data_8V5U
#
_model_server_result.job_id            VIEXyOP5N3u2JivbtVzhSg 
_model_server_result.datetime_utc      '2025-02-25 01:32:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8v5u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    8V5U 
#
_exptl.entry_id    8V5U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              266.334 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "(1P)-3',5-di(prop-2-en-1-yl)[1,1'-biphenyl]-2,4'-diol" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.52 
_cell.angle_gamma         90 
_cell.entry_id            8V5U 
_cell.length_a            34.452 
_cell.length_b            52.901 
_cell.length_c            68.753 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8V5U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C LYS 3 B LYS 3 1_555 B N ALY 4 B ALY 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? 
covale ? covale2 B C ALY 4 B ALY 4 1_555 B N MCM 5 B MCM 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? 
metalc ? metalc1 A SG CYS 139 A CYS 256 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc2 A SG CYS 142 A CYS 259 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc3 A SG CYS 163 A CYS 280 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc4 A SG CYS 166 A CYS 283 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
#
_chem_comp.formula           'C18 H18 O2' 
_chem_comp.formula_weight    266.334 
_chem_comp.id                Y4T 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "(1P)-3',5-di(prop-2-en-1-yl)[1,1'-biphenyl]-2,4'-diol" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Honokiol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C16 C15 Y4T doub 427 n n 
C15 C14 Y4T sing 428 n n 
C14 C13 Y4T sing 429 n n 
C3 C4 Y4T sing 430 n n 
C3 C2 Y4T sing 431 n n 
C13 C17 Y4T doub 432 n y 
C13 C12 Y4T sing 433 n y 
C17 C9 Y4T sing 434 n y 
C1 C2 Y4T doub 435 n n 
C4 C18 Y4T doub 436 n y 
C4 C5 Y4T sing 437 n y 
C18 C8 Y4T sing 438 n y 
O2 C12 Y4T sing 439 n n 
C12 C11 Y4T doub 440 n y 
C5 C6 Y4T doub 441 n y 
C9 C8 Y4T sing 442 n n 
C9 C10 Y4T doub 443 n y 
C8 C7 Y4T doub 444 n y 
C6 C7 Y4T sing 445 n y 
C7 O1 Y4T sing 446 n n 
C11 C10 Y4T sing 447 n y 
C1 H1 Y4T sing 448 n n 
C1 H2 Y4T sing 449 n n 
O1 H3 Y4T sing 450 n n 
C2 H4 Y4T sing 451 n n 
C3 H5 Y4T sing 452 n n 
C3 H6 Y4T sing 453 n n 
C5 H7 Y4T sing 454 n n 
C6 H8 Y4T sing 455 n n 
C10 H9 Y4T sing 456 n n 
C11 H10 Y4T sing 457 n n 
C14 H11 Y4T sing 458 n n 
C14 H12 Y4T sing 459 n n 
C15 H13 Y4T sing 460 n n 
C16 H14 Y4T sing 461 n n 
C16 H15 Y4T sing 462 n n 
C17 H16 Y4T sing 463 n n 
C18 H17 Y4T sing 464 n n 
O2 H18 Y4T sing 465 n n 
#
_atom_sites.entry_id                     8V5U 
_atom_sites.fract_transf_matrix[1][1]    0.029026 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001277 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018903 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014559 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN A 1 401 5 ZN ZN . 
D 4 Y4T A 1 402 1 Y4T HON . 
E 5 HOH A 1 501 22 HOH HOH . 
E 5 HOH A 2 502 64 HOH HOH . 
E 5 HOH A 3 503 44 HOH HOH . 
E 5 HOH A 4 504 57 HOH HOH . 
E 5 HOH A 5 505 46 HOH HOH . 
E 5 HOH A 6 506 4 HOH HOH . 
E 5 HOH A 7 507 66 HOH HOH . 
E 5 HOH A 8 508 71 HOH HOH . 
E 5 HOH A 9 509 34 HOH HOH . 
E 5 HOH A 10 510 12 HOH HOH . 
E 5 HOH A 11 511 92 HOH HOH . 
E 5 HOH A 12 512 24 HOH HOH . 
E 5 HOH A 13 513 23 HOH HOH . 
E 5 HOH A 14 514 52 HOH HOH . 
E 5 HOH A 15 515 36 HOH HOH . 
E 5 HOH A 16 516 54 HOH HOH . 
E 5 HOH A 17 517 53 HOH HOH . 
E 5 HOH A 18 518 29 HOH HOH . 
E 5 HOH A 19 519 55 HOH HOH . 
E 5 HOH A 20 520 3 HOH HOH . 
E 5 HOH A 21 521 15 HOH HOH . 
E 5 HOH A 22 522 26 HOH HOH . 
E 5 HOH A 23 523 6 HOH HOH . 
E 5 HOH A 24 524 43 HOH HOH . 
E 5 HOH A 25 525 45 HOH HOH . 
E 5 HOH A 26 526 79 HOH HOH . 
E 5 HOH A 27 527 49 HOH HOH . 
E 5 HOH A 28 528 33 HOH HOH . 
E 5 HOH A 29 529 50 HOH HOH . 
E 5 HOH A 30 530 63 HOH HOH . 
E 5 HOH A 31 531 1 HOH HOH . 
E 5 HOH A 32 532 7 HOH HOH . 
E 5 HOH A 33 533 73 HOH HOH . 
E 5 HOH A 34 534 8 HOH HOH . 
E 5 HOH A 35 535 19 HOH HOH . 
E 5 HOH A 36 536 51 HOH HOH . 
E 5 HOH A 37 537 78 HOH HOH . 
E 5 HOH A 38 538 18 HOH HOH . 
E 5 HOH A 39 539 27 HOH HOH . 
E 5 HOH A 40 540 16 HOH HOH . 
E 5 HOH A 41 541 9 HOH HOH . 
E 5 HOH A 42 542 56 HOH HOH . 
E 5 HOH A 43 543 14 HOH HOH . 
E 5 HOH A 44 544 69 HOH HOH . 
E 5 HOH A 45 545 13 HOH HOH . 
E 5 HOH A 46 546 84 HOH HOH . 
E 5 HOH A 47 547 21 HOH HOH . 
E 5 HOH A 48 548 35 HOH HOH . 
E 5 HOH A 49 549 11 HOH HOH . 
E 5 HOH A 50 550 17 HOH HOH . 
E 5 HOH A 51 551 77 HOH HOH . 
E 5 HOH A 52 552 76 HOH HOH . 
E 5 HOH A 53 553 94 HOH HOH . 
E 5 HOH A 54 554 90 HOH HOH . 
E 5 HOH A 55 555 32 HOH HOH . 
E 5 HOH A 56 556 2 HOH HOH . 
E 5 HOH A 57 557 59 HOH HOH . 
E 5 HOH A 58 558 31 HOH HOH . 
E 5 HOH A 59 559 39 HOH HOH . 
E 5 HOH A 60 560 87 HOH HOH . 
E 5 HOH A 61 561 81 HOH HOH . 
E 5 HOH A 62 562 5 HOH HOH . 
E 5 HOH A 63 563 62 HOH HOH . 
E 5 HOH A 64 564 82 HOH HOH . 
E 5 HOH A 65 565 40 HOH HOH . 
E 5 HOH A 66 566 74 HOH HOH . 
E 5 HOH A 67 567 25 HOH HOH . 
E 5 HOH A 68 568 86 HOH HOH . 
E 5 HOH A 69 569 10 HOH HOH . 
E 5 HOH A 70 570 75 HOH HOH . 
E 5 HOH A 71 571 58 HOH HOH . 
E 5 HOH A 72 572 89 HOH HOH . 
E 5 HOH A 73 573 65 HOH HOH . 
E 5 HOH A 74 574 47 HOH HOH . 
E 5 HOH A 75 575 41 HOH HOH . 
E 5 HOH A 76 576 37 HOH HOH . 
E 5 HOH A 77 577 20 HOH HOH . 
E 5 HOH A 78 578 28 HOH HOH . 
E 5 HOH A 79 579 70 HOH HOH . 
E 5 HOH A 80 580 67 HOH HOH . 
E 5 HOH A 81 581 60 HOH HOH . 
E 5 HOH A 82 582 68 HOH HOH . 
E 5 HOH A 83 583 61 HOH HOH . 
E 5 HOH A 84 584 30 HOH HOH . 
E 5 HOH A 85 585 83 HOH HOH . 
E 5 HOH A 86 586 99 HOH HOH . 
E 5 HOH A 87 587 38 HOH HOH . 
E 5 HOH A 88 588 96 HOH HOH . 
E 5 HOH A 89 589 42 HOH HOH . 
E 5 HOH A 90 590 95 HOH HOH . 
E 5 HOH A 91 591 97 HOH HOH . 
E 5 HOH A 92 592 91 HOH HOH . 
E 5 HOH A 93 593 93 HOH HOH . 
E 5 HOH A 94 594 48 HOH HOH . 
E 5 HOH A 95 595 88 HOH HOH . 
E 5 HOH A 96 596 72 HOH HOH . 
E 5 HOH A 97 597 85 HOH HOH . 
E 5 HOH A 98 598 98 HOH HOH . 
E 5 HOH A 99 599 80 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 Y4T . . . D 4 10.228 11.724 -3.578 1 43.3 ? C1 Y4T 402 A 1 
HETATM 2 O O1 Y4T . . . D 4 3.185 8.474 -3.525 1 39.09 ? O1 Y4T 402 A 1 
HETATM 3 C C2 Y4T . . . D 4 8.916 11.696 -3.558 1 45.9 ? C2 Y4T 402 A 1 
HETATM 4 C C7 Y4T . . . D 4 4.383 9.11 -3.784 1 42.57 ? C7 Y4T 402 A 1 
HETATM 5 C C8 Y4T . . . D 4 4.357 10.404 -4.323 1 43.55 ? C8 Y4T 402 A 1 
HETATM 6 C C3 Y4T . . . D 4 8.051 11.206 -4.679 1 42.33 ? C3 Y4T 402 A 1 
HETATM 7 C C4 Y4T . . . D 4 6.81 10.45 -4.327 1 42.66 ? C4 Y4T 402 A 1 
HETATM 8 C C5 Y4T . . . D 4 6.8 9.132 -3.819 1 42.3 ? C5 Y4T 402 A 1 
HETATM 9 C C6 Y4T . . . D 4 5.604 8.474 -3.547 1 39.8 ? C6 Y4T 402 A 1 
HETATM 10 C C9 Y4T . . . D 4 3.084 11.135 -4.541 1 48.4 ? C9 Y4T 402 A 1 
HETATM 11 C C10 Y4T . . . D 4 2.062 10.637 -5.349 1 46.53 ? C10 Y4T 402 A 1 
HETATM 12 C C11 Y4T . . . D 4 0.872 11.336 -5.502 1 46.76 ? C11 Y4T 402 A 1 
HETATM 13 C C12 Y4T . . . D 4 0.666 12.534 -4.812 1 45.36 ? C12 Y4T 402 A 1 
HETATM 14 C C13 Y4T . . . D 4 1.684 13.047 -3.991 1 50.69 ? C13 Y4T 402 A 1 
HETATM 15 C C14 Y4T . . . D 4 1.573 14.344 -3.219 1 54.42 ? C14 Y4T 402 A 1 
HETATM 16 C C15 Y4T . . . D 4 2.451 15.442 -3.682 1 53.82 ? C15 Y4T 402 A 1 
HETATM 17 C C16 Y4T . . . D 4 3.656 15.627 -3.206 1 51.84 ? C16 Y4T 402 A 1 
HETATM 18 C C17 Y4T . . . D 4 2.857 12.327 -3.85 1 47.69 ? C17 Y4T 402 A 1 
HETATM 19 C C18 Y4T . . . D 4 5.573 11.045 -4.566 1 43.3 ? C18 Y4T 402 A 1 
HETATM 20 O O2 Y4T . . . D 4 -0.524 13.204 -4.957 1 48 ? O2 Y4T 402 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           20 
#