6 C3 YDO sing 384 n y C3 N2 YDO sing 385 n y C11 N2 YDO sing 386 n y N2 C4 YDO sing 387 n n C9 C10 YDO sing 388 n n C9 N4 YDO sing 389 n n O3 S1 YDO doub 390 n n C4 O5 YDO sing 391 n n C4 C5 YDO sing 392 n n N4 S1 YDO sing 393 n n N3 S1 YDO sing 394 n n N3 C8 YDO sing 395 n n O5 C7 YDO sing 396 n n S1 O4 YDO doub 397 n n C5 C6 YDO sing 398 n n C5 O1 YDO sing 399 n n C8 C7 YDO sing 400 n n C6 C7 YDO sing 401 n n C6 O2 YDO sing 402 n n N1 H1 YDO sing 403 n n N1 H2 YDO sing 404 n n N3 H3 YDO sing 405 n n C4 H4 YDO sing 406 n n C5 H5 YDO sing 407 n n C6 H6 YDO sing 408 n n C7 H7 YDO sing 409 n n C8 H8 YDO sing 410 n n C8 H9 YDO sing 411 n n C10 H10 YDO sing 412 n n C10 H11 YDO sing 413 n n C10 H12 YDO sing 414 n n C11 H13 YDO sing 415 n n C12 H14 YDO sing 416 n n C9 H15 YDO sing 417 n n C9 H16 YDO sing 418 n n N4 H17 YDO sing 419 n n O1 H18 YDO sing 420 n n O2 H19 YDO sing 421 n n # _atom_sites.entry_id 8V5G _atom_sites.fract_transf_matrix[1][1] 0.013887 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000826 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005439 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011824 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 YDO A 1 701 1 YDO LIG . E 3 CL B 1 701 1 CL CL . F 2 YDO B 1 702 2 YDO LIG . G 4 HOH A 1 801 60 HOH HOH . G 4 HOH A 2 802 36 HOH HOH . G 4 HOH A 3 803 14 HOH HOH . G 4 HOH A 4 804 62 HOH HOH . G 4 HOH A 5 805 39 HOH HOH . G 4 HOH A 6 806 79 HOH HOH . G 4 HOH A 7 807 86 HOH HOH . G 4 HOH A 8 808 81 HOH HOH . G 4 HOH A 9 809 22 HOH HOH . G 4 HOH A 10 810 110 HOH HOH . G 4 HOH A 11 811 99 HOH HOH . G 4 HOH A 12 812 61 HOH HOH . G 4 HOH A 13 813 21 HOH HOH . G 4 HOH A 14 814 56 HOH HOH . G 4 HOH A 15 815 24 HOH HOH . G 4 HOH A 16 816 89 HOH HOH . G 4 HOH A 17 817 71 HOH HOH . G 4 HOH A 18 818 65 HOH HOH . G 4 HOH A 19 819 80 HOH HOH . G 4 HOH A 20 820 66 HOH HOH . G 4 HOH A 21 821 95 HOH HOH . G 4 HOH A 22 822 12 HOH HOH . G 4 HOH A 23 823 111 HOH HOH . G 4 HOH A 24 824 101 HOH HOH . G 4 HOH A 25 825 47 HOH HOH . G 4 HOH A 26 826 44 HOH HOH . G 4 HOH A 27 827 27 HOH HOH . G 4 HOH A 28 828 55 HOH HOH . G 4 HOH A 29 829 30 HOH HOH . G 4 HOH A 30 830 1 HOH HOH . G 4 HOH A 31 831 108 HOH HOH . G 4 HOH A 32 832 114 HOH HOH . G 4 HOH A 33 833 91 HOH HOH . G 4 HOH A 34 834 37 HOH HOH . G 4 HOH A 35 835 94 HOH HOH . G 4 HOH A 36 836 90 HOH HOH . G 4 HOH A 37 837 8 HOH HOH . G 4 HOH A 38 838 38 HOH HOH . G 4 HOH A 39 839 98 HOH HOH . H 4 HOH B 1 801 69 HOH HOH . H 4 HOH B 2 802 76 HOH HOH . H 4 HOH B 3 803 120 HOH HOH . H 4 HOH B 4 804 112 HOH HOH . H 4 HOH B 5 805 10 HOH HOH . H 4 HOH B 6 806 31 HOH HOH . H 4 HOH B 7 807 18 HOH HOH . H 4 HOH B 8 808 49 HOH HOH . H 4 HOH B 9 809 64 HOH HOH . H 4 HOH B 10 810 119 HOH HOH . H 4 HOH B 11 811 92 HOH HOH . H 4 HOH B 12 812 28 HOH HOH . H 4 HOH B 13 813 23 HOH HOH . H 4 HOH B 14 814 75 HOH HOH . H 4 HOH B 15 815 33 HOH HOH . H 4 HOH B 16 816 74 HOH HOH . H 4 HOH B 17 817 46 HOH HOH . H 4 HOH B 18 818 19 HOH HOH . H 4 HOH B 19 819 48 HOH HOH . H 4 HOH B 20 820 68 HOH HOH . H 4 HOH B 21 821 16 HOH HOH . H 4 HOH B 22 822 100 HOH HOH . H 4 HOH B 23 823 41 HOH HOH . H 4 HOH B 24 824 107 HOH HOH . H 4 HOH B 25 825 53 HOH HOH . H 4 HOH B 26 826 29 HOH HOH . H 4 HOH B 27 827 51 HOH HOH . H 4 HOH B 28 828 109 HOH HOH . H 4 HOH B 29 829 25 HOH HOH . H 4 HOH B 30 830 7 HOH HOH . H 4 HOH B 31 831 87 HOH HOH . H 4 HOH B 32 832 57 HOH HOH . H 4 HOH B 33 833 4 HOH HOH . H 4 HOH B 34 834 17 HOH HOH . H 4 HOH B 35 835 2 HOH HOH . H 4 HOH B 36 836 77 HOH HOH . H 4 HOH B 37 837 34 HOH HOH . H 4 HOH B 38 838 83 HOH HOH . H 4 HOH B 39 839 115 HOH HOH . H 4 HOH B 40 840 13 HOH HOH . H 4 HOH B 41 841 85 HOH HOH . H 4 HOH B 42 842 26 HOH HOH . H 4 HOH B 43 843 42 HOH HOH . H 4 HOH B 44 844 70 HOH HOH . H 4 HOH B 45 845 50 HOH HOH . H 4 HOH B 46 846 72 HOH HOH . H 4 HOH B 47 847 106 HOH HOH . H 4 HOH B 48 848 58 HOH HOH . H 4 HOH B 49 849 54 HOH HOH . H 4 HOH B 50 850 43 HOH HOH . H 4 HOH B 51 851 15 HOH HOH . H 4 HOH B 52 852 3 HOH HOH . H 4 HOH B 53 853 40 HOH HOH . H 4 HOH B 54 854 6 HOH HOH . H 4 HOH B 55 855 5 HOH HOH . H 4 HOH B 56 856 96 HOH HOH . H 4 HOH B 57 857 97 HOH HOH . H 4 HOH B 58 858 118 HOH HOH . I 4 HOH C 1 701 102 HOH HOH . I 4 HOH C 2 702 52 HOH HOH . I 4 HOH C 3 703 45 HOH HOH . I 4 HOH C 4 704 63 HOH HOH . I 4 HOH C 5 705 84 HOH HOH . I 4 HOH C 6 706 59 HOH HOH . I 4 HOH C 7 707 35 HOH HOH . I 4 HOH C 8 708 105 HOH HOH . I 4 HOH C 9 709 32 HOH HOH . I 4 HOH C 10 710 11 HOH HOH . I 4 HOH C 11 711 88 HOH HOH . I 4 HOH C 12 712 73 HOH HOH . I 4 HOH C 13 713 93 HOH HOH . I 4 HOH C 14 714 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 YDO . . . D 2 22.885 -32.016 15.822 1 39.57 ? N1 YDO 701 A 1 HETATM 2 N N3 YDO . . . D 2 18.689 -30.242 21.757 1 48.47 ? N3 YDO 701 A 1 HETATM 3 C C4 YDO . . . D 2 21.592 -32.789 21.644 1 43.3 ? C4 YDO 701 A 1 HETATM 4 C C5 YDO . . . D 2 22.276 -31.857 22.642 1 42.87 ? C5 YDO 701 A 1 HETATM 5 C C6 YDO . . . D 2 21.135 -30.919 23.035 1 42.06 ? C6 YDO 701 A 1 HETATM 6 C C7 YDO . . . D 2 19.948 -31.872 23.039 1 47.14 ? C7 YDO 701 A 1 HETATM 7 C C8 YDO . . . D 2 18.608 -31.227 22.835 1 50.52 ? C8 YDO 701 A 1 HETATM 8 C C10 YDO . . . D 2 21.032 -26.677 20.756 1 37.95 ? C10 YDO 701 A 1 HETATM 9 C C1 YDO . . . D 2 22.805 -32.721 16.947 1 40.64 ? C1 YDO 701 A 1 HETATM 10 C C11 YDO . . . D 2 21.523 -31.076 19.769 1 41.78 ? C11 YDO 701 A 1 HETATM 11 C C12 YDO . . . D 2 23.177 -34.765 18.044 1 40.86 ? C12 YDO 701 A 1 HETATM 12 C C2 YDO . . . D 2 22.311 -32.194 18.151 1 40.12 ? C2 YDO 701 A 1 HETATM 13 C C3 YDO . . . D 2 22.293 -33.045 19.228 1 40.08 ? C3 YDO 701 A 1 HETATM 14 C C9 YDO . . . D 2 20.073 -27.807 20.737 1 41.43 ? C9 YDO 701 A 1 HETATM 15 N N2 YDO . . . D 2 21.781 -32.324 20.274 1 42.72 ? N2 YDO 701 A 1 HETATM 16 N N4 YDO . . . D 2 19.035 -27.655 21.75 1 45.23 ? N4 YDO 701 A 1 HETATM 17 N N5 YDO . . . D 2 21.821 -30.948 18.502 1 39.57 ? N5 YDO 701 A 1 HETATM 18 N N6 YDO . . . D 2 22.714 -34.313 19.202 1 40.06 ? N6 YDO 701 A 1 HETATM 19 N N7 YDO . . . D 2 23.231 -34.01 16.937 1 41.13 ? N7 YDO 701 A 1 HETATM 20 O O1 YDO . . . D 2 22.74 -32.594 23.747 1 43.74 ? O1 YDO 701 A 1 HETATM 21 O O2 YDO . . . D 2 21.34 -30.348 24.319 1 41.65 ? O2 YDO 701 A 1 HETATM 22 O O3 YDO . . . D 2 16.973 -28.726 20.919 1 49.7 ? O3 YDO 701 A 1 HETATM 23 O O4 YDO . . . D 2 17.535 -28.755 23.315 1 54.23 ? O4 YDO 701 A 1 HETATM 24 O O5 YDO . . . D 2 20.204 -32.784 21.953 1 45.45 ? O5 YDO 701 A 1 HETATM 25 S S1 YDO . . . D 2 17.943 -28.83 21.954 1 50.82 ? S1 YDO 701 A 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #