data_8V6L # _model_server_result.job_id v98mtIlwxqRwU0rVODo-zw _model_server_result.datetime_utc '2024-11-16 18:00:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8v6l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":904}' # _entry.id 8V6L # _exptl.entry_id 8V6L _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 286.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Tetrahydrocannabivarin _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8V6L _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8V6L _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 R N N ? 3 Y N N ? 3 EA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 612 A CYS 612 1_555 A SG CYS 619 A CYS 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 721 A CYS 721 1_555 A SG CYS 731 A CYS 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 612 B CYS 612 1_555 B SG CYS 619 B CYS 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 B SG CYS 721 B CYS 721 1_555 B SG CYS 731 B CYS 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 C SG CYS 612 C CYS 612 1_555 C SG CYS 619 C CYS 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 C SG CYS 721 C CYS 721 1_555 C SG CYS 731 C CYS 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 D SG CYS 612 D CYS 612 1_555 D SG CYS 619 D CYS 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 D SG CYS 721 D CYS 721 1_555 D SG CYS 731 D CYS 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C19 H26 O2' _chem_comp.formula_weight 286.409 _chem_comp.id I8E _chem_comp.mon_nstd_flag . _chem_comp.name Tetrahydrocannabivarin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (6aR,10aR)-6,6,9-trimethyl-3-propyl-6a,7,8,10a-tetrahydro-6H-dibenzo[b,d]pyran-1-ol;THCV;THV;O-4394;GWP42004 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 I8E sing 150 n n C2 C3 I8E sing 151 n n C3 C4 I8E sing 152 n n C4 C5 I8E doub 153 n y C4 C17 I8E sing 154 n y C5 C6 I8E sing 155 n y O21 C6 I8E sing 156 n n C17 C16 I8E doub 157 n y C6 C7 I8E doub 158 n y C16 C7 I8E sing 159 n y C16 O15 I8E sing 160 n n C7 C8 I8E sing 161 n n C18 C14 I8E sing 162 n n O15 C14 I8E sing 163 n n C8 C9 I8E sing 164 n n C8 C13 I8E sing 165 n n C14 C13 I8E sing 166 n n C14 C19 I8E sing 167 n n C9 C10 I8E doub 168 n n C13 C12 I8E sing 169 n n C10 C20 I8E sing 170 n n C10 C11 I8E sing 171 n n C12 C11 I8E sing 172 n n C1 H1A I8E sing 173 n n C1 H1C I8E sing 174 n n C1 H1B I8E sing 175 n n C11 H11B I8E sing 176 n n C11 H11A I8E sing 177 n n C12 H12A I8E sing 178 n n C12 H12B I8E sing 179 n n C13 H13 I8E sing 180 n n C17 H17 I8E sing 181 n n C18 H18C I8E sing 182 n n C18 H18B I8E sing 183 n n C18 H18A I8E sing 184 n n C19 H19A I8E sing 185 n n C19 H19C I8E sing 186 n n C19 H19B I8E sing 187 n n C2 H2B I8E sing 188 n n C2 H2A I8E sing 189 n n C20 H20C I8E sing 190 n n C20 H20B I8E sing 191 n n C20 H20A I8E sing 192 n n C3 H3B I8E sing 193 n n C3 H3A I8E sing 194 n n C5 H5 I8E sing 195 n n C8 H8 I8E sing 196 n n C9 H9 I8E sing 197 n n O21 H21 I8E sing 198 n n # _atom_sites.entry_id 8V6L _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 POV A 1 901 802 POV POV . F 2 POV A 1 902 805 POV POV . G 2 POV A 1 903 807 POV POV . H 3 I8E A 1 904 901 I8E I8E . I 2 POV A 1 905 804 POV POV . J 2 POV A 1 906 803 POV POV . K 4 NA A 1 907 2 NA NA . L 4 NA A 1 908 3 NA NA . M 2 POV B 1 901 803 POV POV . N 2 POV B 1 902 802 POV POV . O 2 POV B 1 903 803 POV POV . P 2 POV B 1 904 805 POV POV . Q 2 POV B 1 905 807 POV POV . R 3 I8E B 1 906 901 I8E I8E . S 2 POV B 1 907 804 POV POV . T 4 NA B 1 908 1 NA NA . U 2 POV C 1 901 802 POV POV . V 2 POV C 1 902 803 POV POV . W 2 POV C 1 903 805 POV POV . X 2 POV C 1 904 807 POV POV . Y 3 I8E C 1 905 901 I8E I8E . Z 2 POV C 1 906 804 POV POV . AA 2 POV D 1 901 804 POV POV . BA 2 POV D 1 902 802 POV POV . CA 2 POV D 1 903 805 POV POV . DA 2 POV D 1 904 807 POV POV . EA 3 I8E D 1 905 901 I8E I8E . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I8E . . . H 3 113.199 85.67 83.557 1 42.72 ? C1 I8E 904 A 1 HETATM 2 C C10 I8E . . . H 3 109.862 82.702 76.688 1 42.72 ? C10 I8E 904 A 1 HETATM 3 C C11 I8E . . . H 3 108.385 82.723 76.427 1 42.72 ? C11 I8E 904 A 1 HETATM 4 C C12 I8E . . . H 3 107.52 82.891 77.677 1 42.72 ? C12 I8E 904 A 1 HETATM 5 C C13 I8E . . . H 3 108.333 83.372 78.883 1 42.72 ? C13 I8E 904 A 1 HETATM 6 C C14 I8E . . . H 3 107.529 83.635 80.158 1 42.72 ? C14 I8E 904 A 1 HETATM 7 C C16 I8E . . . H 3 109.649 83.584 81.359 1 42.72 ? C16 I8E 904 A 1 HETATM 8 C C17 I8E . . . H 3 110.261 83.873 82.565 1 42.72 ? C17 I8E 904 A 1 HETATM 9 C C18 I8E . . . H 3 106.966 82.368 80.776 1 42.72 ? C18 I8E 904 A 1 HETATM 10 C C19 I8E . . . H 3 106.428 84.661 79.957 1 42.72 ? C19 I8E 904 A 1 HETATM 11 C C2 I8E . . . H 3 112.288 84.989 84.549 1 42.72 ? C2 I8E 904 A 1 HETATM 12 C C20 I8E . . . H 3 110.747 82.959 75.501 1 42.72 ? C20 I8E 904 A 1 HETATM 13 C C3 I8E . . . H 3 112.101 83.517 84.249 1 42.72 ? C3 I8E 904 A 1 HETATM 14 C C4 I8E . . . H 3 111.448 83.242 82.916 1 42.72 ? C4 I8E 904 A 1 HETATM 15 C C5 I8E . . . H 3 112.007 82.33 82.033 1 42.72 ? C5 I8E 904 A 1 HETATM 16 C C6 I8E . . . H 3 111.391 82.043 80.828 1 42.72 ? C6 I8E 904 A 1 HETATM 17 C C7 I8E . . . H 3 110.196 82.669 80.452 1 42.72 ? C7 I8E 904 A 1 HETATM 18 C C8 I8E . . . H 3 109.493 82.389 79.135 1 42.72 ? C8 I8E 904 A 1 HETATM 19 C C9 I8E . . . H 3 110.347 82.468 77.899 1 42.72 ? C9 I8E 904 A 1 HETATM 20 O O15 I8E . . . H 3 108.451 84.219 81.135 1 42.72 ? O15 I8E 904 A 1 HETATM 21 O O21 I8E . . . H 3 111.956 81.095 80.037 1 42.72 ? O21 I8E 904 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #