data_8V6M # _model_server_result.job_id ffcKkxEOwRUzZoN122K1kA _model_server_result.datetime_utc '2024-11-16 19:57:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8v6m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":903}' # _entry.id 8V6M # _exptl.entry_id 8V6M _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 286.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Tetrahydrocannabivarin _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8V6M _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8V6M _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 N N N ? 3 R N N ? 3 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 612 A CYS 612 1_555 A SG CYS 619 A CYS 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 721 A CYS 721 1_555 A SG CYS 731 A CYS 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 612 B CYS 612 1_555 B SG CYS 619 B CYS 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 721 B CYS 721 1_555 B SG CYS 731 B CYS 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 C SG CYS 612 C CYS 612 1_555 C SG CYS 619 C CYS 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 C SG CYS 721 C CYS 721 1_555 C SG CYS 731 C CYS 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 D SG CYS 612 D CYS 612 1_555 D SG CYS 619 D CYS 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 D SG CYS 721 D CYS 721 1_555 D SG CYS 731 D CYS 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A O GLY 638 A GLY 638 1_555 I NA NA . A NA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc2 I NA NA . A NA 905 1_555 B O GLY 638 B GLY 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc3 I NA NA . A NA 905 1_555 C O GLY 638 C GLY 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc4 I NA NA . A NA 905 1_555 D O GLY 638 D GLY 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? # _chem_comp.formula 'C19 H26 O2' _chem_comp.formula_weight 286.409 _chem_comp.id I8E _chem_comp.mon_nstd_flag . _chem_comp.name Tetrahydrocannabivarin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (6aR,10aR)-6,6,9-trimethyl-3-propyl-6a,7,8,10a-tetrahydro-6H-dibenzo[b,d]pyran-1-ol;THCV;THV;O-4394;GWP42004 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 I8E sing 150 n n C2 C3 I8E sing 151 n n C3 C4 I8E sing 152 n n C4 C5 I8E doub 153 n y C4 C17 I8E sing 154 n y C5 C6 I8E sing 155 n y O21 C6 I8E sing 156 n n C17 C16 I8E doub 157 n y C6 C7 I8E doub 158 n y C16 C7 I8E sing 159 n y C16 O15 I8E sing 160 n n C7 C8 I8E sing 161 n n C18 C14 I8E sing 162 n n O15 C14 I8E sing 163 n n C8 C9 I8E sing 164 n n C8 C13 I8E sing 165 n n C14 C13 I8E sing 166 n n C14 C19 I8E sing 167 n n C9 C10 I8E doub 168 n n C13 C12 I8E sing 169 n n C10 C20 I8E sing 170 n n C10 C11 I8E sing 171 n n C12 C11 I8E sing 172 n n C1 H1A I8E sing 173 n n C1 H1C I8E sing 174 n n C1 H1B I8E sing 175 n n C11 H11B I8E sing 176 n n C11 H11A I8E sing 177 n n C12 H12A I8E sing 178 n n C12 H12B I8E sing 179 n n C13 H13 I8E sing 180 n n C17 H17 I8E sing 181 n n C18 H18C I8E sing 182 n n C18 H18B I8E sing 183 n n C18 H18A I8E sing 184 n n C19 H19A I8E sing 185 n n C19 H19C I8E sing 186 n n C19 H19B I8E sing 187 n n C2 H2B I8E sing 188 n n C2 H2A I8E sing 189 n n C20 H20C I8E sing 190 n n C20 H20B I8E sing 191 n n C20 H20A I8E sing 192 n n C3 H3B I8E sing 193 n n C3 H3A I8E sing 194 n n C5 H5 I8E sing 195 n n C8 H8 I8E sing 196 n n C9 H9 I8E sing 197 n n O21 H21 I8E sing 198 n n # _atom_sites.entry_id 8V6M _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 POV A 1 901 803 POV POV . F 2 POV A 1 902 805 POV POV . G 3 I8E A 1 903 901 I8E THC . H 2 POV A 1 904 807 POV POV . I 4 NA A 1 905 1 NA NA . J 4 NA A 1 906 2 NA NA . K 4 NA A 1 907 3 NA NA . L 2 POV B 1 901 803 POV POV . M 2 POV B 1 902 805 POV POV . N 3 I8E B 1 903 901 I8E THC . O 2 POV B 1 904 807 POV POV . P 2 POV C 1 901 803 POV POV . Q 2 POV C 1 902 805 POV POV . R 3 I8E C 1 903 901 I8E THC . S 2 POV C 1 904 807 POV POV . T 2 POV D 1 901 807 POV POV . U 2 POV D 1 902 803 POV POV . V 2 POV D 1 903 805 POV POV . W 3 I8E D 1 904 901 I8E THC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I8E . . . G 3 111.822 85.67 82.708 1 53.08 ? C1 I8E 903 A 1 HETATM 2 C C10 I8E . . . G 3 108.676 82.446 76.349 1 53.08 ? C10 I8E 903 A 1 HETATM 3 C C11 I8E . . . G 3 107.202 82.479 76.072 1 53.08 ? C11 I8E 903 A 1 HETATM 4 C C12 I8E . . . G 3 106.312 82.618 77.308 1 53.08 ? C12 I8E 903 A 1 HETATM 5 C C13 I8E . . . G 3 107.085 83.103 78.541 1 53.08 ? C13 I8E 903 A 1 HETATM 6 C C14 I8E . . . G 3 106.253 83.326 79.806 1 53.08 ? C14 I8E 903 A 1 HETATM 7 C C16 I8E . . . G 3 108.389 83.37 81.004 1 53.08 ? C16 I8E 903 A 1 HETATM 8 C C17 I8E . . . G 3 109.022 83.741 82.177 1 53.08 ? C17 I8E 903 A 1 HETATM 9 C C18 I8E . . . G 3 105.672 82.044 80.379 1 53.08 ? C18 I8E 903 A 1 HETATM 10 C C19 I8E . . . G 3 105.154 84.356 79.609 1 53.08 ? C19 I8E 903 A 1 HETATM 11 C C2 I8E . . . G 3 111.202 85.049 83.945 1 53.08 ? C2 I8E 903 A 1 HETATM 12 C C20 I8E . . . G 3 109.576 82.584 75.155 1 53.08 ? C20 I8E 903 A 1 HETATM 13 C C3 I8E . . . G 3 110.937 83.564 83.803 1 53.08 ? C3 I8E 903 A 1 HETATM 14 C C4 I8E . . . G 3 110.235 83.164 82.529 1 53.08 ? C4 I8E 903 A 1 HETATM 15 C C5 I8E . . . G 3 110.801 82.223 81.682 1 53.08 ? C5 I8E 903 A 1 HETATM 16 C C6 I8E . . . G 3 110.166 81.853 80.51 1 53.08 ? C6 I8E 903 A 1 HETATM 17 C C7 I8E . . . G 3 108.948 82.431 80.127 1 53.08 ? C7 I8E 903 A 1 HETATM 18 C C8 I8E . . . G 3 108.272 82.153 78.795 1 53.08 ? C8 I8E 903 A 1 HETATM 19 C C9 I8E . . . G 3 109.146 82.308 77.581 1 53.08 ? C9 I8E 903 A 1 HETATM 20 O O15 I8E . . . G 3 107.142 83.918 80.814 1 53.08 ? O15 I8E 903 A 1 HETATM 21 O O21 I8E . . . G 3 110.75 80.846 79.806 1 53.08 ? O21 I8E 903 A 1 HETATM 22 H H1A I8E . . . G 3 112.153 86.564 82.927 1 53.08 ? H1A I8E 903 A 1 HETATM 23 H H1C I8E . . . G 3 111.17 85.768 81.983 1 53.08 ? H1C I8E 903 A 1 HETATM 24 H H1B I8E . . . G 3 112.57 85.135 82.373 1 53.08 ? H1B I8E 903 A 1 HETATM 25 H H11B I8E . . . G 3 106.969 81.644 75.618 1 53.08 ? H11B I8E 903 A 1 HETATM 26 H H11A I8E . . . G 3 106.996 83.207 75.453 1 53.08 ? H11A I8E 903 A 1 HETATM 27 H H12A I8E . . . G 3 105.582 83.227 77.076 1 53.08 ? H12A I8E 903 A 1 HETATM 28 H H12B I8E . . . G 3 105.901 81.75 77.493 1 53.08 ? H12B I8E 903 A 1 HETATM 29 H H13 I8E . . . G 3 107.452 83.986 78.33 1 53.08 ? H13 I8E 903 A 1 HETATM 30 H H17 I8E . . . G 3 108.604 84.415 82.751 1 53.08 ? H17 I8E 903 A 1 HETATM 31 H H18C I8E . . . G 3 106.312 81.518 80.9 1 53.08 ? H18C I8E 903 A 1 HETATM 32 H H18B I8E . . . G 3 105.3 81.465 79.684 1 53.08 ? H18B I8E 903 A 1 HETATM 33 H H18A I8E . . . G 3 104.948 82.261 80.998 1 53.08 ? H18A I8E 903 A 1 HETATM 34 H H19A I8E . . . G 3 104.684 84.563 80.443 1 53.08 ? H19A I8E 903 A 1 HETATM 35 H H19C I8E . . . G 3 104.488 84.039 78.967 1 53.08 ? H19C I8E 903 A 1 HETATM 36 H H19B I8E . . . G 3 105.517 85.186 79.239 1 53.08 ? H19B I8E 903 A 1 HETATM 37 H H2B I8E . . . G 3 110.371 85.516 84.164 1 53.08 ? H2B I8E 903 A 1 HETATM 38 H H2A I8E . . . G 3 111.81 85.196 84.697 1 53.08 ? H2A I8E 903 A 1 HETATM 39 H H20C I8E . . . G 3 109.887 81.704 74.861 1 53.08 ? H20C I8E 903 A 1 HETATM 40 H H20B I8E . . . G 3 110.356 83.129 75.38 1 53.08 ? H20B I8E 903 A 1 HETATM 41 H H20A I8E . . . G 3 109.118 83.003 74.399 1 53.08 ? H20A I8E 903 A 1 HETATM 42 H H3B I8E . . . G 3 110.404 83.257 84.564 1 53.08 ? H3B I8E 903 A 1 HETATM 43 H H3A I8E . . . G 3 111.783 83.076 83.861 1 53.08 ? H3A I8E 903 A 1 HETATM 44 H H5 I8E . . . G 3 111.659 81.821 81.925 1 53.08 ? H5 I8E 903 A 1 HETATM 45 H H8 I8E . . . G 3 107.967 81.223 78.82 1 53.08 ? H8 I8E 903 A 1 HETATM 46 H H9 I8E . . . G 3 110.115 82.311 77.714 1 53.08 ? H9 I8E 903 A 1 HETATM 47 H H21 I8E . . . G 3 110.324 80.64 79.11 1 53.08 ? H21 I8E 903 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 47 #